Unexpected structural diversity in DNA recombination: The restriction endonuclease connection

Molecular Cell

Volumn 5, Issue 6, 2000, Pages 1025-1034

  Hickman, Alison Burgess ^a   Li, Ying ^b   Mathew, Shiny Varghese ^a   May, Earl W ^b   Craig, Nancy L ^b   Dyda, Fred ^a  

^a NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES   (United States)

^b JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSPOSASE; TYPE II SITE SPECIFIC DEOXYRIBONUCLEASE;

ARTICLE; CATALYSIS; DNA BINDING; DNA RECOMBINATION; DNA TRANSPOSITION; ENZYME ACTIVE SITE; ESCHERICHIA COLI; HYDROLYSIS; NONHUMAN; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN STRUCTURE; STRUCTURE ANALYSIS; TRANSPOSON;

ESCHERICHIA COLI;

EID: 0033634859     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1097-2765(00)80267-1     Document Type: Article

References (53)

1. Structure and function of restriction endonucleases
2. Crystal structure of Pvull endonuclease reveals extensive structural homologies to EcoRV
3. A gene regulating the heat-shock response in Escherichia coli also affects proteolysis
4. Structural basis for MutH activation in E. coli mismatch repair and relationship of MutH to restriction endonucleases
5. Structural basis for the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I: A two metal ion mechanism
6. Crystal structure of Citrobacter freundii restriction endonuclease Cfr10I at 2.15 Å resolution
7. Binding of different divalent cations to the active site of avian sarcoma virus integrase and their effects on enzymatic activity
8. RIBBONS 2.0
9. Structure of PvuII endonuclease with cognate DNA
10. Transposon Tn7
11. The three-dimensional structure of a Tn5 transposase-related protein determined to 2.9-A resolution
12. Crystal structure of the catalytic domain of HIV-1 integrase: Similarity to other polynucleotidyl transferases
13. PHASES-95: A program package for processing and analyzing diffraction data from macromolecules
14. Integrating DNA: Transposases and retroviral integrases
15. DNA recognition by proteins with the helix-turn-helix motif
16. Dali/FSSP classification of three-dimensional protein folds
17. Protein secondary structure prediction based on position-specific scoring matrices
18. Mismatch repair of deaminated 5-methyl-cytosine
19. Improved methods for building protein models in electron density maps and the location of errors in these models
20. Single active site catalysis of the successive phosphoryl transfer steps by DNA transposases: Insights from phosphorothioate stereoselectivity
21. Refinement of Eco RI endonuclease crystal structure: A revised protein chain tracing
22. Tn10 and IS10 transposition and chromosome rearrangements: Mechanisms and regulation in vivo and in vitro
23. 2+ binding to the active site of EcoRV endonuclease: A crystallographic study of complexes with substrate and product DNA at 2 A resolution
24. Toroidal structure of δ-exonuclease
25. Type II restriction endonucleases: Structural, functional, and evolutionary relationships
26. Mutational analysis of the Mu transposase. Contributions of two distinct regions of domain II to recombination
27. Crystal structure and evolution of a transfer RNA splicing enzyme
28. Functional domains in Fok I restriction endonuclease
29. Bacterial genes mutL, mutS, and dcm participate in repair of mismatches at 5-methylcytosine sites
30. Switching from cut-and-paste to replicative Tn7 transposition
31. Structure of catabolite gene activator protein at 2.9 Å resolution suggests binding to left-handed B-DNA
32. Raster3D: Photorealistic molecular graphics
33. Transpositional recombination: Mechanistic insights from studies of Mu and other elements
34. Structure of restriction endonuclease BamHI and its relationship to EcoRI
35. Processing of X-ray diffraction data collected in oscillation mode
36. The Tc1/mariner transposon family
37. Crystal structure of globular domain of histone H5 and its implications for nucleosome binding
38. The Tn5 transposon
39. Structure of the bacteriophage Mu transposase core: A common structural motif for DNA transposition and retroviral integration
40. The Tn7 transposase is a heteromeric complex in which DNA breakage and joining activities are distributed between different gene products
41. Host proteins can stimulate Tn7 transposition: A novel role for the ribosomal protein L29 and the acyl carrier protein
42. Structure-based redesign of the catalysis/metal binding site of Cfr10I restriction endonuclease reveals importance of spatial rather than sequence conservation of active centre residues
43. Automated structure solution for MIR and MAD
44. Knowledge-based B-factor restraints for the refinement of proteins
45. Crystallographic and functional studies of very short patch repair endonuclease
46. Recognition of a TG mismatch: The crystal structure of very short patch repair endonucleus in complex with a DNA duplex
47. The role of metals in catalysis by the restriction endonuclease BamHI
48. Structure of the multimodular endonuclease FokI bound to DNA
49. Structure of FokI has implications for DNA cleavage
50. Resolution of phase ambiguity in macromolecular crystallography
51. The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments