-
1
-
-
0000001528
-
Metal activation of enzymes in nucleic acid biochemistry
-
Cowan, J.A. Metal activation of enzymes in nucleic acid biochemistry. Chem. Rev. 98, 1067-1088 (1998).
-
(1998)
Chem. Rev.
, vol.98
, pp. 1067-1088
-
-
Cowan, J.A.1
-
2
-
-
0031104841
-
The FEN1 family of structure-specific nucleases in eukaryotic DNA replication, recombination and repair
-
Lieber, M.R. The FEN1 family of structure-specific nucleases in eukaryotic DNA replication, recombination and repair. Bioessays 19, 233-240 (1997).
-
(1997)
Bioessays
, vol.19
, pp. 233-240
-
-
Lieber, M.R.1
-
3
-
-
0032167693
-
Structure-specific DNA cleavage by 5′ nucleases
-
Ceska, T.A. & Sayers, J.R. Structure-specific DNA cleavage by 5′ nucleases. Trends Biochem. Sci. 23, 331-336 (1998).
-
(1998)
Trends Biochem. Sci.
, vol.23
, pp. 331-336
-
-
Ceska, T.A.1
Sayers, J.R.2
-
4
-
-
0037162498
-
Haploinsufficiency of flap endonuclease (Fen1) leads to rapid tumor progression
-
Kucherlapati, M., et al. Haploinsufficiency of flap endonuclease (Fen1) leads to rapid tumor progression. Proc. Natl. Acad. Sci. USA 99, 9924-9929 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 9924-9929
-
-
Kucherlapati, M.1
-
5
-
-
0028281443
-
The characterisation of a mammalian DNA structure-specific endonuclease
-
Harrington, J.J. & Lieber, M.R. The characterisation of a mammalian DNA structure-specific endonuclease. EMBO J. 13, 1235-1246 (1994).
-
(1994)
EMBO J.
, vol.13
, pp. 1235-1246
-
-
Harrington, J.J.1
Lieber, M.R.2
-
6
-
-
0027215222
-
Structure-specific endonucleolytic cleavage of nucleic acids by eubacterial DNA polymerases
-
Lyamichev, V., Brow, M.A.D. & Dahlberg, J.E. Structure-specific endonucleolytic cleavage of nucleic acids by eubacterial DNA polymerases. Science 260, 778-783 (1993).
-
(1993)
Science
, vol.260
, pp. 778-783
-
-
Lyamichev, V.1
Brow, M.A.D.2
Dahlberg, J.E.3
-
7
-
-
0026568379
-
Streptococcus pneumoniae DNA polymerase I lacks 3′-5′ exonuclease activity: Localization of the 5′-3′ exonucleolytic domain
-
Diaz, A., Pons, M.E., Lacks, S.A. & Lopez, P. Streptococcus pneumoniae DNA polymerase I lacks 3′-5′ exonuclease activity: localization of the 5′-3′ exonucleolytic domain. J. Bacteriol. 174, 2014-2024 (1992).
-
(1992)
J. Bacteriol.
, vol.174
, pp. 2014-2024
-
-
Diaz, A.1
Pons, M.E.2
Lacks, S.A.3
Lopez, P.4
-
8
-
-
0035958936
-
Bacteriophage T4 RNase H removes both RNA primers and adjacent DNA from the 5′ end of lagging strand fragments
-
Bhagwat, M. & Nossal, N.G. Bacteriophage T4 RNase H removes both RNA primers and adjacent DNA from the 5′ end of lagging strand fragments. J. Biol. Chem. 276, 28516-28524 (2001).
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 28516-28524
-
-
Bhagwat, M.1
Nossal, N.G.2
-
9
-
-
0030929525
-
Creation and removal of embedded ribonucleotides in chromosomal DNA during mammalian Okazaki fragment processing
-
Rumbaugh, J.A., Murante, R.S., Shi, S. & Bambara, R.A. Creation and removal of embedded ribonucleotides in chromosomal DNA during mammalian Okazaki fragment processing. J. Biol. Chem. 272, 22591-22599 (1997).
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 22591-22599
-
-
Rumbaugh, J.A.1
Murante, R.S.2
Shi, S.3
Bambara, R.A.4
-
11
-
-
0028983795
-
Crystal structure of Thermus aquaticus DNA polymerase
-
Kim, Y. et al. Crystal structure of Thermus aquaticus DNA polymerase. Nature 376, 612-616 (1995).
-
(1995)
Nature
, vol.376
, pp. 612-616
-
-
Kim, Y.1
-
12
-
-
2142860722
-
Structure of bacteriophage T4 RNase H, a 5′-3′ RNA-DNA and DNA-DNA exonuclease with sequence similarity to the RAD 2 family of eukaryotic proteins
-
Mueser, T.C., Nossal, N.G. & Hyde, C.C. Structure of bacteriophage T4 RNase H, a 5′-3′ RNA-DNA and DNA-DNA exonuclease with sequence similarity to the RAD2 family of eukaryotic proteins. Cell 85, 1101-1112 (1996).
-
(1996)
Cell
, vol.85
, pp. 1101-1112
-
-
Mueser, T.C.1
Nossal, N.G.2
Hyde, C.C.3
-
13
-
-
0030002197
-
A helical arch allowing single-stranded DNA to thread through T5 5′ exonuclease
-
Ceska, T.A., Sayers, J.R., Stier, G. & Suck, D. A helical arch allowing single-stranded DNA to thread through T5 5′ exonuclease. Nature 382, 90-93 (1996).
-
(1996)
Nature
, vol.382
, pp. 90-93
-
-
Ceska, T.A.1
Sayers, J.R.2
Stier, G.3
Suck, D.4
-
14
-
-
0031873411
-
The crystal structure of flap endonuclease-1 from Methanococcus jannaschii
-
Hwang, K.Y., Baek, K., Kim, H.Y. & Cho, Y. The crystal structure of flap endonuclease-1 from Methanococcus jannaschii. Nat. Struct. Biol. 5, 707-713 (1998).
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 707-713
-
-
Hwang, K.Y.1
Baek, K.2
Kim, H.Y.3
Cho, Y.4
-
15
-
-
0032475933
-
Structure of the DNA repair and replication endonuclease and exonuclease FEN1: Coupling DNA and PCNA binding to FEN1 activity
-
Hosfield, D.J., Mol, C.D., Shen, B. & Tainer, J.A. Structure of the DNA repair and replication endonuclease and exonuclease FEN1: coupling DNA and PCNA binding to FEN1 activity. Cell 95, 135-146 (1998).
-
(1998)
Cell
, vol.95
, pp. 135-146
-
-
Hosfield, D.J.1
Mol, C.D.2
Shen, B.3
Tainer, J.A.4
-
16
-
-
0037020251
-
Molecular structure and novel DNA binding sites located in loops of flap endonuclease-1 from Pyrococcus horikoshii
-
Matsui, E., et al. Molecular structure and novel DNA binding sites located in loops of flap endonuclease-1 from Pyrococcus horikoshii. J. Biol. Chem. 277, 37840-37847 (2002).
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 37840-37847
-
-
Matsui, E.1
-
17
-
-
0026019625
-
Structural basis for the 3′-5′ exonuclease activity of Escherichia coli DNA polymerase I: A two metal ion mechanism
-
Beese, L.S. & Steitz, T.A. Structural basis for the 3′-5′ exonuclease activity of Escherichia coli DNA polymerase I: a two metal ion mechanism. EMBO J. 10, 25-33 (1991).
-
(1991)
EMBO J.
, vol.10
, pp. 25-33
-
-
Beese, L.S.1
Steitz, T.A.2
-
18
-
-
0030692045
-
Identification of residues of T4 RNase H required for catalysis and DNA binding
-
Bhagwat, M., Meara, D. & Nossal, N.G. Identification of residues of T4 RNase H required for catalysis and DNA binding J. Biol. Chem. 272, 28531-28538 (1997).
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 28531-28538
-
-
Bhagwat, M.1
Meara, D.2
Nossal, N.G.3
-
19
-
-
0032519840
-
Purification and properties of the 5′-3′ exonuclease D190A mutant of DNA polymerase I from Streptococcus pneumoniae
-
Amblar, M. & Lopez, P. Purification and properties of the 5′-3′ exonuclease D190A mutant of DNA polymerase I from Streptococcus pneumoniae. Eur. J. Biochem. 252, 124-132 (1998).
-
(1998)
Eur. J. Biochem.
, vol.252
, pp. 124-132
-
-
Amblar, M.1
Lopez, P.2
-
20
-
-
0030444635
-
Deoxy- and dideoxynucleotide discrimination and identification of critical 5′ nuclease domain residues of the DNA polymerase I from Mycobacterium tuberculosis
-
Mizrahi, V. & Huberts, P. Deoxy- and dideoxynucleotide discrimination and identification of critical 5′ nuclease domain residues of the DNA polymerase I from Mycobacterium tuberculosis. Nucleic Acids Res. 24, 4845-4852 (1996).
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 4845-4852
-
-
Mizrahi, V.1
Huberts, P.2
-
21
-
-
0031547960
-
Biochemical and mutational studies of the 5′-3′ exonuclease of DNA polymerase I of Escherichia coli
-
Xu, Y. et al. Biochemical and mutational studies of the 5′-3′ exonuclease of DNA polymerase I of Escherichia coli. J. Mol. Biol. 268, 284-302 (1997).
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 284-302
-
-
Xu, Y.1
-
22
-
-
0035839588
-
Contacts between the 5′ nuclease of DNA polymerase I and its DNA substrate
-
Xu, Y., Potapova, O., Leschziner, A.E., Grindley, N.D. & Joyce, C.M. Contacts between the 5′ nuclease of DNA polymerase I and its DNA substrate. J. Biol. Chem. 276, 30167-30177 (2001).
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 30167-30177
-
-
Xu, Y.1
Potapova, O.2
Leschziner, A.E.3
Grindley, N.D.4
Joyce, C.M.5
-
23
-
-
0030872252
-
Functional analysis of point mutations in human flap endonuclease-1 active site
-
Shen, B., Nolan, J.P., Sklar, L.A. & Park, M.S. Functional analysis of point mutations in human flap endonuclease-1 active site. Nucleic Acids Res. 25, 3332-3338 (1997).
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3332-3338
-
-
Shen, B.1
Nolan, J.P.2
Sklar, L.A.3
Park, M.S.4
-
24
-
-
0035376980
-
Biochemical analysis of point mutations in the 5′-3′ exonuclease of DNA polymerase I of Streptococcus pneumoniae. Functional and structural implications
-
Amblar, M., de Lacoba, M.G., Corrales, M.A. & Lopez, P. Biochemical analysis of point mutations in the 5′-3′ exonuclease of DNA polymerase I of Streptococcus pneumoniae. Functional and structural implications. J. Biol. Chem. 276, 19172-19181 (2001).
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 19172-19181
-
-
Amblar, M.1
De Lacoba, M.G.2
Corrales, M.A.3
Lopez, P.4
-
25
-
-
0037416184
-
Dynamic evidence for metal ion catalysis in the reaction mediated by a flap endonuclease
-
Tock, M.R., Frary, E., Sayers, J.R. & Grasby, J.A. Dynamic evidence for metal ion catalysis in the reaction mediated by a flap endonuclease. EMBO J. 22, 995-1004 (2003).
-
(2003)
EMBO J.
, vol.22
, pp. 995-1004
-
-
Tock, M.R.1
Frary, E.2
Sayers, J.R.3
Grasby, J.A.4
-
26
-
-
0034881374
-
Calorimetric techniques in the study of high-order ONA-drug interactions
-
Haq, I., Chowdhry, B.Z. & Jenkins, T.C. Calorimetric techniques in the study of high-order ONA-drug interactions. Methods Enzymol. 340, 109-149 (2001).
-
(2001)
Methods Enzymol.
, vol.340
, pp. 109-149
-
-
Haq, I.1
Chowdhry, B.Z.2
Jenkins, T.C.3
-
27
-
-
0024356301
-
Rapid measurement of binding constants and heats of binding using a new titration calorimeter
-
Wiseman, T., Williston, S., Brandts, J.F. & Lin, L.N. Rapid measurement of binding constants and heats of binding using a new titration calorimeter. Anal. Biochem. 179, 131-137 (1989).
-
(1989)
Anal. Biochem.
, vol.179
, pp. 131-137
-
-
Wiseman, T.1
Williston, S.2
Brandts, J.F.3
Lin, L.N.4
-
28
-
-
0023664031
-
Microcalorimetric investigation of the interactions in the ternary complex calmodulin-calcium-melittin
-
Milos, M., Schaer, J.J., Comte, M. & Cox, J.A. Microcalorimetric investigation of the interactions in the ternary complex calmodulin-calcium-melittin. J. Biol. Chem. 262, 2746-2749 (1987).
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 2746-2749
-
-
Milos, M.1
Schaer, J.J.2
Comte, M.3
Cox, J.A.4
-
30
-
-
0032733278
-
Quantitative evaluation of metal ion binding to PvuII restriction endonuclease
-
Jose, T.J., Conlan, L.H. & Dupureur, C.M. Quantitative evaluation of metal ion binding to PvuII restriction endonuclease. J. Biol. Inor. Chem. 4, 814-823 (1999).
-
(1999)
J. Biol. Inor. Chem.
, vol.4
, pp. 814-823
-
-
Jose, T.J.1
Conlan, L.H.2
Dupureur, C.M.3
-
32
-
-
0032538537
-
Newly discovered archaebacterial flap endonucleases show a structure-specific mechanism for DNA substrate binding and catalysis resembling human flap endonuclease-1
-
Hosfield, D.J., Frank, G., Weng, Y., Tainer, J.A. & Shen, B. Newly discovered archaebacterial flap endonucleases show a structure-specific mechanism for DNA substrate binding and catalysis resembling human flap endonuclease-1. J. Biol. Chem. 273, 27154-27161 (1998).
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 27154-27161
-
-
Hosfield, D.J.1
Frank, G.2
Weng, Y.3
Tainer, J.A.4
Shen, B.5
-
33
-
-
0025114469
-
Properties of overexpressed phage T5 D15 exonuclease
-
Sayers, J.R. & Eckstein, F. Properties of overexpressed phage T5 D15 exonuclease. J. Biol. Chem. 265, 18311-18317 (1990).
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 18311-18317
-
-
Sayers, J.R.1
Eckstein, F.2
-
34
-
-
0028934112
-
Specific DNA recognition by EcoRV restriction endonuclease induced by calcium ions
-
Vipond, I.B. & Halford, S.E. Specific DNA recognition by EcoRV restriction endonuclease induced by calcium ions. Biochemistry (US), 34, 1113-1119 (1995).
-
(1995)
Biochemistry (US)
, vol.34
, pp. 1113-1119
-
-
Vipond, I.B.1
Halford, S.E.2
-
35
-
-
0025815420
-
A single-strand specific endonuclease activity copurifies with overexpressed T5 D15 exonuclease
-
Sayers, J.R. & Eckstein, F. A single-strand specific endonuclease activity copurifies with overexpressed T5 D15 exonuclease. Nucleic Acids Res. 19, 4127-4132 (1991).
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 4127-4132
-
-
Sayers, J.R.1
Eckstein, F.2
-
36
-
-
0030922798
-
Structure-specific DNA binding by bacteriophage T5 5′-3′ exonuclease
-
Garforth, S.J. & Sayers, J.R. Structure-specific DNA binding by bacteriophage T5 5′-3′ exonuclease. Nucleic Acids Res. 25, 3801-3807 (1997).
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3801-3807
-
-
Garforth, S.J.1
Sayers, J.R.2
-
37
-
-
0029838386
-
Viral polymerase-associated 5′-3′ exonucleases: Expression, purification, and uses
-
Sayers, J.R. Viral polymerase-associated 5′-3′ exonucleases: expression, purification, and uses. Methods Enzymol. 275, 227-238 (1996).
-
(1996)
Methods Enzymol.
, vol.275
, pp. 227-238
-
-
Sayers, J.R.1
-
38
-
-
0018815074
-
Purification and properties of Neurospora crassa endo-exonuclease, an enzyme which can be converted to a single-strand specific endonuclease
-
Fraser, M.J. Purification and properties of Neurospora crassa endo-exonuclease, an enzyme which can be converted to a single-strand specific endonuclease. Methods Enzymol. 65, 255-263 (1980).
-
(1980)
Methods Enzymol.
, vol.65
, pp. 255-263
-
-
Fraser, M.J.1
-
39
-
-
0033524487
-
Mutagenesis of conserved lysine residues in bacteriophage T5 5′-3′ exonuclease suggests separate mechanisms of endo- and exonucleolytic cleavage
-
Garforth, S.J., Ceska, T.A., Suck, D. & Sayers, J.R. Mutagenesis of conserved lysine residues in bacteriophage T5 5′-3′ exonuclease suggests separate mechanisms of endo- and exonucleolytic cleavage. Proc. Natl. Acad. Sci. USA 96, 38-43 (1999).
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 38-43
-
-
Garforth, S.J.1
Ceska, T.A.2
Suck, D.3
Sayers, J.R.4
-
40
-
-
0027370305
-
Preliminary crystallographic studies on the D15 5′-3′ exonuclease from phage T5
-
Ceska, T.A., Sayers, J.R., Eckstein, F. & Suck, D. Preliminary crystallographic studies on the D15 5′-3′ exonuclease from phage T5. J. Mol. Biol. 233, 179-182 (1993).
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 179-182
-
-
Ceska, T.A.1
Sayers, J.R.2
Eckstein, F.3
Suck, D.4
-
41
-
-
85046526624
-
Evaluation of single crystal X-ray diffraction data from a position sensitive detector
-
Kabsch, W. Evaluation of single crystal X-ray diffraction data from a position sensitive detector. J. Appl. Crystallogr. 21, 916-924 (1988).
-
(1988)
J. Appl. Crystallogr.
, vol.21
, pp. 916-924
-
-
Kabsch, W.1
-
42
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project, Number 4. The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D 50, 760-763 (1994).
-
(1994)
Acta Crystallogr. D
, vol.50
, pp. 760-763
-
-
-
43
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger, A.T. et al. Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr. D 54, 905-921 (1998).
-
(1998)
Acta Crystallogr. D
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
-
44
-
-
0033120221
-
New features and enhancements in the X-PLOR computer program
-
Badger, J., Kumar, R.A., Yip, P. & Szalma, S. New features and enhancements in the X-PLOR computer program. Proteins 35, 25-33 (1999).
-
(1999)
Proteins
, vol.35
, pp. 25-33
-
-
Badger, J.1
Kumar, R.A.2
Yip, P.3
Szalma, S.4
-
45
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones, T.A., Zou, J.Y., Cowan, S.W. & Kjeldgaard. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A 47, 110-119 (1991).
-
(1991)
Acta Crystallogr. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard4
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