-
1
-
-
0030014783
-
DNA topoisomerases
-
Wang, J. C. 1996. DNA topoisomerases. Annu. Rev. Biochem. 65: 635-692.
-
(1996)
Annu. Rev. Biochem.
, vol.65
, pp. 635-692
-
-
Wang, J.C.1
-
2
-
-
0034923502
-
DNA topoisomerases: Structure, function, and mechanism
-
Champoux, J. J. 2001. DNA topoisomerases: structure, function, and mechanism. Annu. Rev. Biochem. 70:369-413.
-
(2001)
Annu. Rev. Biochem.
, vol.70
, pp. 369-413
-
-
Champoux, J.J.1
-
3
-
-
2442599792
-
Structure, molecular mechanisms, and evolutionary relationships in DNA topoisomerases
-
Corbett, K. D., and J. M. Berger. 2004. Structure, molecular mechanisms, and evolutionary relationships in DNA topoisomerases. Annu. Rev. Biophys. Biomol. Struct. 33:95-118.
-
(2004)
Annu. Rev. Biophys. Biomol. Struct.
, vol.33
, pp. 95-118
-
-
Corbett, K.D.1
Berger, J.M.2
-
4
-
-
50649101663
-
DNA topoisomerases: Harnessing and constraining energy to govern chromosome topology
-
Schoeffler, A. J., and J. M. Berger. 2008. DNA topoisomerases: harnessing and constraining energy to govern chromosome topology. Q. Rev. Biophys. 41:41-101.
-
(2008)
Q. Rev. Biophys.
, vol.41
, pp. 41-101
-
-
Schoeffler, A.J.1
Berger, J.M.2
-
5
-
-
22744457037
-
Human DNA topoisomerase I: Relaxation, roles, and damage control
-
Leppard, J. B., and J. J. Champoux. 2005. Human DNA topoisomerase I: relaxation, roles, and damage control. Chromosoma. 114:75-85.
-
(2005)
Chromosoma
, vol.114
, pp. 75-85
-
-
Leppard, J.B.1
Champoux, J.J.2
-
7
-
-
0030045003
-
Structure and mechanism of DNA topoisomerase II
-
Berger, J. M., S. J. Gamblin, J. C.Wang. 1996. Structure and mechanism of DNA topoisomerase II. Nature. 379:225-232.
-
(1996)
Nature
, vol.379
, pp. 225-232
-
-
Berger, J.M.1
Gamblin, S.J.2
Wang, J.C.3
-
8
-
-
0032489634
-
Crystal structures of human topoisomerase I in covalent and noncovalent complexes with DNA
-
Redinbo, M. R., L. Stewart, W. G. Hol. 1998. Crystal structures of human topoisomerase I in covalent and noncovalent complexes with DNA. Science. 279:1504-1513.
-
(1998)
Science
, vol.279
, pp. 1504-1513
-
-
Redinbo, M.R.1
Stewart, L.2
Hol, W.G.3
-
9
-
-
35548983057
-
Tryptophane- 205 of human topoisomerase I is essential for camptothecin inhibition of negative but not positive supercoil removal
-
Frøhlich, R. F., C. Veigaard, B. R. Knudsen. 2007. Tryptophane- 205 of human topoisomerase I is essential for camptothecin inhibition of negative but not positive supercoil removal. Nucleic Acids Res. 35:6170-6180.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 6170-6180
-
-
Frøhlich, R.F.1
Veigaard, C.2
Knudsen, B.R.3
-
10
-
-
0031566428
-
Reconstitution of human topoisomerase I by fragment complementation
-
Stewart, L., G. C. Ireton, and J. J. Champoux. 1997. Reconstitution of human topoisomerase I by fragment complementation. J. Mol. Biol. 269:355-372.
-
(1997)
J. Mol. Biol.
, vol.269
, pp. 355-372
-
-
Stewart, L.1
Ireton, G.C.2
Champoux, J.J.3
-
11
-
-
0347130921
-
Regions within the N-terminal domain of human topoisomerase I exert important functions during strand rotation and DNA binding
-
Frøhlich, R. F., F. F. Andersen, B. R. Knudsen. 2004. Regions within the N-terminal domain of human topoisomerase I exert important functions during strand rotation and DNA binding. J. Mol. Biol. 336:93-103.
-
(2004)
J. Mol. Biol.
, vol.336
, pp. 93-103
-
-
Frøhlich, R.F.1
Andersen, F.F.2
Knudsen, B.R.3
-
12
-
-
0029869828
-
The domain organization of human topoisomerase I
-
Stewart, L., G. C. Ireton, and J. J. Champoux. 1996. The domain organization of human topoisomerase I. J. Biol. Chem. 271:7602-7608.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 7602-7608
-
-
Stewart, L.1
Ireton, G.C.2
Champoux, J.J.3
-
13
-
-
0015262632
-
An activity from mammalian cells that untwists superhelical DNA-A possible swivel for DNA replication (polyoma-ethidium bromide-mouse-embryo cells-dye binding assay)
-
Champoux, J. J., and R. Dulbecco. 1972. An activity from mammalian cells that untwists superhelical DNA-a possible swivel for DNA replication (polyoma-ethidium bromide-mouse-embryo cells-dye binding assay). Proc. Natl. Acad. Sci. USA. 69:143-146.
-
(1972)
Proc. Natl. Acad. Sci. USA
, vol.69
, pp. 143-146
-
-
Champoux, J.J.1
Dulbecco, R.2
-
14
-
-
0035281522
-
Irinotecan in the treatment of colorectal cancer: Clinical overview
-
Vanhoefer, U., A. Harstrick, Y. M. Rustum. 2001. Irinotecan in the treatment of colorectal cancer: clinical overview. J. Clin. Oncol. 19:1501-1518.
-
(2001)
J. Clin. Oncol.
, vol.19
, pp. 1501-1518
-
-
Vanhoefer, U.1
Harstrick, A.2
Rustum, Y.M.3
-
15
-
-
0028957974
-
Mutation at the catalytic site of topoisomerase I in CEM/C2, a human leukemia cell line resistant to camptothecin
-
Fujimori, A., W. G. Harker, Y. Pommier. 1995. Mutation at the catalytic site of topoisomerase I in CEM/C2, a human leukemia cell line resistant to camptothecin. Cancer Res. 55:1339-1346.
-
(1995)
Cancer Res
, vol.55
, pp. 1339-1346
-
-
Fujimori, A.1
Harker, W.G.2
Pommier, Y.3
-
16
-
-
0032489675
-
A model for the mechanism of human topoisomerase I
-
Stewart, L., M. R. Redinbo, J. J. Champoux. 1998. A model for the mechanism of human topoisomerase I. Science. 279:1534-1541.
-
(1998)
Science
, vol.279
, pp. 1534-1541
-
-
Stewart, L.1
Redinbo, M.R.2
Champoux, J.J.3
-
17
-
-
15844383117
-
Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB
-
Koster, D. A., V. Croquette, N. H. Dekker. 2005. Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB. Nature. 434:671-674.
-
(2005)
Nature
, vol.434
, pp. 671-674
-
-
Koster, D.A.1
Croquette, V.2
Dekker, N.H.3
-
18
-
-
0032549763
-
Conservation of structure and mechanism between eukaryotic topoisomerase I and site-specific recombinases
-
Cheng, C., P. Kussie, S. Shuman. 1998. Conservation of structure and mechanism between eukaryotic topoisomerase I and site-specific recombinases. Cell. 92:841-850.
-
(1998)
Cell
, vol.92
, pp. 841-850
-
-
Cheng, C.1
Kussie, P.2
Shuman, S.3
-
19
-
-
29144455886
-
Rotation of DNA around intact strand in human topoisomerase I implies distinct mechanisms for positive and negative supercoil relaxation
-
Sari, L., and I. Andricioaei. 2005. Rotation of DNA around intact strand in human topoisomerase I implies distinct mechanisms for positive and negative supercoil relaxation. Nucleic Acids Res. 33:6621-6634.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 6621-6634
-
-
Sari, L.1
Andricioaei, I.2
-
20
-
-
0344702740
-
Locking the DNA topoisomerase I protein clamp inhibits DNA rotation and induces cell lethality
-
Woo, M. H., C. Losasso, M. A. Bjornsti. 2003. Locking the DNA topoisomerase I protein clamp inhibits DNA rotation and induces cell lethality. Proc. Natl. Acad. Sci. USA. 100:13767-13772.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 13767-13772
-
-
Woo, M.H.1
Losasso, C.2
Bjornsti, M.A.3
-
21
-
-
0037948842
-
DNA relaxation by human topoisomerase I occurs in the closed clamp conformation of the protein
-
Carey, J. F., S. J. Schultz, J. J. Champoux. 2003. DNA relaxation by human topoisomerase I occurs in the closed clamp conformation of the protein. Proc. Natl. Acad. Sci. USA. 100:5640-5645.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 5640-5645
-
-
Carey, J.F.1
Schultz, S.J.2
Champoux, J.J.3
-
22
-
-
55549125213
-
Disulfide cross-links reveal conserved features of DNA topoisomerase I architecture and a role for the N-terminus in clamp closure
-
Palle, K., L. Pattarello, M. A. Bjornsti. 2008. Disulfide cross-links reveal conserved features of DNA topoisomerase I architecture and a role for the N-terminus in clamp closure. J. Biol. Chem. 283:27767-27775.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 27767-27775
-
-
Palle, K.1
Pattarello, L.2
Bjornsti, M.A.3
-
23
-
-
34548403896
-
Torque and dynamics of linking number relaxation in stretched supercoiled DNA
-
Marko, J. F. 2007. Torque and dynamics of linking number relaxation in stretched supercoiled DNA. Phys. Rev. E. 76:021926.
-
(2007)
Phys. Rev. E.
, vol.76
, pp. 021926
-
-
Marko, J.F.1
-
24
-
-
34447509295
-
Antitumor drugs impede DNA uncoiling by topoisomerase I
-
Koster, D. A., K. Palle, N. H. Dekker. 2007. Antitumor drugs impede DNA uncoiling by topoisomerase I. Nature. 448:213-217.
-
(2007)
Nature
, vol.448
, pp. 213-217
-
-
Koster, D.A.1
Palle, K.2
Dekker, N.H.3
-
25
-
-
42449159316
-
Single-molecule observations of topotecan-mediated TopoIB activity at a unique DNA sequence
-
Koster, D. A., F. Czerwinski, N. H. Dekker. 2008. Single-molecule observations of topotecan-mediated TopoIB activity at a unique DNA sequence. Nucleic Acids Res. 36:2301-2310.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 2301-2310
-
-
Koster, D.A.1
Czerwinski, F.2
Dekker, N.H.3
-
27
-
-
84986519238
-
The weighted histogram analysis method for free-energy calculations on biomolecules
-
Kumar, S., D. Bouzida, J. Rosenberg. 1992. The weighted histogram analysis method for free-energy calculations on biomolecules. J. Comput. Chem. 13:1011-1021.
-
(1992)
J. Comput. Chem.
, vol.13
, pp. 1011-1021
-
-
Kumar, S.1
Bouzida, D.2
Rosenberg, J.3
-
29
-
-
35548963462
-
Configuration-dependent diffusion can shift the kinetic transition state and barrier height of protein folding
-
Chahine, J., R. J. Oliveira, J. Wang. 2007. Configuration-dependent diffusion can shift the kinetic transition state and barrier height of protein folding. Proc. Natl. Acad. Sci. USA. 104:14646-14651.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 14646-14651
-
-
Chahine, J.1
Oliveira, R.J.2
Wang, J.3
-
30
-
-
0000710672
-
Diffusive dynamics of the reaction coordinate for protein folding funnels
-
Socci, N., J. Onuchic, and P. Wolynes. 1996. Diffusive dynamics of the reaction coordinate for protein folding funnels. J. Chem. Phys. 104:5860-5868.
-
(1996)
J. Chem. Phys.
, vol.104
, pp. 5860-5868
-
-
Socci, N.1
Onuchic, J.2
Wolynes, P.3
-
32
-
-
0017643231
-
Hydrodynamic properties and structure of fd virus
-
Newman, J., H. L. Swinney, and L. A. Day. 1977. Hydrodynamic properties and structure of fd virus. J. Mol. Biol. 116:593-603.
-
(1977)
J. Mol. Biol.
, vol.116
, pp. 593-603
-
-
Newman, J.1
Swinney, H.L.2
Day, L.A.3
-
33
-
-
0000579305
-
DNA persistence length revisited
-
Lu, Y., B. Weers, and N. C. Stellwagen. 2001-2002. DNA persistence length revisited. Biopolymers. 61:261-275.
-
(2001)
Biopolymers
, vol.61
, pp. 261-275
-
-
Lu, Y.1
Weers, B.2
Stellwagen, N.C.3
-
34
-
-
41949110996
-
Abrupt buckling transition observed during the plectoneme formation of individual DNA molecules
-
Forth, S., C. Deufel, M. D. Wang. 2008. Abrupt buckling transition observed during the plectoneme formation of individual DNA molecules. Phys. Rev. Lett. 100:148301.
-
(2008)
Phys. Rev. Lett.
, vol.100
, pp. 148301
-
-
Forth, S.1
Deufel, C.2
Wang, M.D.3
-
35
-
-
68849118253
-
Twist-stretch coupling and phase transition during DNA supercoiling
-
Sheinin, M. Y., and M. D. Wang. 2009. Twist-stretch coupling and phase transition during DNA supercoiling. Phys. Chem. Chem. Phys. 11:4800-4803.
-
(2009)
Phys. Chem. Chem. Phys.
, vol.11
, pp. 4800-4803
-
-
Sheinin, M.Y.1
Wang, M.D.2
-
36
-
-
77955702689
-
Twisting and stretching a DNA molecule leads to structural transitions
-
Strick, T., J. Allemand, V. Croquette. 1999. Twisting and stretching a DNA molecule leads to structural transitions. Biol. Phys. 487: 249-270.
-
(1999)
Biol. Phys.
, vol.487
, pp. 249-270
-
-
Strick, T.1
Allemand, J.2
Croquette, V.3
-
37
-
-
0041305824
-
Structural transitions and elasticity from torque measurements on DNA
-
Bryant, Z., M. D. Stone, C. Bustamante. 2003. Structural transitions and elasticity from torque measurements on DNA. Nature. 424: 338-341.
-
(2003)
Nature
, vol.424
, pp. 338-341
-
-
Bryant, Z.1
Stone, M.D.2
Bustamante, C.3
-
38
-
-
33750829427
-
On structural transitions, thermodynamic equilibrium, and the phase diagram of DNA and RNA duplexes under torque and tension
-
Wereszczynski, J., and I. Andricioaei. 2006. On structural transitions, thermodynamic equilibrium, and the phase diagram of DNA and RNA duplexes under torque and tension. Proc. Natl. Acad. Sci. USA. 103:16200-16205.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 16200-16205
-
-
Wereszczynski, J.1
Andricioaei, I.2
-
39
-
-
0026032557
-
Molecular cloning of a cDNA of a camptothecin-resistant human DNA topoisomerase I and identification of mutation sites
-
Tamura, H., C. Kohchi, K. Nishikawa. 1991. Molecular cloning of a cDNA of a camptothecin-resistant human DNA topoisomerase I and identification of mutation sites. Nucleic Acids Res. 19:69-75.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 69-75
-
-
Tamura, H.1
Kohchi, C.2
Nishikawa, K.3
-
40
-
-
0033663604
-
Topoisomerase I-mediated DNA damage
-
Pourquier, P., and Y. Pommier. 2001. Topoisomerase I-mediated DNA damage. Adv. Cancer Res. 80:189-216.
-
(2001)
Adv. Cancer Res
, vol.80
, pp. 189-216
-
-
Pourquier, P.1
Pommier, Y.2
-
41
-
-
0037180432
-
The mechanism of topoisomerase I poisoning by a camptothecin analog
-
Staker, B. L., K. Hjerrild, L. Stewart. 2002. The mechanism of topoisomerase I poisoning by a camptothecin analog. Proc. Natl. Acad. Sci. USA. 99:15387-15392.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 15387-15392
-
-
Staker, B.L.1
Hjerrild, K.2
Stewart, L.3
-
42
-
-
2542425518
-
Mechanisms of camptothecin resistance by human topoisomerase I mutations
-
Chrencik, J. E., B. L. Staker, M. R. Redinbo. 2004. Mechanisms of camptothecin resistance by human topoisomerase I mutations. J. Mol. Biol. 339:773-784.
-
(2004)
J. Mol. Biol.
, vol.339
, pp. 773-784
-
-
Chrencik, J.E.1
Staker, B.L.2
Redinbo, M.R.3
-
43
-
-
34250639926
-
The open state of human topoisomerase I as probed by molecular dynamics simulation
-
Chillemi, G., A. Bruselles, A. Desideri. 2007. The open state of human topoisomerase I as probed by molecular dynamics simulation. Nucleic Acids Res. 35:3032-3038.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 3032-3038
-
-
Chillemi, G.1
Bruselles, A.2
Desideri, A.3
-
44
-
-
34247627894
-
Single-molecule measurements of the opening and closing of the DNA gate by eukaryotic topoisomerase II
-
Smiley, R. D., T. R. Collins, T. S. Hsieh. 2007. Single-molecule measurements of the opening and closing of the DNA gate by eukaryotic topoisomerase II. Proc. Natl. Acad. Sci. USA. 104:4840-4845.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 4840-4845
-
-
Smiley, R.D.1
Collins, T.R.2
Hsieh, T.S.3
-
45
-
-
17444366080
-
Simultaneous, coincident optical trapping and single-molecule fluorescence
-
Lang, M. J., P. M. Fordyce, S. M. Block. 2004. Simultaneous, coincident optical trapping and single-molecule fluorescence. Nat. Methods. 1:133-139.
-
(2004)
Nat. Methods.
, vol.1
, pp. 133-139
-
-
Lang, M.J.1
Fordyce, P.M.2
Block, S.M.3
-
46
-
-
35348897239
-
Fluorescence-force spectroscopy maps two-dimensional reaction landscape of the Holliday junction
-
Hohng, S., R. Zhou, T. Ha. 2007. Fluorescence-force spectroscopy maps two-dimensional reaction landscape of the Holliday junction. Science. 318:279-283.
-
(2007)
Science
, vol.318
, pp. 279-283
-
-
Hohng, S.1
Zhou, R.2
Ha, T.3
-
47
-
-
44449097780
-
Do-it-yourself guide: How to use the modern single-molecule toolkit
-
Walter, N. G., C. Y. Huang, M. A. Sobhy. 2008. Do-it-yourself guide: how to use the modern single-molecule toolkit. Nat. Methods. 5:475-489.
-
(2008)
Nat. Methods.
, vol.5
, pp. 475-489
-
-
Walter, N.G.1
Huang, C.Y.2
Sobhy, M.A.3
|