-
1
-
-
0032506055
-
Phenotypic mechanism of HIV-1 resistance to 3'-azido-3'-deoxythymidine (AZT): increased polymerization processivity and enhanced sensitivity to pyrophosphate of the mutant viral reverse transcriptase'
-
Arion D., Kaushik N. Phenotypic mechanism of HIV-1 resistance to 3'-azido-3'-deoxythymidine (AZT): increased polymerization processivity and enhanced sensitivity to pyrophosphate of the mutant viral reverse transcriptase'. Biochemistry 1998, 37:15908-15917.
-
(1998)
Biochemistry
, vol.37
, pp. 15908-15917
-
-
Arion, D.1
Kaushik, N.2
-
2
-
-
0033014502
-
HIV resistance to zidovudine: the role of pyrophosphorolysis
-
Arion D., Parniak M.A. HIV resistance to zidovudine: the role of pyrophosphorolysis. Drug Resistance Updates 1999, 2:91-95.
-
(1999)
Drug Resistance Updates
, vol.2
, pp. 91-95
-
-
Arion, D.1
Parniak, M.A.2
-
3
-
-
0031879114
-
Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells
-
Arkin A., Ross J. Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells. Genetics 1998, 149:1633-1648.
-
(1998)
Genetics
, vol.149
, pp. 1633-1648
-
-
Arkin, A.1
Ross, J.2
-
4
-
-
0024592935
-
Differential patterns of intracellular metabolism of 2',3'-didehydro-2',3'-dideoxythymidine and 3'-azido-2',3'-dideoxythymidine, 2 potent anti-human immunodeficiency virus compounds
-
Balzarini J., Herdewijn P. Differential patterns of intracellular metabolism of 2',3'-didehydro-2',3'-dideoxythymidine and 3'-azido-2',3'-dideoxythymidine, 2 potent anti-human immunodeficiency virus compounds. J. Biol. Chem. 1989, 264:6127-6133.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 6127-6133
-
-
Balzarini, J.1
Herdewijn, P.2
-
5
-
-
0003880949
-
-
Johns Hopkins Medicine Health Publishing Business Group, Johns Hopkins University Press, Baltimore, MD
-
Bartlett J.G. Medical Management of HIV Infection 2004, Johns Hopkins Medicine Health Publishing Business Group, Johns Hopkins University Press, Baltimore, MD.
-
(2004)
Medical Management of HIV Infection
-
-
Bartlett, J.G.1
-
6
-
-
10744229088
-
Monitoring of didanosine and stavudine intracellular trisphosphorylated anabolite concentrations in HIV-infected patients
-
Becher F., Landman R. Monitoring of didanosine and stavudine intracellular trisphosphorylated anabolite concentrations in HIV-infected patients. AIDS 2004, 18:181-187.
-
(2004)
AIDS
, vol.18
, pp. 181-187
-
-
Becher, F.1
Landman, R.2
-
7
-
-
0042856245
-
A strategy for liquid chromatography/tandem mass spectrometric assays of intracellular drugs: application to the validation of the triphosphorylated anabolite of antiretrovirals in peripheral blood mononuclear cells
-
Becher F., Pruvost A. A strategy for liquid chromatography/tandem mass spectrometric assays of intracellular drugs: application to the validation of the triphosphorylated anabolite of antiretrovirals in peripheral blood mononuclear cells. J. Mass Spectrosc. 2003, 38:879-890.
-
(2003)
J. Mass Spectrosc.
, vol.38
, pp. 879-890
-
-
Becher, F.1
Pruvost, A.2
-
9
-
-
0026506252
-
A 2nd origin of DNA plus-strand synthesis is required for optimal human-immunodeficiency-virus replication
-
Charneau P., Alizon M., Clavel F. A 2nd origin of DNA plus-strand synthesis is required for optimal human-immunodeficiency-virus replication. J. Virol. 1992, 66:2814-2820.
-
(1992)
J. Virol.
, vol.66
, pp. 2814-2820
-
-
Charneau, P.1
Alizon, M.2
Clavel, F.3
-
10
-
-
0029022494
-
Kinetic interaction of the diphosphate of 9-(2-phosphonylmethoxyethyl) adenine and other anti-HIV active purine congeners with HIV reverse transcriptase and human DNA polymerases alpha, beta and gamma
-
Cherrington J.M. Kinetic interaction of the diphosphate of 9-(2-phosphonylmethoxyethyl) adenine and other anti-HIV active purine congeners with HIV reverse transcriptase and human DNA polymerases alpha, beta and gamma. Antiviral Chem. Chemother. 1995, 6:217-221.
-
(1995)
Antiviral Chem. Chemother.
, vol.6
, pp. 217-221
-
-
Cherrington, J.M.1
-
11
-
-
0034792695
-
A direct determination of thymidine triphosphate concentrations without dephosphorylation in peripheral blood mononuclear cells by LC/MS/MS
-
Chi J.D., Jayewardene A. A direct determination of thymidine triphosphate concentrations without dephosphorylation in peripheral blood mononuclear cells by LC/MS/MS. AIDS 2001, 26:829-836.
-
(2001)
AIDS
, vol.26
, pp. 829-836
-
-
Chi, J.D.1
Jayewardene, A.2
-
12
-
-
21244476462
-
Optimal HIV treatment by maximizing immune response
-
Culshaw R.V., et al. Optimal HIV treatment by maximizing immune response. J. Math. Biol. 2004, 48:545-562.
-
(2004)
J. Math. Biol.
, vol.48
, pp. 545-562
-
-
Culshaw, R.V.1
-
13
-
-
0029980114
-
Host-parasite dynamics and outgrowth of virus containing a single K70R amino acid change in reverse transcriptase are responsible for the loss of human immunodeficiency virus type 1 RNA load suppression by zidovudine
-
DeJong M.D., et al. Host-parasite dynamics and outgrowth of virus containing a single K70R amino acid change in reverse transcriptase are responsible for the loss of human immunodeficiency virus type 1 RNA load suppression by zidovudine. PNAS 1996, 93(11):5501-5506.
-
(1996)
PNAS
, vol.93
, Issue.11
, pp. 5501-5506
-
-
DeJong, M.D.1
-
14
-
-
0032864856
-
Relationships between antiviral treatment effects and biphasic viral decay rates in modeling HIV dynamics
-
Ding A.A., Wu H. Relationships between antiviral treatment effects and biphasic viral decay rates in modeling HIV dynamics. Math. Biosci. 1999, 160(1):63-82.
-
(1999)
Math. Biosci.
, vol.160
, Issue.1
, pp. 63-82
-
-
Ding, A.A.1
Wu, H.2
-
15
-
-
0031661729
-
Concentration-controlled zidovudine therapy
-
Fletcher C.V., Acosta E.P. Concentration-controlled zidovudine therapy. Clin. Pharmacol. Ther. 1998, 64:331-338.
-
(1998)
Clin. Pharmacol. Ther.
, vol.64
, pp. 331-338
-
-
Fletcher, C.V.1
Acosta, E.P.2
-
16
-
-
4644235485
-
Broad specificity of human phosphoglycerate kinase for antiviral nucleoside analogs
-
Gallois-Montbrun S., Faraj A. Broad specificity of human phosphoglycerate kinase for antiviral nucleoside analogs. Biochem. Pharm. 2004, 68:1749-1756.
-
(2004)
Biochem. Pharm.
, vol.68
, pp. 1749-1756
-
-
Gallois-Montbrun, S.1
Faraj, A.2
-
17
-
-
0027287973
-
Differential phosphorylation of azidothymidine, dideoxycytidine, and dideoxyinosine in resting and activated peripheral blood mononuclear cells
-
Gao W.Y., Shirasaka T. Differential phosphorylation of azidothymidine, dideoxycytidine, and dideoxyinosine in resting and activated peripheral blood mononuclear cells. J. Clin. Invest. 1993, 91:2326-2333.
-
(1993)
J. Clin. Invest.
, vol.91
, pp. 2326-2333
-
-
Gao, W.Y.1
Shirasaka, T.2
-
18
-
-
0017030517
-
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
-
Gillespie D.T. A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. J. Comput. Phys. 1976, 22:403-434.
-
(1976)
J. Comput. Phys.
, vol.22
, pp. 403-434
-
-
Gillespie, D.T.1
-
19
-
-
0242502660
-
HIV-1 reverse transcription: a brief overview focused on structure-function relationships among molecules involved in initiation of the reaction
-
Gotte M., Li X.G. HIV-1 reverse transcription: a brief overview focused on structure-function relationships among molecules involved in initiation of the reaction. Arch. Biochem. Biophys. 1999, 199-210.
-
(1999)
Arch. Biochem. Biophys.
, pp. 199-210
-
-
Gotte, M.1
Li, X.G.2
-
20
-
-
0029036955
-
The search for synergy-a critical review from a response-surface perspective
-
Greco W.R., Bravo G. The search for synergy-a critical review from a response-surface perspective. Pharmacol. Rev. 1995, 47:331-385.
-
(1995)
Pharmacol. Rev.
, vol.47
, pp. 331-385
-
-
Greco, W.R.1
Bravo, G.2
-
21
-
-
22344455482
-
Intracellular pharmacokinetics of tenofovir diphosphate, carbovir triphosphate, and lamivudine triphosphate in patients receiving triple-nucleoside regimens
-
Hawkins T., Veikley W. Intracellular pharmacokinetics of tenofovir diphosphate, carbovir triphosphate, and lamivudine triphosphate in patients receiving triple-nucleoside regimens. JAIDS 2005, 39:406-411.
-
(2005)
JAIDS
, vol.39
, pp. 406-411
-
-
Hawkins, T.1
Veikley, W.2
-
22
-
-
0027365750
-
Kinetic mechanism of the DNA-dependent DNA-polymerase-activity of human-immunodeficiency-virus reverse transcriptase
-
Hsieh J.C., Zinnen S. Kinetic mechanism of the DNA-dependent DNA-polymerase-activity of human-immunodeficiency-virus reverse transcriptase. J. Biol. Chem. 1993, 268:24607-24613.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 24607-24613
-
-
Hsieh, J.C.1
Zinnen, S.2
-
23
-
-
0037696057
-
Modeling HIV-1 dynamics and antiviral response with consideration of time-varying drug exposure, adherence, and phenotypic sensitivity
-
Huang Y.X., Rosenkranz S.L. Modeling HIV-1 dynamics and antiviral response with consideration of time-varying drug exposure, adherence, and phenotypic sensitivity. Math. Biosci. 2003, 184:165-186.
-
(2003)
Math. Biosci.
, vol.184
, pp. 165-186
-
-
Huang, Y.X.1
Rosenkranz, S.L.2
-
24
-
-
0035966048
-
The emergence of different resistance mechanisms toward nucleoside inhibitors is explained by the properties of the wild type HIV-1 reverse transcriptase
-
Isel C., Ehresmann C. The emergence of different resistance mechanisms toward nucleoside inhibitors is explained by the properties of the wild type HIV-1 reverse transcriptase. J. Biol. Chem. 2001, 276:48725-48732.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 48725-48732
-
-
Isel, C.1
Ehresmann, C.2
-
25
-
-
33645579942
-
Role of mathematical modeling on the optimal control of HIV-1 pathogenesis
-
Joly M., Pinto J.M. Role of mathematical modeling on the optimal control of HIV-1 pathogenesis. AICHE J. 2006, 52:856-884.
-
(2006)
AICHE J.
, vol.52
, pp. 856-884
-
-
Joly, M.1
Pinto, J.M.2
-
26
-
-
11244277325
-
CD4 cell decline with didanosine and tenofovir and failure of triple nucleoside/nucleotide regimens may be related
-
Kakuda T.N., Anderson P.L. CD4 cell decline with didanosine and tenofovir and failure of triple nucleoside/nucleotide regimens may be related. AIDS 2004, 18:2442-2444.
-
(2004)
AIDS
, vol.18
, pp. 2442-2444
-
-
Kakuda, T.N.1
Anderson, P.L.2
-
27
-
-
0027092323
-
Mechanism and fidelity of HIV reverse transcriptase
-
Kati W.M., Johnson K.A. Mechanism and fidelity of HIV reverse transcriptase. J. Biol. Chem. 1992, 267:25988-25997.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 25988-25997
-
-
Kati, W.M.1
Johnson, K.A.2
-
28
-
-
54249129265
-
An extracellular stochastic model of early HIV infection and the formulation of optimal treatment policy
-
Khalili S., Armaou A. An extracellular stochastic model of early HIV infection and the formulation of optimal treatment policy. Chem. Eng. Sci. 2008, 63:4361-4372.
-
(2008)
Chem. Eng. Sci.
, vol.63
, pp. 4361-4372
-
-
Khalili, S.1
Armaou, A.2
-
29
-
-
38149104583
-
Sensitivity analysis of HIV infection response to treatment via stochastic modeling
-
Khalili S., Armaou A. Sensitivity analysis of HIV infection response to treatment via stochastic modeling. Chem. Eng. Sci. 2008, 63:1330-1341.
-
(2008)
Chem. Eng. Sci.
, vol.63
, pp. 1330-1341
-
-
Khalili, S.1
Armaou, A.2
-
30
-
-
0031204179
-
Optimal control of the chemotherapy of HIV
-
Kirschner D., et al. Optimal control of the chemotherapy of HIV. J. Math. Biol. 1997, 35:775-792.
-
(1997)
J. Math. Biol.
, vol.35
, pp. 775-792
-
-
Kirschner, D.1
-
31
-
-
77954762606
-
-
LANL & NIH. HIV sequence database
-
LANL & NIH. HIV sequence database 〈http://www.hiv.lanl.gov/content/sequence/HIV/mainpage.html〉.
-
-
-
-
32
-
-
0032506228
-
Unblocking of chain-terminated primer by HIV-1 reverse transcriptase through a nucleotide-dependent mechanism
-
Meyer P.R., Matsuura S.E. Unblocking of chain-terminated primer by HIV-1 reverse transcriptase through a nucleotide-dependent mechanism. PNAS 1998, 95:13471-13476.
-
(1998)
PNAS
, vol.95
, pp. 13471-13476
-
-
Meyer, P.R.1
Matsuura, S.E.2
-
33
-
-
0033165851
-
A mechanism of AZT resistance: an increase in nucleotide-dependent primer unblocking by mutant HIV-1 reverse transcriptase
-
Meyer P.R., Matsuura S.E. A mechanism of AZT resistance: an increase in nucleotide-dependent primer unblocking by mutant HIV-1 reverse transcriptase. Mol. Cell 1999, 4:35-43.
-
(1999)
Mol. Cell
, vol.4
, pp. 35-43
-
-
Meyer, P.R.1
Matsuura, S.E.2
-
34
-
-
8544267978
-
Effects of primer-template sequence on ATP-dependent removal of chain-terminating nucleotide analogues by HIV-1 reverse transcriptase
-
Meyer P.R., Smith A.J. Effects of primer-template sequence on ATP-dependent removal of chain-terminating nucleotide analogues by HIV-1 reverse transcriptase. J. Biol. Chem. 2004, 279:45389-45398.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 45389-45398
-
-
Meyer, P.R.1
Smith, A.J.2
-
35
-
-
0027976787
-
Restriction and enhancement of human-immunodeficiency-virus type-1 replication by modulation of intracellular deoxynucleoside triphosphate pools
-
Meyerhans A., Vartanian J.P. Restriction and enhancement of human-immunodeficiency-virus type-1 replication by modulation of intracellular deoxynucleoside triphosphate pools. J. Virol. 1994, 68:535-540.
-
(1994)
J. Virol.
, vol.68
, pp. 535-540
-
-
Meyerhans, A.1
Vartanian, J.P.2
-
36
-
-
0031848831
-
Human immunodeficiency virus type 1 reverse transcriptase expressing the K70E mutation exhibits a decrease in specific activity and processivity
-
Miller M.D., Lamy P.D. Human immunodeficiency virus type 1 reverse transcriptase expressing the K70E mutation exhibits a decrease in specific activity and processivity. Mol. Pharm. 1998, 54:291-297.
-
(1998)
Mol. Pharm.
, vol.54
, pp. 291-297
-
-
Miller, M.D.1
Lamy, P.D.2
-
37
-
-
0034852578
-
Tenofovir (PMPA) is less susceptible to pyrophosphorolysis and nucleotide-dependent chain-terminator removal than zidovudine or stavudine
-
Naeger L.K., Margot N.A. Tenofovir (PMPA) is less susceptible to pyrophosphorolysis and nucleotide-dependent chain-terminator removal than zidovudine or stavudine. Nucleosides, Nucleotides Nucleic Acids 2001, 20:635-639.
-
(2001)
Nucleosides, Nucleotides Nucleic Acids
, vol.20
, pp. 635-639
-
-
Naeger, L.K.1
Margot, N.A.2
-
38
-
-
0031581661
-
Anti-viral drug treatment: dynamics of resistance in free virus and infected cell populations
-
Nowak M.A., et al. Anti-viral drug treatment: dynamics of resistance in free virus and infected cell populations. J. Theor. Biol. 1997, 184(2):205-216.
-
(1997)
J. Theor. Biol.
, vol.184
, Issue.2
, pp. 205-216
-
-
Nowak, M.A.1
-
39
-
-
0001918317
-
Mathematical analysis of HIV-1 dynamics in vivo
-
Perelson A.S., Nelson P.W. Mathematical analysis of HIV-1 dynamics in vivo. SIAM Rev. 1999, 41(1):3-44.
-
(1999)
SIAM Rev.
, vol.41
, Issue.1
, pp. 3-44
-
-
Perelson, A.S.1
Nelson, P.W.2
-
40
-
-
20444483684
-
Lack of a metabolic and antiviral drug interaction between tenofovir, abacavir and lamivudine
-
Ray A.S., Myrick F.F. Lack of a metabolic and antiviral drug interaction between tenofovir, abacavir and lamivudine. Antiviral Ther. 2005, 10:451-457.
-
(2005)
Antiviral Ther.
, vol.10
, pp. 451-457
-
-
Ray, A.S.1
Myrick, F.F.2
-
41
-
-
22944451159
-
Accurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactions
-
Salis H., Kaznessis Y. Accurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactions. J. Chem. Phys. 2005, 122:54103-54113.
-
(2005)
J. Chem. Phys.
, vol.122
, pp. 54103-54113
-
-
Salis, H.1
Kaznessis, Y.2
-
42
-
-
2942564337
-
Designing anti-AIDS drugs targeting the major mechanism of HIV-1 RT resistance to nucleoside analog drugs
-
Sarafianos S.G., Hughes S.H. Designing anti-AIDS drugs targeting the major mechanism of HIV-1 RT resistance to nucleoside analog drugs. Int. J. Biochem. Cell Biol. 2004, 36:1706-1715.
-
(2004)
Int. J. Biochem. Cell Biol.
, vol.36
, pp. 1706-1715
-
-
Sarafianos, S.G.1
Hughes, S.H.2
-
43
-
-
0034657706
-
Mutational analysis of Lys(65) of HIV-1 reverse transcriptase
-
Sluis-Cremer N., Arion D. Mutational analysis of Lys(65) of HIV-1 reverse transcriptase. Biochem. J. 2000, 348:77-82.
-
(2000)
Biochem. J.
, vol.348
, pp. 77-82
-
-
Sluis-Cremer, N.1
Arion, D.2
-
44
-
-
0037459923
-
Comparison of three kinetic models of HIV-1 infection: implications for optimization of treatment
-
Snedecor S.J. Comparison of three kinetic models of HIV-1 infection: implications for optimization of treatment. J. Theor. Biol. 2003, 221:519-541.
-
(2003)
J. Theor. Biol.
, vol.221
, pp. 519-541
-
-
Snedecor, S.J.1
-
45
-
-
0031725102
-
Intracellular nucleotides of 2',3'-deoxy-3'-thiacytidine in peripheral blood mononuclear cells of a patient infected with human immunodeficiency virus
-
Solas C.Y., Li F. Intracellular nucleotides of 2',3'-deoxy-3'-thiacytidine in peripheral blood mononuclear cells of a patient infected with human immunodeficiency virus. Antimicrob. Agents Chemother. 1998, 42:2989-2995.
-
(1998)
Antimicrob. Agents Chemother.
, vol.42
, pp. 2989-2995
-
-
Solas, C.Y.1
Li, F.2
-
46
-
-
34247565931
-
Determination of the ex vivo rates of human immunodeficiency virus type 1 reverse transcription by using novel strand-specific amplification analysis
-
Thomas D.C., Voronin Y.A. Determination of the ex vivo rates of human immunodeficiency virus type 1 reverse transcription by using novel strand-specific amplification analysis. J. Virol. 2007, 81:4798-4807.
-
(2007)
J. Virol.
, vol.81
, pp. 4798-4807
-
-
Thomas, D.C.1
Voronin, Y.A.2
-
47
-
-
0034701490
-
Adherence and drug resistance: predictions for therapy outcome
-
Wahl L.M., Nowak M.A. Adherence and drug resistance: predictions for therapy outcome. Proc. R. Soc. London Ser. B Biol. Sci. 2003, 267:835-843.
-
(2003)
Proc. R. Soc. London Ser. B Biol. Sci.
, vol.267
, pp. 835-843
-
-
Wahl, L.M.1
Nowak, M.A.2
-
48
-
-
0036740196
-
Treatment for primary HIV infection: projecting outcomes of immediate, interrupted, or delayed therapy
-
Walensky R., et al. Treatment for primary HIV infection: projecting outcomes of immediate, interrupted, or delayed therapy. JAIDS 2002, 31:27-37.
-
(2002)
JAIDS
, vol.31
, pp. 27-37
-
-
Walensky, R.1
-
49
-
-
14744274896
-
Newly identified host factors modulate HIV replication
-
Zheng Y.H., Lovsin N. Newly identified host factors modulate HIV replication. Immuno. Lett. 2005, 97:225-234.
-
(2005)
Immuno. Lett.
, vol.97
, pp. 225-234
-
-
Zheng, Y.H.1
Lovsin, N.2
-
50
-
-
29244476878
-
A model predictive control based scheduling method for HIV therapy
-
Zurakowski R., Teel A.R. A model predictive control based scheduling method for HIV therapy. J. Theor. Biol. 2006, 238:368-382.
-
(2006)
J. Theor. Biol.
, vol.238
, pp. 368-382
-
-
Zurakowski, R.1
Teel, A.R.2
|