-
1
-
-
34250365377
-
Crystal structure of the T877A human androgen receptor ligand-binding domain complexed to cyproterone acetate provides insight for ligand-induced conformational changes and structure-based drug design
-
Bohl C.E., Wu Z.R., Miller D.D., Bell C.E., Dalton J.T. Crystal structure of the T877A human androgen receptor ligand-binding domain complexed to cyproterone acetate provides insight for ligand-induced conformational changes and structure-based drug design. J. Biol. Chem. 2007, 282:13648-13655.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 13648-13655
-
-
Bohl, C.E.1
Wu, Z.R.2
Miller, D.D.3
Bell, C.E.4
Dalton, J.T.5
-
2
-
-
35648970526
-
Structural characterization of the human androgen receptor ligand-binding domain complexed with EM5744, a rationally designed steroidal ligand bearing a bulky chain directed toward helix 12
-
Cantin L., Faucher F., Couture J.F., de Jesus-Tran K.P., Legrand P., Ciobanu L.C., Frechette Y., Labrecque R., Singh S.M., Labrie F., Breton R. Structural characterization of the human androgen receptor ligand-binding domain complexed with EM5744, a rationally designed steroidal ligand bearing a bulky chain directed toward helix 12. J. Biol. Chem. 2007, 282:30910-30919.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 30910-30919
-
-
Cantin, L.1
Faucher, F.2
Couture, J.F.3
de Jesus-Tran, K.P.4
Legrand, P.5
Ciobanu, L.C.6
Frechette, Y.7
Labrecque, R.8
Singh, S.M.9
Labrie, F.10
Breton, R.11
-
3
-
-
0042121237
-
Multiple sequence alignment with the Clustal series of programs
-
Chenna R., Sugawara H., Koike T., Lopez R., Gibson T.J., Higgins D.G., Thompson J.D. Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res. 2003, 31:3497-3500.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3497-3500
-
-
Chenna, R.1
Sugawara, H.2
Koike, T.3
Lopez, R.4
Gibson, T.J.5
Higgins, D.G.6
Thompson, J.D.7
-
4
-
-
59649127569
-
Homology-modeled ligand-binding domains of medaka estrogen receptors and androgen receptors: a model system for the study of reproduction
-
Cui J.Z., Shen X.Y., Yan Z.W., Zhao H.B., Nagahama Y. Homology-modeled ligand-binding domains of medaka estrogen receptors and androgen receptors: a model system for the study of reproduction. Biochem. Biophys. Res. Commun. 2009, 380:115-121.
-
(2009)
Biochem. Biophys. Res. Commun.
, vol.380
, pp. 115-121
-
-
Cui, J.Z.1
Shen, X.Y.2
Yan, Z.W.3
Zhao, H.B.4
Nagahama, Y.5
-
5
-
-
33646138016
-
Comparison of crystal structures of human androgen receptor ligand-binding domain complexed with various agonists reveals molecular determinants responsible for binding affinity
-
De Jesus-Tran K.P., Cote P.L., Cantin L., Blanchet J., Labrie F., Breton R. Comparison of crystal structures of human androgen receptor ligand-binding domain complexed with various agonists reveals molecular determinants responsible for binding affinity. Protein Sci. 2006, 15:987-999.
-
(2006)
Protein Sci.
, vol.15
, pp. 987-999
-
-
De Jesus-Tran, K.P.1
Cote, P.L.2
Cantin, L.3
Blanchet, J.4
Labrie, F.5
Breton, R.6
-
6
-
-
36249030631
-
Androgen receptor structural and functional elements: role and regulation in prostate cancer
-
Dehm S.M., Tindall D.J. Androgen receptor structural and functional elements: role and regulation in prostate cancer. Mol. Endocrinol. 2007, 21:2855-2863.
-
(2007)
Mol. Endocrinol.
, vol.21
, pp. 2855-2863
-
-
Dehm, S.M.1
Tindall, D.J.2
-
7
-
-
0347383758
-
MODELLER: generation and refinement of homology-based protein structure models
-
Fiser A.S., Sali A. MODELLER: generation and refinement of homology-based protein structure models. Macromol. Crystallogr., Part D 2003, 374:461.
-
(2003)
Macromol. Crystallogr., Part D
, vol.374
, pp. 461
-
-
Fiser, A.S.1
Sali, A.2
-
8
-
-
25444496757
-
Chemistry and structural biology of androgen receptor
-
Gao W.Q., Bohl C.E., Dalton J.T. Chemistry and structural biology of androgen receptor. Chem. Rev. 2005, 105:3352-3370.
-
(2005)
Chem. Rev.
, vol.105
, pp. 3352-3370
-
-
Gao, W.Q.1
Bohl, C.E.2
Dalton, J.T.3
-
9
-
-
43349087708
-
-
Representing structural information with RasMol. Curr. Protoc. Bioinformatics, Unit 5.4 (Chapter 5).
-
Goodsell, D.S., 2005. Representing structural information with RasMol. Curr. Protoc. Bioinformatics, Unit 5.4 (Chapter 5).
-
(2005)
-
-
Goodsell, D.S.1
-
10
-
-
0031473847
-
SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling
-
Guex N., Peitsch M.C. SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 1997, 18:2714-2723.
-
(1997)
Electrophoresis
, vol.18
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
11
-
-
52049120609
-
Molecular docking of intercalators and groove-binders to nucleic acids using Autodock and Surflex
-
Holt P.A., Chaires J.B., Trent J.O. Molecular docking of intercalators and groove-binders to nucleic acids using Autodock and Surflex. J. Chem. Inf. Model. 2008, 48:1602-1615.
-
(2008)
J. Chem. Inf. Model.
, vol.48
, pp. 1602-1615
-
-
Holt, P.A.1
Chaires, J.B.2
Trent, J.O.3
-
12
-
-
34848900737
-
Identification and characterisation of an androgen receptor from zebrafish Danio rerio
-
Jorgensen A., Andersen O., Bjerregaard P., Rasmussen L.J. Identification and characterisation of an androgen receptor from zebrafish Danio rerio. Comp. Biochem. Physiol. C 2007, 146:561-568.
-
(2007)
Comp. Biochem. Physiol. C
, vol.146
, pp. 561-568
-
-
Jorgensen, A.1
Andersen, O.2
Bjerregaard, P.3
Rasmussen, L.J.4
-
13
-
-
40649114184
-
Plastic components affect the activation of the aryl hydrocarbon and the androgen receptor
-
Kruger T., Long M., Bonefeld-Jorgensen E.C. Plastic components affect the activation of the aryl hydrocarbon and the androgen receptor. Toxicology 2008, 246:112-123.
-
(2008)
Toxicology
, vol.246
, pp. 112-123
-
-
Kruger, T.1
Long, M.2
Bonefeld-Jorgensen, E.C.3
-
14
-
-
0000243829
-
Procheck - a program to check the stereochemical quality of protein structures
-
Laskowski R.A., Macarthur M.W., Moss D.S., Thornton J.M. Procheck - a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 1993, 26:283-291.
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
Macarthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
15
-
-
41149134297
-
Probing ligand binding modes of human cytochrome P450 2J2 by homology modeling, molecular dynamics simulation, and flexible molecular docking
-
Li W.H., Tang Y., Liu H., Cheng J.G., Zhu W.L., Jiang H.L. Probing ligand binding modes of human cytochrome P450 2J2 by homology modeling, molecular dynamics simulation, and flexible molecular docking. Proteins 2008, 71:938-949.
-
(2008)
Proteins
, vol.71
, pp. 938-949
-
-
Li, W.H.1
Tang, Y.2
Liu, H.3
Cheng, J.G.4
Zhu, W.L.5
Jiang, H.L.6
-
16
-
-
0035789518
-
GROMACS 3.0: a package for molecular simulation and trajectory analysis
-
Lindahl E., Hess B., van der Spoel D. GROMACS 3.0: a package for molecular simulation and trajectory analysis. J. Mol. Model. 2001, 7:306-317.
-
(2001)
J. Mol. Model.
, vol.7
, pp. 306-317
-
-
Lindahl, E.1
Hess, B.2
van der Spoel, D.3
-
17
-
-
43349100053
-
Homology modeling of hemagglutinin/protease [HA/P (vibriolysin)] from Vibrio cholerae: sequence comparison, residue interactions and molecular mechanism
-
Lutfullah G., Amin F., Khan Z., Azhar N., Azim M.K., Noor S., Shoukat K. Homology modeling of hemagglutinin/protease [HA/P (vibriolysin)] from Vibrio cholerae: sequence comparison, residue interactions and molecular mechanism. Protein J. 2008, 27:105-114.
-
(2008)
Protein J.
, vol.27
, pp. 105-114
-
-
Lutfullah, G.1
Amin, F.2
Khan, Z.3
Azhar, N.4
Azim, M.K.5
Noor, S.6
Shoukat, K.7
-
18
-
-
0035942522
-
Homology modeling using multiple molecular dynamics simulations and docking studies of the human androgen receptor ligand binding domain bound to testosterone and nonsteroidal ligands
-
Marhefka C.A., Moore B.M., Bishop T.C., Kirkovsky L., Mukherjee A., Dalton J.T., Miller D.D. Homology modeling using multiple molecular dynamics simulations and docking studies of the human androgen receptor ligand binding domain bound to testosterone and nonsteroidal ligands. J. Med. Chem. 2001, 44:1729-1740.
-
(2001)
J. Med. Chem.
, vol.44
, pp. 1729-1740
-
-
Marhefka, C.A.1
Moore, B.M.2
Bishop, T.C.3
Kirkovsky, L.4
Mukherjee, A.5
Dalton, J.T.6
Miller, D.D.7
-
19
-
-
33846337559
-
Structural and functional characterization of the aryl hydrocarbon receptor ligand binding domain by homology modeling and mutational analysis
-
Pandini A., Denison M.S., Song Y.J., Soshilov A.A., Bonati L. Structural and functional characterization of the aryl hydrocarbon receptor ligand binding domain by homology modeling and mutational analysis. Biochemistry (Mosc.) 2007, 46:696-708.
-
(2007)
Biochemistry (Mosc.)
, vol.46
, pp. 696-708
-
-
Pandini, A.1
Denison, M.S.2
Song, Y.J.3
Soshilov, A.A.4
Bonati, L.5
-
20
-
-
0028871814
-
Evaluation of comparative protein modeling by MODELER
-
Sali A., Potterton L., Yuan F., Vanvlijmen H., Karplus M. Evaluation of comparative protein modeling by MODELER. Proteins 1995, 23:318-326.
-
(1995)
Proteins
, vol.23
, pp. 318-326
-
-
Sali, A.1
Potterton, L.2
Yuan, F.3
Vanvlijmen, H.4
Karplus, M.5
-
21
-
-
13944264638
-
Three-dimensional structure-activity relationships of nonsteroidal ligands in complex with androgen receptor ligand-binding domain
-
Soderholm A.A., Lehtovuori P.T., Nyronen T.H. Three-dimensional structure-activity relationships of nonsteroidal ligands in complex with androgen receptor ligand-binding domain. J. Med. Chem. 2005, 48:917-925.
-
(2005)
J. Med. Chem.
, vol.48
, pp. 917-925
-
-
Soderholm, A.A.1
Lehtovuori, P.T.2
Nyronen, T.H.3
-
22
-
-
54249141064
-
Computationally identified novel diphenyl- and phenylpyridine androgen receptor antagonist structures
-
Soderholm A.A., Viiliainen J., Lehtovuori P.T., Eskelinen H., Roell D., Baniahmad A., Nyronen T.H. Computationally identified novel diphenyl- and phenylpyridine androgen receptor antagonist structures. J. Chem. Inf. Model. 2008, 48:1882-1890.
-
(2008)
J. Chem. Inf. Model.
, vol.48
, pp. 1882-1890
-
-
Soderholm, A.A.1
Viiliainen, J.2
Lehtovuori, P.T.3
Eskelinen, H.4
Roell, D.5
Baniahmad, A.6
Nyronen, T.H.7
-
23
-
-
33748763282
-
Structural basis for androgen receptor agonists and antagonists: interaction of SPEED 98-listed chemicals and related compounds with the androgen receptor based on an in vitro reporter gene assay and 3D-QSAR
-
Tamura H., Ishimoto Y., Fujikawa T., Aoyama H., Yoshikawa H., Akamatsu M. Structural basis for androgen receptor agonists and antagonists: interaction of SPEED 98-listed chemicals and related compounds with the androgen receptor based on an in vitro reporter gene assay and 3D-QSAR. Bioorg. Med. Chem. 2006, 14:7160-7174.
-
(2006)
Bioorg. Med. Chem.
, vol.14
, pp. 7160-7174
-
-
Tamura, H.1
Ishimoto, Y.2
Fujikawa, T.3
Aoyama, H.4
Yoshikawa, H.5
Akamatsu, M.6
-
24
-
-
34547781750
-
MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0.
-
Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
25
-
-
0032202527
-
Reference architecture for holonic manufacturing systems: PROSA
-
Van Brussel H., Wyns J., Valckenaers P., Bongaerts L., Peeters P. Reference architecture for holonic manufacturing systems: PROSA. Comput. Ind. 1998, 37:255-274.
-
(1998)
Comput. Ind.
, vol.37
, pp. 255-274
-
-
Van Brussel, H.1
Wyns, J.2
Valckenaers, P.3
Bongaerts, L.4
Peeters, P.5
-
26
-
-
0033895206
-
Differential binding of endogenous steroids and chemicals to androgen receptors in rainbow trout and goldfish
-
Wells K., Van Der Kraak G. Differential binding of endogenous steroids and chemicals to androgen receptors in rainbow trout and goldfish. Environ. Toxicol. Chem. 2000, 19:2059-2065.
-
(2000)
Environ. Toxicol. Chem.
, vol.19
, pp. 2059-2065
-
-
Wells, K.1
Van Der Kraak, G.2
-
27
-
-
34548515097
-
Competitive binding comparison of endocrine-disrupting compounds to recombinant androgen receptor from fathead minnow, rainbow trout, and human
-
Wilson V.S., Cardon M.C., Gray L.E., Hartig P.C. Competitive binding comparison of endocrine-disrupting compounds to recombinant androgen receptor from fathead minnow, rainbow trout, and human. Environ. Toxicol. Chem. 2007, 26:1793-1802.
-
(2007)
Environ. Toxicol. Chem.
, vol.26
, pp. 1793-1802
-
-
Wilson, V.S.1
Cardon, M.C.2
Gray, L.E.3
Hartig, P.C.4
-
28
-
-
70449519407
-
In silico predication of nuclear hormone receptors for organic pollutants by homology modeling and molecular docking
-
Wu B., Zhang Y., Kong J., Zhang X., Cheng S. In silico predication of nuclear hormone receptors for organic pollutants by homology modeling and molecular docking. Toxicol. Lett. 2009, 191:69-73.
-
(2009)
Toxicol. Lett.
, vol.191
, pp. 69-73
-
-
Wu, B.1
Zhang, Y.2
Kong, J.3
Zhang, X.4
Cheng, S.5
|