Moving beyond static species distribution models in support of conservation biogeography

Diversity and Distributions

Volumn 16, Issue 3, 2010, Pages 321-330

  Franklin, Janet ^a  

^a ARIZONA STATE UNIVERSITY   (United States)

Author keywords

Climate change; Disturbance; Landscape dynamics; Metapopulation model; Species distribution model; Species migration

Indexed keywords

CONSERVATION PLANNING; ENVIRONMENTAL EFFECT; LAND COVER; LANDSCAPE CHANGE; LANDSCAPE ECOLOGY; METAPOPULATION; MIGRATION; POPULATION DISTRIBUTION; POPULATION DYNAMICS; POPULATION MODELING; POPULATION VIABILITY ANALYSIS; SPECIES CONSERVATION; SPECIES-AREA RELATIONSHIP; SUCCESSION;

EID: 77953167567     PISSN: 13669516     EISSN: 14724642     Source Type: Journal    
DOI: 10.1111/j.1472-4642.2010.00641.x     Document Type: Review

References (101)

1. Akcakaya HR. Linking population-level risk assessment with landscape and habitat models. Science of the Total Environment 2001, 274:283-291.
2. Akçakaya HR. Viability analyses with habitat-based metapopulation models. Population Ecology 2000, 42:45-53.
3. Akçakaya HR. RAMAS GIS: linking landscape data with population viability analysis. 2002, Applied Biomathematics, Setauket, NY
4. Akçakaya HR, Atwood JL. A habitat based metapopulation model of the California gnatcatcher. Conservation Biology 1997, 11:422-434.
5. Akçakaya HR, Burgman M. PVA in theory and practice. Conservation Biology 1995, 9:705-707.
6. Akçakaya RH, Regan HM. Population models: individual-based. Ecological modeling in risk assessment: chemical effects on populations, ecosystems and landscapes 2002, 83-95. Pastorok RA, Bartell SMFerson SGinzburg LR. ed. by, pp, Lewis Publishers, Boca Raton FL
7. Akçakaya HR, Radeloff VC, Mlandenoff DJ, He HS. Integrating landscape and metapopulation modeling approaches: Viability of the sharp-tailed grouse in a dynamic landscape. Conservation Biology 2004, 18:526-537.
8. Akçakaya HR, Franklin J, Syphard AD, Stephenson JR. Viability of Bell's Sage Sparrow (Amphispiza belli ssp. belli) under altered fire regimes. Ecological Applications 2005, 15:521-531.
9. Akçakaya HR, Butchart SHM, Mace GM, Stuart SN, Hilton-Taylor C. Use and misuse of the IUCN Red List Criteria in projecting climate change impacts on biodiversity. Global Change Biology 2006, 12:2037-2043.
10. Anderson BJ, Akcakaya HR, Araújo MB, Fordham DA, Martinez-Meyer E, Thuiller W, Brook BW. Dynamics of range margins for metapopulations under climate change. Proceedings of the Royal Society B: Biological Sciences 2009, 276:1415-1420.
11. Araújo MB, Guisan A. Five (or so) challenges for species distribution modelling. Journal of Biogeography 2006, 33:1677-1688.
12. Araújo MB, Pearson RG, Thuiller W, Erhard M. Validation of species-climate impact models under climate change. Global Change Biology 2005, 11:1504-1513.
13. Araújo MB, Thuiller W, Pearson RG. Climate warming and the decline of amphibians and reptiles in Europe. Journal of Biogeography 2006, 33:1712-1728.
14. Austin MP. Modelling the environmental niche of plants: some implications for plant community response to elevation CO2 levels. Australian Journal of Botany 1992, 40:615-630.
15. Beissinger SR, McCullough DR. Population viability analysis 2002, University of Chicago Press, Chicago
16. Bomhard B, Richardson DM, Donaldson JS, Hughes GO, Midgley GF, Raimondo T, Rebelo AG, Rouget M, Thuiller W. Potential impacts of future land use and climate change on the Red List status of the Proteaceae in the Cape Floristic Region, South Africa. Global Change Biology 2005, 11:1452-1468.
17. Botkin DB, Saxe H, Araújo MB, Betts R, Bradshaw RHW, Cedhagen T, Chesson P, Dawson TP, Etterson JR, Faith DP, Ferrier S, Guisan A, Hansen AS, Hilbert DW, Loehle C, Margules C, New M, Sobel MJ, Stockwell DRB. Forecasting the effects of global warming on biodiversity. BioScience 2007, 57:227-236.
18. Brigham CA, Thomson DM. Approaches to modeling population viability in plants: an overview. Population Viability in Plants: Conservation, Management, and Modeling of Rare Plants 2003, 145-171. Brigham CA, Schwartz MW. ed. by, pp, Springer-Verlag, Berlin
19. Brook BW, Akçakaya RH, Keith DA, Mace GM, Pearson RG, Araújo MB. Integrating bioclimate with population models to improve forecasts of species extinctions under climate change. Biology Letters 2009, 5:723-724.
20. Carey PD. DISPERSE: a cellular automaton for predicting the distribution of species in changed climates. Global Ecology and Biogeography Letters 1996, 5:217-226.
21. Carmel Y, Flather CH. Constrained range expansion and climate change assessments. Frontiers in Ecology and the Environment 2006, 4:178-179.
22. Carroll C. Interacting effects of climate change, landscape conversion, and harvest on carnivore populations at the range margin: Marten and Lynx in the northern Appalachians. Conservation Biology 2007, 21:1092-1104.
23. Cayan DR, Maurer EP, Dettinger MD, Tyree M, Hayhoe K. Climate change scenarios for the California region. Climatic Change 2008, 87:S21-S42.
24. Clark JS. Why trees migrate so fast: confronting theory with dispersal biology and the paleorecord. American Naturalist 1998, 152:204-224.
25. Dullinger S, Dirnböck T, Grabherr G. Modelling climate change-driven treeline shifts: relative effects of temperature increase, dispersal and invasibility. The Journal of Ecology 2004, 92:241-252.
26. Elith J, Leathwick J. Conservation prioritisation using species distribution modelling. Spatial conservation prioritization: quantitative methods and computational tools 2009, 70-93. Moilanen A, Wilson KAPossingham H. ed. by, pp, Oxford University Press, Oxford, UK
27. Elith J, Graham CH, Anderson RP. Novel methods improve prediction of species' distributions from occurrence data. Ecography 2006, 29:129-151.
28. Engler R, Guisan A. MigClim: predicting plant distribution and dispersal in a changing climate. Diversity and Distributions 2009, 15:590-601.
29. Fitzpatrick MC, Gove AD, Sanders NJ, Dunn RR. Climate change, plant migration, and range collapse in a global biodiversity hotspot: the Banksia (Proteaceae) of Western Australia. Global Change Biology 2008, 14:1337-1352.
30. Franklin J. Predictive vegetation mapping: geographic modelling of biospatial patterns in relation to environmental gradients. Progress in Physical Geography 1995, 19:474-499.
31. Franklin J. Enhancing a regional vegetation map with predictive models of dominant plant species in chaparral. Applied Vegetation Science 2002, 5:135-146.
32. Franklin J. Mapping species distributions: spatial inference and prediction 2009, Cambridge University Press, Cambridge, UK
33. Franklin J, Syphard AD, He HS, Mladenoff DJ. The effects of altered fire regimes on patterns of plant succession in the foothills and mountains of southern California. Ecosystems 2005, 8:885-898.
34. Goodchild MF. Geographical data modeling. Computers & Geosciences 1992, 18:401-408.
35. Goodchild MF. Integrating GIS and remote sensing for vegetation analysis and modeling: methodological issues. Journal of Vegetation Science 1994, 5:615-626.
36. Guisan A, Thuiller W. Predicting species distributions: offering more than simple habitat models. Ecology Letters 2005, 8:993-1009.
37. Guisan A, Zimmermann NE. Predictive habitat distribution models in ecology. Ecological Modelling 2000, 135:147-186.
38. Guisan A, Lehmann A, Ferrier S, Austin M, Overton JMC, Aspinall R, Hastie T. Making better biogeographical predictions of species' distributions. The Journal of Applied Ecology 2006, 43:386-392.
39. Gustafson EJ, Zollner PA, Sturtevant BR, He HS, Mladenoff DJ. Influence of forest management alternatives and land type on susceptibility to fire in northern Wisconsin, USA. Landscape Ecology 2004, 19:327-341.
40. Hanski I. A practical model of metapopulation dynamics. Journal of Animal Ecology 1994, 63:151-162.
41. He HS, Mladenoff DJ. Spatially explicit and stochastic simulation of forest-landscape fire disturbance and succession. Ecology 1999, 80:81-90.
42. He HS, Mladenoff DJ, Radeloff VC, Crow TR. Integration of GIS data and classified satellite imagery for regional forest assessment. Ecological Applications 1998, 8:1072-1083.
43. Heikkinen RK, Luoto M, Araújo MB, Virkkala R, Thuiller W, Sykes MT. Methods and uncertainties in bioclimatic envelope modelling under climate change. Progress in Physical Geography 2006, 30:751-777.
44. Henle K, Lindenmayer DB, Margules CR, Saunders DA, Wissel C. Species survival in fragmented landscapes: where are we now? Biodiversity and Conservation 2004, 13:1-8.
45. Higgins SI, Richardson DM. A review of models of alien plant spread. Ecological Modelling 1996, 87:249-265.
46. Higgins SI, Clark JS, Nathan R, Hovestadt T, Schurr F, Fragoso JMV, Aguiar MR, Ribbens E, Lavorel S. Forecasting plant migration rates: managing uncertainty for risk assessment. The Journal of Ecology 2003, 91:341-347.
47. Iverson LR, Schwartz MW, Prasad AM. How fast and far might tree species migrate in the eastern United States due to climate change? Global Ecology and Biogeography 2004a, 13:209-219.
48. Iverson LR, Schwartz MW, Prasad AM. Potential colonization of newly available tree-species habitat under climate change: an analysis for five eastern US species. Landscape Ecology 2004b, 19:787-799.
49. Keith DA, Akçakaya HR, Thuiller W, Midgley GF, Pearson RG, Phillips SJ, Regan HM, Araújo MB, Rebelo TG. Predicting extinction risks under climate change: coupling stochastic population models with dynamic bioclimatic habitat models. Biology Letters 2008, 4:560-563.
50. Kindvall O, Bergman K-O. Woodland brown butterfly (Lopinga achine) in Sweden: viability in a dynamic landscape maintained by grazing. Species conservation and management: case studies 2004, 171-178. Akcakaya R, Burgman MAKindvall OWood CCSjogren-Gulve PHatfield JSMcCarthy MA. ed. by, pp, Oxford University Press, New York
51. Kueppers LM, Snyder MA, Sloan LC, Zavaleta ES, Fulfrost B. Modeled regional climate change and California endemic oak ranges. Proceedings of the National Academy of Sciences USA 2005, 102:16281-16286.
52. Kueppers LM, Zavaleta E, Fulfrost B, Snyder MA, Sloan LC. Constrained range expansion and climate change assessments - The authors reply. Frontiers in Ecology and the Environment 2006, 4:179-179.
53. Larson MA, Thompson FR, Millspaugh JJ, Dijak WD, Shifley SR. Linking population viability, habitat suitability, and landscape simulation models for conservation planning. Ecological Modelling 2004, 180:103-118.
54. Lawler JJ, Shafer SL, White D, Kareiva P, Maurer EP, Blaustein AR, Bartlein PJ. Projected climate-induced faunal changes in the Western Hemisphere. Ecology 2009, 90:588-597.
55. Lawson DM, Regan HM, Zedler PH, Franklin J. Cumulative effects of land use, altered fire regime and climate change on persistence of Ceanothus verrucosus, a rare, fire dependent plant species. Global Change Biology 2009, http://dx.doi.org/10.1111/j.1365-2486.2009.02143.x, doi:
56. Lindenmayer DB, Possingham HP. Modelling the inter-relationships between habitat patchiness, dispersal capability and metapopulation persistence of the endangered species, Leadbeater's possum, in south-eastern Australia. Landscape Ecology 1996, 11:79-105.
57. Lozier JD, Aniello P, Hickerson MJ. Predicting the distribution of Sasquatch in western North America: anything goes with ecological niche modelling. Journal of Biogeography 2009, 36:1623-1627.
58. McPherson JM, Jetz W, Rogers DJ. The effects of species' range sizes on the accuracy of distribution models: ecological phenomenon or statistical artefact? The Journal of Applied Ecology 2004, 41:811-823.
59. McRae BH, Schumaker NH, McKane RB, Busing RT, Solomon AM, Burdick CA. A multi-model framework for simulating wildlife population response to land-use and climate change. Ecological Modelling 2008, 219:77-91.
60. Meentemeyer RK, Anacker BL, Mark W, Rizzo DM. Early detection of emerging forest disease using dispersal estimation and ecological niche modeling. Ecological Applications 2008, 18:377-390.
61. Melbourne BA, Davies KF, Margules CR, Lindenmayer DB, Saunders DA, Wissel C, Henle K. Species survival in fragmented landscapes: where to from here? Biodiversity and Conservation 2004, 13:275-284.
62. Midgley GF, Hughes GO, Thuiller W, Rebelo AG. Migration rate limitations on climate change-induced range shifts in Cape Proteaceae. Diversity and Distributions 2006, 12:555-562.
63. Midgley GF, Davies ID, Albert CH, Altwegg R, Hannah L, Hughes GO, Ries LP, Thuiller W. BioMove - an integrated platform simulating the dynamic response of species to environmental change (Software Report). Ecography doi: 10.1111/j.1600-0587.2009.06000.x
64. Mladenoff DJ, Baker WL. Development of forest and landscape modeling approaches. Spatial modeling of forest landscape change: approaches and applications 1999, 1-13. Mladenoff DJ, Baker WL. ed. by, pp, Cambridge University Press, Cambridge
65. Ohmann JL, Gregory MJ. Predictive mapping of forest composition and structure with direct gradient analysis and nearest neighbor imputation in coastal Oregon, U.S.A. Canadian Journal of Forest Research 2002, 32:725-741.
66. Ostendorf B, Hilbert DW, Hopkins MS. The effect of climate change on tropical rainforest vegetation patterns. Ecological Modelling 2001, 145:211-224.
67. Parmesan C. Ecological and evolutionary responses to recent climate change. Annual Review of Ecology Evolution and Systematics 2006, 37:637-669.
68. Pearson RG, Dawson TP, Liu C. Modelling species distribution in Britain: a hierarchical integration of climate and land cover. Ecography 2004, 27:285-298.
69. Pearson RG, Thuiller W, Araújo MB, Martinez-Meyer E, Brotons L, McClean C, Miles L, Segurado P, Dawson TP, Lees DC. Model-based uncertainty in species range prediction. Journal of Biogeography 2006, 33:1704-1711.
70. Peterson AT. Predicting the geography of species' invasions via ecological niche modeling. Quarterly Review of Biology 2003, 78:419-433.
71. Phillips SJ, Dudík M. Modeling of species distributions with Maxent: new extensions and a comprehensive evaluation. Ecography 2008, 31:161-175.
72. Pitelka LF, Gardiner RH, Ash J. Plant migration and climate change. American Scientist 1997, 85:464-473.
73. Possingham HP, Lindenmayer DB, McCarthy MA. Population viability analysis. Encyclopedia of biodiversity 2001, 4:831-843.
74. Pulliam HR, Dunning JB, Liu J. Population dynamics in complex landscapes: a case study. Ecological Applications 1992, 2:165-177.
75. Randin CF, Dirnbock T, Dullinger S, Zimmermann NE, Zappa M, Guisan A. Are niche-based species distribution models transferable in space? Journal of Biogeography 2006, 33:1689-1703.
76. Regan HM, Crookston JB, Swab R, Franklin J, Lawson DM. Habitat fragmentation and altered fire regime create trade-offs for an obligate seeding shrub. Ecology 2010, 91:267-276.
77. Richardson DM, Thuiller W. Home away from home - objective mapping of high-risk source areas for plant introductions. Diversity and Distributions 2007, 13:299-312.
78. Richardson DM, Whittaker RJ. Conservation biogeography - foundations, concepts and challenges. Diversity and Distributions 2010, 16:313-320.
79. Root TL, Price JT, Hall KR, Schneider SH, Rosenzweig C, Pounds JA. Fingerprints of global warming on wild animals and plants. Nature 2003, 421:57-60.
80. Scheller RM, Mladenoff DJ, Thomas RC, Sickley TA. Simulating the effects of fire reintroduction versus continued fire absence on forest composition and landscape structure in the Boundary Waters Canoe Area, northern Minnesota, USA. Ecosystems 2005, 8:396-411.
81. Scheller RM, Van Tuyl S, Clark K, Hayden NG, Hom J, Mladenoff DJ. Simulation of forest change in the New Jersey Pine Barrens under current and pre-colonial conditions. Forest Ecology and Management 2008, 255:1489-1500.
82. Schumaker NH. A user's guide to the PATCH model 1998, US Environmental Protection Agency, Environmental Research Laboratory, Corvalis, OR
83. Scott JM, Heglund PJ, Morrison ML, Haufler JB, Raphael MG, Wall WA, Samson FB. Predicting species occurrences: issues of accuracy and scale 2002, Island Press, Covelo, CA
84. Segurado P, Araújo MB. An evaluation of methods for modelling species distributions. Journal of Biogeography 2004, 31:1555-1568.
85. Syphard AD, Franklin J, Keeley JE. Simulating the effects of frequent fire on southern California coastal shrublands. Ecological Applications 2006, 16:1744-1756.
86. Syphard AD, Clarke KC, Franklin J. Simulating fire frequency and urban growth in southern California coastal shrublands, USA. Landscape Ecology 2007, 22:431-445.
87. Thomas CD, Cameron A, Green RE, Bakkenes M, Beaumont LJ, Collingham YC, Erasmus BFN, de Siqueira MF, Hannah L, Hughes L, Huntley B, van Jaarsveld AS, Midgley GF, Miles L, Ortega-Huerta MA, Peterson AT, Phillips OL, Williams SE. Extinction risk from climate change. Nature 2004, 427:145-148.
88. Thuiller W, Araújo MB, Pearson RG, Whittaker RJ, Brotons L, Lavorel S. Biodiversity conservation - Uncertainty in predictions of extinction risk. Nature 2004a, 430. http://dx.doi.org/10.1038/nature02716, doi:
89. Thuiller W, Brotons L, Araújo MB, Lavorel S. Effects of restricting environmental range of data to project current and future species distributions. Ecography 2004b, 27:165-172.
90. Thuiller W, Lavorel S, Araújo MB, Sykes MT, Prentice IC. Climate change threats to plant diversity in Europe. Proceedings of the National Academy of Sciences USA 2005, 102:8245-8250.
91. Thuiller W, Lavorel S, Sykes MT, Araújo MB. Using niche-based modelling to assess the impact of climate change on tree functional diversity in Europe. Diversity and Distributions 2006, 12:49-60.
92. Thuiller W, Albert C, Araújo MB, Berry PM, Cabeza M, Guisan A, Hickler T, Midgley GF, Paterson J, Schurr FM, Sykes MT, Zimmermann NE. Predicting global change impacts on plant species' distributions: future challenges. Perspectives in Plant Ecology Evolution and Systematics 2008, 9:137-152.
93. Travis JMJ. Climate change and habitat destruction: a deadly anthropogenic cocktail. Proceedings of the Royal Society of London Series B-Biological Sciences 2003, 270:467-473.
94. Whittaker RJ, Araújo MB, Jepson P, Ladle RJ, Watson JEM, Willis KJ. Conservation biogeography: assessment and prospect. Diversity and Distributions 2005, 11:3-23.
95. van Wilgen NJ, Roura-Pascual N, Richardson DM. A quantitative climate-match score for risk-assessment screening of reptile and amphibian introductions. Environmental Management 2009, 44:590-607.
96. Williams JW, Jackson ST. Novel climates, no-analog communities, and ecological surprises. Frontiers in Ecology and the Environment 2007, 5:475-482.
97. Williams NSG, Hahs AK, Morgan JW. A dispersal-constrained habitat suitability model for predicting invasion of alpine vegetation. Ecological Applications 2008, 18:347-359.
98. Wilson RJ, Davies ZG, Thomas CD. Modelling the effect of habitat fragmentation on range expansion in a butterfly. Proceedings of the Royal Society B: Biological Sciences 2009, 276:1421-1427.
99. Wintle BA, Elith J, Potts JM. Fauna habitat modelling and mapping: a review and case study in the Lower Hunter Central Coast region of NSW. Austral Ecology 2005, 30:719-738.
100. Xu CG, Gertner GZ, Scheller RM. Potential effects of interaction between CO2 and temperature on forest landscape response to global warming. Global Change Biology 2007, 13:1469-1483.
101. Zurrell D, Jeltsch F, Dormann CF, Schroder B. Static species distribution models in dynamically changing systems: how good can predictions really be? Ecography 2009, 32:733-744.