A strategy for analyzing gene-nutrient interactions in type 2 diabetes

Journal of Diabetes Science and Technology

Volumn 3, Issue 4, 2009, Pages 710-721

  Wise, Carolyn ^a   Kaput, Jim ^a  

^a NATIONAL CENTER FOR TOXICOLOGICAL RESEARCH   (United States)

Author keywords

Gene nutrient interactions; Metacore; Micronutrients; Obesity; Quantitative trait loci; Type 2 diabetes

Indexed keywords

ADULT; ARTICLE; DIET; FOOD DRUG INTERACTION; GENETIC PREDISPOSITION; GENETICS; HUMAN; METABOLIC SYNDROME X; METABOLISM; METHODOLOGY; NON INSULIN DEPENDENT DIABETES MELLITUS; NUTRIGENOMICS;

ADULT; DIABETES MELLITUS, TYPE 2; DIET; FOOD-DRUG INTERACTIONS; GENETIC PREDISPOSITION TO DISEASE; HUMANS; METABOLIC SYNDROME X; NUTRIGENOMICS; RESEARCH DESIGN;

EID: 77953043755     PISSN: None     EISSN: 19322968     Source Type: Journal    
DOI: 10.1177/193229680900300416     Document Type: Conference Paper

References (57)

1. Koopman RJ, Mainous AG 3rd, Diaz VA, Geesey ME. Changes in age at diagnosis of type 2 diabetes mellitus in the United States, 1988 to 2000. Ann Fam Med. 2005;3(1): 60-3. (Pubitemid 40203949)
2. SEARCH for Diabetes in Youth Study Group, Liese AD, D'Agostino RB Jr, Hamman RF, Kilgo PD, Lawrence JM, Liu LL, Loots B, Linder B, Marcovina S, Rodriguez B, Standiford D, Williams DE. The burden of diabetes mellitus among US youth: prevalence estimates from the SEARCH for Diabetes in Youth Study. Pediatrics. 2006;118(4):1510-8.
3. Bell RA, Mayer-Davis EJ, Beyer JW, D'Agostino RB Jr, Lawrence JM, Linder B, Liu LL, Marcovina SM, Rodriguez BL, Williams D, Dabelea D; SEARCH for Diabetes in Youth Study Group. Diabetes in non-Hispanic white youth: prevalence, incidence, and clinical characteristics: the SEARCH for Diabetes in Youth Study. Diabetes Care. 2009:32 Suppl 2:S102-11.
4. Dabelea D, DeGroat J, Sorrelman C, Glass M, Percy CA, Avery C, Hu D, D'Agostino RB Jr, Beyer J, Imperatore G, Testaverde L, Klingensmith G, Hamman RF; SEARCH for Diabetes in Youth Study Group. Diabetes in Navajo youth: prevalence, incidence, and clinical characteristics: the SEARCH for Diabetes in Youth Study. Diabetes Care. 2009;32 Suppl 2:S141-7.
5. Guy J, Ogden L, Wadwa RP, Hamman RF, Mayer-Davis EJ, Liese AD, D'Agostino R Jr, Marcovina S, Dabelea D. Lipid and lipoprotein profiles in youth with and without type 1 diabetes: the SEARCH for Diabetes in Youth case-control study. Diabetes Care. 2009;32(3): 416-20.
6. Lawrence JM, Mayer-Davis EJ, Reynolds K, Beyer J, Pettitt DJ, D'Agostino RB Jr, Marcovina SM, Imperatore G, Hamman RF. Diabetes in Hispanic American youth: prevalence, incidence, demographics, and clinical characteristics: the SEARCH for Diabetes in Youth Study. Diabetes Care. 2009;32 Suppl 2:S123-32.
7. Liu LL, Yi JP, Beyer J, Mayer-Davis EJ, Dolan LM, Dabelea DM, Lawrence JM, Rodriguez BL, Marcovina SM, Waitzfelder BE, Fujimoto WY; SEARCH for Diabetes in Youth Study Group. Type 1 and Type 2 diabetes in Asian and Pacific Islander U.S. youth: the SEARCH for Diabetes in Youth Study. Diabetes Care. 2009;32 Suppl 2:S133-40.
8. Mayer-Davis EJ, Bell RA, Dabelea D, D'Agostino R Jr, Imperatore G, Lawrence JM, Liu L, Marcovina S; SEARCH for Diabetes in Youth Study Group.The many faces of diabetes in American youth: type 1 and type 2 diabetes in five race and ethnic populations: the SEARCH for Diabetes in Youth Study. Diabetes Care. 2009;32 Suppl 2:S99-101.
9. Mayer-Davis EJ, Beyer J, Bell RA, Dabelea D, D'Agostino R Jr, Imperatore G, Lawrence JM, Liese AD, Liu L, Marcovina S, Rodriguez B; SEARCH for Diabetes in Youth Study Group. Diabetes in African American youth: prevalence, incidence, and clinical characteristics: the SEARCH for Diabetes in Youth Study. Diabetes Care. 2009;32 Suppl 2: S112-22.
10. Ogden CL, Carroll MD, Flegal KM. High body mass index for age among US children and adolescents, 2003-2006. JAMA. 2008;299(20): 2401-5. (Pubitemid 351749238)
11. Chiarelli F, Marcovecchio ML. Insulin resistance and obesity in childhood. Eur J Endocrinol. 2008;159 Suppl 1:S67-74.
12. Kaput J. Nutrigenomics research for personalized nutrition and medicine. Curr Opin Biotechnol. 2008;19(2):110-20.
13. Ordovas JM. Genotype-phenotype associations: modulation by diet and obesity. Obesity (Silver Spring). 2008;16 Suppl 3:S40-6.
14. Ordovas JM, Tai ES. Why study gene-environment interactions? Curr Opin Lipidol. 2008;19(2):158-67. (Pubitemid 351483303)
15. Myles S, Tang K, Somel M, Green RE, Kelso J, Stoneking M. Identification and analysis of genomic regions with large between-population differentiation in humans. Ann Hum Genet. 2008;72(Pt 1):99-110.
16. Jorde LB, Wooding SP. Genetic variation, classification and 'race'. Nat Genet. 2004;36 Suppl 1:S28-33.
17. Lao O, Lu TT, Nothnagel M, Junge O, Freitag-Wolf S, Caliebe A, Balascakova M, Bertranpetit J, Bindoff LA, Comas D, Holmlund G, Kouvatsi A, Macek M, Mollet I, Parson W, Palo J, Ploski R, Sajantila A, Tagliabracci A, Gether U, Werge T, Rivadeneira F, Hofman A, Uitterlinden AG, Gieger C, Wichmann HE, Ruther A, Schreiber S, Becker C, Nurnberg P, Nelson MR, Krawczak M, Kayser M. Correlation between genetic and geographic structure in Europe. Curr Biol. 2008;18(16):1241-8.
18. Novembre J, Johnson T, Bryc K, Kutalik Z, Boyko AR, Auton A, Indap A, King KS, Bergmann S, Nelson MR, Stephens M, Bustamante CD. Genes mirror geography within Europe. Nature. 2008;456(7218):98-101.
19. Shriver MD, Mei R, Parra EJ, Sonpar V, Halder I, Tishkoff SA, Schurr TG, Zhadanov SI, Osipova LP, Brutsaert TD, Friedlaender J, Jorde LB, Watkins WS, Bamshad MJ, Gutierrez G, Loi H, Matsuzaki H, Kittles RA, Argyropoulos G, Fernandez JR, Akey JM, Jones KW. Large-scale SNP analysis reveals clustered and continuous patterns of human genetic variation. Hum Genomics. 2005;2(2):81-9.
20. Tishkoff SA, Verrelli BC. Patterns of human genetic diversity: implications for human evolutionary history and disease. Annu Rev Genomics Hum Genet. 2003;4:293-340. (Pubitemid 37392927)
21. Dreon DM, Fernstrom HA, Williams PT, Krauss RM. A very-low-fat diet is not associated with improved lipoprotein profiles in men with a predominance of large, low-density lipoproteins. Am J Clini Nutr. 1999;69(3):411-8. (Pubitemid 29104560)
22. Van Ommen B, Keijer J, Heil SG, Kaput J. Challenging homeostasis to define biomarkers for individual nutrition related health. Mol Nutr Food Res. 2009 Jun 10.
23. Williams RP. Biochemical individuality: the basis for the genetotrophic concept. New Canaan, CT: Keats Publishing; 1956.
24. Kaput J, Perlina A, Hatipoglu B, Bartholomew A, Nikolsky Y. Nutrigenomics: concepts and applications to pharmacogenomics and clinical medicine. Pharmacogenomics. 2007;8(4): 369-90. (Pubitemid 46591098)
25. Gallou-Kabani C, Junien C. Nutritional epigenomics of metabolic syndrome: new perspective against the epidemic. Diabetes. 2005;54(7):1899-906. (Pubitemid 40911250)
26. House SH. Nurturing the brain nutritionally and emotionally from before conception to late adolescence. Nutr Health. 2007;19(1-2):143-61. (Pubitemid 351195795)
27. Le Clair C, Abbi T, Sandhu H, Tappia PS. Impact of maternal undernutrition on diabetes and cardiovascular disease risk in adult offspring. Can J Physiol Pharmacol. 2009;87(3):161-79.
28. Mathers JC. Early nutrition: impact on epigenetics. Forum Nutr. 2007;60:42-8.
29. Painter RC, Roseboom TJ, Bleker OP. Prenatal exposure to the Dutch famine and disease in later life: an overview. Reprod Toxicol. 2005;20(3): 345-52. (Pubitemid 40949554)
30. Waterland RA, Michels KB. Epigenetic epidemiology of the developmental origins hypothesis. Annu Rev Nutr. 2007;27:363-88. (Pubitemid 351373362)
31. Jirtle RL, Skinner MK. Environmental epigenomics and disease susceptibility. Nat Rev Genet. 2007;8(4): 253-62. (Pubitemid 46439287)
32. Holick MF, Chen TC. Vitamin D deficiency: a worldwide problem with health consequences. Am J Clin Nutr. 2008;87(4):1080S-6S. (Pubitemid 351549267)
33. Holick MF. Diabetes and the vitamin D connection. Curr Diab Rep. 2008;8(5):393-8.
34. Liu E, Meigs JB, Pittas AG, McKeown NM, Economos CD, Booth SL, Jacques PF. Plasma 25-hydroxyvitamin D is associated with markers of the insulin resistant phenotype in nondiabetic adults. J Nutr. 2009;139(2):329-34.
35. Palomer X, Gonzalez-Clemente JM, Blanco-Vaca F, Mauricio D. Role of vitamin D in the pathogenesis of type 2 diabetes mellitus. Diabetes Obes Metab. 2008;10(3):185-97. (Pubitemid 351249776)
36. Peechakara SV, Pittas AG. Vitamin D as a potential modifier of diabetes risk. Nat Clin Pract Endocrinol Metab. 2008;4(4):182-3. (Pubitemid 351430911)
37. Penckofer S, Kouba J, Wallis DE, Emanuele MA. Vitamin D and diabetes: let the sunshine in. Diabetes Educ. 2008;34(6):939-40, 942, 944 passim.
38. Tai K, Need AG, Horowitz M, Chapman IM. Vitamin D, glucose, insulin, and insulin sensitivity. Nutrition. 2008;24(3):279-85.
39. Spinneker A, Sola R, Lemmen V, Castillo MJ, Pietrzik K, Gonzalez-Gross M. Vitamin B6 status, deficiency and its consequences--an overview. Nutr Hosp. 2007;22(1):7-24. (Pubitemid 46347705)
40. Nobili V, Alisi A, Panera N, Agostoni C. Low birth weight and catch-up-growth associated with metabolic syndrome: a ten year systematic review. Pediatr Endocrinol Rev. 2008;6(2):241-7.
41. Smith C, Richards R. Dietary intake, overweight status, and perceptions of food insecurity among homeless Minnesotan youth. Am J Hum Biol. 2008;20(5):550-63.
42. Kaput J, Klein KG, Reyes EJ, Kibbe WA, Cooney CA, Jovanovic B, Visek WJ, Wolff GL. Identification of genes contributing to the obese yellow Avy phenotype: caloric restriction, genotype, diet x genotype interactions. Physiol Genomics. 2004;18(3):316-24. (Pubitemid 39319515)
43. Kaput J, Swartz D, Paisley E, Mangian H, Daniel WL, Visek WJ. Diet-disease interactions at the molecular level: an experimental paradigm. J Nutr. 1994;124(8 Suppl):1296S-1305S. (Pubitemid 24283390)
44. Park EI, Paisley EA, Mangian HJ, Swartz DA, Wu MX, O'Morchoe PJ, Behr SR, Visek WJ, Kaput J. Lipid level and type alter stearoyl CoA desaturase mRNA abundance differently in mice with distinct susceptibilities to diet-influenced diseases. J Nutr. 1997;127(4):566-73. (Pubitemid 27163621)
45. Improvement ACfH. Assessment of childhood and adolescent obesity in Arkansas. Year Five (Fall 2007-Spring 2008). Little Rock: Arkansas Center for Health Improvement; 2008. p. 47.
46. Champagne CM, Bogle ML, McGee BB, Yadrick K, Allen HR, Kramer TR, Simpson P, Gossett J, Weber J. Dietary intake in the lower Mississippi delta region: results from the Foods of our Delta Study. J Am Diet Assoc. 2004;104(2):199-207. (Pubitemid 38183186)
47. Stuff JE, Casey PH, Szeto KL, Gossett JM, Robbins JM, Simpson PM, Connell C, Bogle ML. Household food insecurity is associated with adult health status. J Nutr. 2004;134(9):2330-5. (Pubitemid 39201604)
48. Stuff JE, Horton JA, Bogle ML, Connell C, Ryan D, Zaghloul S, Thornton A, Simpson P, Gossett J, Szeto K. High prevalence of food insecurity and hunger in households in the rural Lower Mississippi Delta. J Rural Health. 2004;20(2):173-80. (Pubitemid 38380999)
49. Addison CC, Jenkins BW, White MS, Young L. Examination of the food and nutrient content of school lunch menus of two school districts in Mississippi. Int J Environ Res Public Health. 2006;3(3):278-85. (Pubitemid 350003072)
50. Israel B, Eng E, Schulz A, Parker E, editors. Methods in community-based participatory research for health. San Francisco: Jossey-Bass; 2005. p. 479.
51. McCabe-Sellers B, Lovera D, Nuss H, Wise C, Green B, Teitel C, Ning B, Clark B, Bogle M, Kaput J. Personalizing nutrigenomics research through community based participatory research and omics technologies. OMICS. 2008;12(4):263-72. (Pubitemid 352773936)
52. Kaput J, Cotton RG, Hardman L, Watson M, Al Aqeel AI, Al-Aama JY, Al-Mulla F, Alonso S, Aretz S, Auerbach AD, Bapat B, Bernstein IT, Bhak J, Bleoo SL, Blocker H, Brenner SE, Burn J, Bustamante M, Calzone R, Cambon-Thomsen A, Cargill M, Carrera P, Cavedon L, Cho YS, Chung YJ, Claustres M, Cutting G, Dalgleish R, den Dunnen JT, Diaz C, Dobrowolski S, Dos Santos MR, Ekong R, Flanagan SB, Flicek P, Furukawa Y, Genuardi M, Ghang H, Golubenko MV, Greenblatt MS, Hamosh A, Hancock JM, Hardison R, Harrison TM, Hoffmann R, Horaitis R, Howard HJ, Barash CI, Izagirre N, Jung J, Kojima T, Laradi S, Lee YS, Lee JY, Gil-da-Silva-Lopes VL, Macrae FA, Maglott D, Marafie MJ, Marsh SG, Matsubara Y, Messiaen LM, Moslein G, Netea MG, Norton ML, Oefner PJ, Oetting WS, O'Leary JC, de Ramirez AM, Paalman MH, Parboosingh J, Patrinos GP, Perozzi G, Phillips IR, Povey S, Prasad S, Qi M, Quin DJ, Ramesar RS, Richards CS, Savige J, Scheible DG, Scott RJ, Seminara D, Shephard EA, Sijmons RH, Smith TD, Sobrido MJ, Tanaka T, Tavtigian SV, Taylor GR, Teague J, Topel T, Ullman-Cullere M, Utsunomiya J, van Kranen HJ, Vihinen M, Webb E, Weber TK, Yeager M, Yeom YI, Yim SH, Yoo HS; Contributors to the Human Variome Project Planning Meeting. Planning the Human Variome Project: the Spain report. Hum Mutat. 2009;30(4):496-510.
53. Yu W, Wulf A, Liu T, Khoury MJ, Gwinn M. Gene Prospector: an evidence gateway for evaluating potential susceptibility genes and interacting risk factors for human diseases. BMC Bioinformatics. 2008;9:528.
54. Meigs JB, Shrader P, Sullivan LM, McAteer JB, Fox CS, Dupuis J, Manning AK, Florez JC, Wilson PW, D'Agostino RB Sr, Cupples LA. Genotype score in addition to common risk factors for prediction of type 2 diabetes. N Engl J Med. 2008;359(21):2208-19.
55. Calvo M, Whiting S. Prevalence of vitamin D insufficiency in Canada and the United States: importance to health status and efficacy of current food fortification and dietary supplement use. Nutr Rev. 2003;61(3):107-13. (Pubitemid 37259965)
56. Renstrom F, Payne F, Nordstrom A, Brito EC, Rolandsson O, Hallmans G, Barroso I, Nordstrom P, Franks PW; GIANT wiaewstudy results for obesity in 4923 adults from Northern Sweden. Hum Mol Genet. 2009;18(8):1489-96.
57. Sankararaman S, Sridhar S, Kimmel G, Halperin E. Estimating local ancestry in admixed populations. Am J Hum Genet. 2008;82(2):290-303. (Pubitemid 351726099)