Personalizing nutrigenomics research through community based participatory research and omics technologies

OMICS A Journal of Integrative Biology

Volumn 12, Issue 4, 2008, Pages 263-272

  McCabe Sellers, Beverly ^a   Lovera, Dalia ^a   Nuss, Henry ^a   Wise, Carolyn ^b   Ning, Baitang ^b   Teitel, Candee ^b   Clark, Beatrice Shelby ^c   Toennessen, Terri ^b   Green, Bridgett ^b   Bogle, Margaret L ^a   Kaput, Jim ^b,d  

^a Lower Mississippi Delta Nutrition Intervention Research Initiative   (United States)

^b NATIONAL CENTER FOR TOXICOLOGICAL RESEARCH   (United States)

^c Boys Girls and Adults Community Development Center ^*  (United States)

^d CENTER FOR DRUG EVALUATION AND RESEARCH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENE EXPRESSION; GENE INTERACTION; GENE MAPPING; GENETIC VARIABILITY; HEALTH CARE; HUMAN; LIFESTYLE MODIFICATION; MEDICAL RESEARCH; NUTRIGENOMICS; NUTRITIONAL ASSESSMENT; PRIORITY JOURNAL; REVIEW; RISK FACTOR; SINGLE NUCLEOTIDE POLYMORPHISM;

COMMUNITY-BASED PARTICIPATORY RESEARCH; GENETIC SCREENING; GENETIC VARIATION; HUMANS; NUTRIGENOMICS; RESEARCH DESIGN; UNITED STATES; UNITED STATES DEPARTMENT OF AGRICULTURE;

EID: 57149108053     PISSN: 15362310     EISSN: None     Source Type: Journal    
DOI: 10.1089/omi.2008.0041     Document Type: Review

References (93)

1. Adjers, K., Karjalainen, J., Pessi, T., Eklund, C., and M. Hurme (2005). Epistatic effect of TLR4 and IL4 genes on the risk of asthma in females. Int Arch Allergy Immunol 138, 251-256.
2. Beasley, J. W., Starfield, B., Van Weel, C., Rosser. W.W., and Haq, C.L. (2007). Global health and primary care research. J Am Board Fam Med 20, 518-526.
3. Bennett, S.T., Barnes, C., Cox, A., Davies, L., and C. Brown (2005). Toward the 1,000 dollars human genome. Pharmacogenomics 6, 373-382.
4. Blander, G., and Guarente, L. (2004). The Sir2 family of protein deacetylases. Annu Rev Biochem 73, 417-435.
5. Bogle, M., Stuff, J.E., Davis, L., Forrester, I., Strickland, E., Casey, P.H., et al. (2001). Validity of a telephone-administered 24-hour dietary recall in telephone and non-telephone households in the rural Lower Mississippi Delta region. . J Am Diet Assoc. 101, 216-222.
6. Boyer, B.B., G.V. Mohatt, C. Lardon, R. Plaetke, B.R. Luick, S.H. Hutchison, et al. (2005). Building a community-based participatory research center to investigate obesity and diabetes in Alaska Natives. Int J Circumpolar Health 64, 281-290.
7. Boyer, B., Mohatt, GV., Pasker, R.L., Drew, E.M., and McGlone, K.K. (2007). Sharing results from complex disease genetic studies: a community based participatory research approach. Int J Circumpolar Health 66, 11-22.
8. Brown, C.M., Rea, T.J., Hamon, S.C., Hixson, J.E., Boerwinkle, E., Clark, A.G., et al. (2006). The contribution of individual and pairwise combinations of SNPs in the APOA1 and APOC3 genes to interindividual HDL-C variability. J Mol Med 84, 561-572.
9. Carithers, T., Dubbert, P.M., Crook, E., Davy, B., Wyatt, S.B., Bogle, M.L., et al. (2005). Dietary assessment in African Americans: methods used in the Jackson Heart Study. Ethn Dis 15(Suppl 6), 49-55.
10. Casey, P., Goolsby, S.L., Lensing, S.Y., Perloff, B.P., Bogle, M.L. (1999). The use of telephone interview methodology to obtain 24-hour dietary recalls. J Am Diet Assoc 99, 1406-1411.
11. Casey, P., Horton, J., Bogle, M.L., Formby, B., Forsythe, W., Goolsby, S., et al. (2004). Self reported health of residents of the Lower Mississippi Delta. J Health Care Poor Underserved 15, 645-662.
12. Champagne, C., Bogle, M.L., Mcgee, B.B., Yadrick, K., Allen, H.R., Kramer, T.R., et al. (2004). Dietary intake in the lower Mississippi delta region: results from the Foods of our Delta Study. J Am Diet Assoc 104, 199-207.
13. Champagne, C. M., Casey, P.H., Connell, C.L., Stuff, J.E., Gossett, J.M., Harsha, D.W., et al. (2007). Poverty and food intake in rural America: diet quality is lower in food insecure adults in the Mississippi Delta. J Am Diet Assoc 107, 1886-1894.
14. Chen, D.T., Jones, L., and Gelberg, L. (2006). Ethics of clinical research within a community-academic partnered participatory framework. Ethn Dis 16(Suppl 1), S118-S135.
15. Connell, C., Nord, M., Lofton, K.L., Yadrick, K. (2004). Food security of older children can be assessed using a standardized survey instrument. J Nutr 134, 2566-257.
16. Connell, C., Yadrick, M.K., Simpson, P., Gossett, J., Mcgee, B.B., Bogle, M.L. (2007). Food supply adequacy in the Lower Mississippi Delta. J Nutr Educ Behav 39, 77-83.
17. Corella, D., and Ordovas, J.M. (2005). Single nucleotide polymorphisms that influence lipid metabolism: interaction with dietary factors. Annu Rev Nutr 25, 341-390.
18. Cornwall, A., and Jewkes, R. (1995). What is participatory research? Soc Sci Med 41, 1667-1676.
19. Dalma-Weiszhausz, D.D., Warrington, J., Tanimoto, E.Y., and Miyada, C.G. (2006). The affymetrix GeneChip platform: an overview. Methods Enzymol 410, 3-28.
20. Desai, J., Solberg, L., Clark, C., Reger, L., Pearson, T., Bishop, D., et al. (2003). Improving diabetes care and outcomes: the secondary benefits of a public health-managed care research collaboration. J Public Health Manag Pract Suppl, S36-S43.
21. Dolinoy, D.C., Das, R., Weidman, J.R., and Jirtle, R.J. (2007). Metastable epialleles, imprinting, and the fetal origins of adult diseases. Pediatr Res 61, 30R-37R.
22. Eberharter, A. and Becker, B.P. (2002). Histone acetylation: a switch between repressive and permissive chromatin. Second in review series on chromatin dynamics. EMBO Rep 3, 224-229.
23. Frazer, K.A., Ballinger, C.G., Cox, D.R., Hinds, D.A., Stuve, L.L., Gibbs, R.A. et al. (2007). A second generation human haplotype map of over 3.1 million SNPs. Nature 449, 851-861.
24. Gardiner, K. (2004). Gene-dosage effects in Down syndrome and trisomic mouse models. Genome Biol 5, 244.
25. Garosi, P., De Filippo, C., Van Erk, M., Rocca-Serra, P., Sansone, S.A., and Elliott, R. (2005). Defining best practice for microarray analyses in nutrigenomic studies. Br J Nutr 93, 425-432.
26. Gellekink, H., Den Heijer, M., Heil, S.G., and Blom, H.J. (2005). Genetic determinants of plasma total homocysteine. Semin Vasc Med 5, 98-109.
27. Giachello, A. L., Arrom, J.O., Davis, M., Sayad, J.V., Ramirez, D., Nandi, C., et al. (2003). Reducing diabetes health disparities through community-based participatory action research: the Chicago Southeast Diabetes Community Action Coalition. Public Health Rep 118, 309-323.
28. Gibney, M.J., Walsh, M., Brennan, L., Roche, H.M., German, B., and van Ommen, B. (2005). Metabolomics in human nutrition: opportunities and challenges. Am J Clin Nutr 82, 497-503.
29. Gibson, R. (2005). Development of a population specific FFA begins from collection of 24-hour recalls or food records from a representative sample of the population of interest. . Principles of Nutritional Assessment. R. Gibson, ed. (Oxford University Press, Oxford UK) pp. 46-50.
30. Goolsby, S., Casey, P.H., Stuff, J.E., Zaghloul, S., Weber, J., Gossett, J., et al. (2006). Consumption of calcium among African American adolescent girls. Ethn Dis 16, 476-482.
31. Hamon, S.C., Kardia, S.L., Boerwinkle, E., Liu, K., Klos, K.L., Clark, A.G., et al. (2006). Evidence for consistent intragenic and intergenic interactions between SNP effects in the APOA1/C3/A4/A5 gene cluster. Hum Hered 61, 87-96.
32. HapMap Consortium. (2003). The International HapMap Project. Nature 426, 789-796.
33. HapMap Consortium. (2004a). Integrating ethics and science in the International HapMap Project. Nat Rev Genet 5, 467-475.
34. HapMap Consortium. (2004b). Self-reported health of residents of the Mississippi Delta. J Health Care Poor Underserved 15, 645-662.
35. Harrison, G., ed. (1997). Nutrition and Health Status in the Lower Mississippi Delta of Arkansas, Louisiana, and Mississippi: A Review of Existing Data. (Westat, Rockville, MD).
36. Helgadottir, A., Manolescu, A., Helgason, A., Thorleifsson, G., Thorsteinsdottir, U., Gudbjartsson, D.F., et al. (2006). A variant of the gene encoding leukotriene A4 hydrolase confers ethnicity-specific risk of myocardial infarction. Nat Genet 38, 68-74.
37. Holmes, E., Loo, R.L., Stamler, J., Bictash, M., Yap, I.K., Chan, Q., et al. (2008). Human metabolic phenotype diversity and its association with diet and blood pressure. Nature 453, 396-400.
38. Horowitz, C.R., Goldfinger, J.Z., Muller, E., Pulichino, R.S., Vance, T.L., Arniella, G., et al. (2008). A model for using community-based participatory research to address the diabetes epidemic in east harlem. Mt Sinai J Med 75, 13-21.
39. Hsiao, P.W., Deroo, B.J., and Archer, T.K. (2002). Chromatin remodeling and tissue-selective responses of nuclear hormone receptors. Biochem Cell Biol 80, 343-351.
40. Hueston, W.J., Mainous, A.G., 3rd, Weiss, B.D., Macaulay, A.C., Hickner, J., and Sherwood, R.A. (2006). Protecting participants in family medicine research: a consensus statement on improving research integrity and participants' safety in educational research, community-based participatory research, and practice network research. Fam Med 38, 116-120.
41. Israel, B., Schulz, A.J., Parker, E.A., Becker, A.B. (1998). Review of community based research: assessing partnership approaches to improve public health. Ann Rev Publich Health 19, 173-202.
42. Israel, B., Schulz, A.J., Parker, E.A., Becker, A.B., Allen, A.J., III, and Guzman, J.R. (2003) In: Critical Issues in Developing and Following Commuity Based Participatory Research Principles. Community-Based Participatory Research for Health. M.M.N. Wallerstein, ed. Jossey-Bass, San Francisco, CA) pp. 53-70.
43. Jorde, L.B., and Wooding, S.P. (2004). Genetic variation, classification and 'race'. Nat Genet 36(Suppl 1), S28-S33.
44. Kaput, J. (2008). Nutrigenomics research for personalized nutrition and medicine. Curr Opin Biotechnol 19, 110-120.
45. Kaput, J., Ordovas, J.M., Ferguson, L., Van Ommen, B., Rodriguez, R.L., Allen, L., et al. (2005). The case for strategic international alliances to harness nutritional genomics for public and personal health. Br J Nutr 94, 623-632.
46. Kaput, J., Noble, J., Hatipoglu, B., Kohrs, K., Dawson, K., and Bartholomew, A. (2007a). Application of nutrigenomic concepts to Type 2 diabetes mellitus. Nutr Metab Cardiovasc Dis 17, 89-103.
47. Kaput, J., Perlina, A., Hatipoglu, B., Bartholomew, A., and Nikolsky, Y. (2007b). Nutrigenomics: concepts and applications to pharmacogenomics and clinical medicine. Pharmacogenomics 8, 369-390.
48. Kieffer, E.C., Willis, S.K., Odoms-Young, A.M., Guzman, J.R., Allen, A.J., Two Feathers, J., et al. (2004). Reducing disparities in diabetes among African-American and Latino residents of Detroit: the essential role of community planning focus groups. Ethn Dis 14(Suppl 1), S27-S37.
49. Kikunaga, S., Tin, T., Ishibashi, G., Wang, D.H., and Kira, S. (2007). The application of a handheld personal digital assistant with camera and mobile phone card (Wellnavi) to the general population in a dietary survey. J Nutr Sci Vitaminol (Tokyo) 53, 109-116.
50. Klerk, M., Verhoef, P., Clarke, R., Blom, H.J., Kok, F.J., and Schouten, E.G. (2002). MTHFR 677C → T polymorphism and risk of coronary heart disease: a meta-analysis. JAMA 288, 2023-2031.
51. Kone, A., Sullivan, M., Senturia, K., Chrisman, N.J., & Krieger, J.W. (2000). Improving collaboration between researchers and communities. Public Health Report 115, 243-248.
52. Kornman, K., Rogus, J., Roh-Schmidt, H., Krempin, D., Davies, A.J., Grann, K., et al. (2007). Interleukin-1 genotype-selective inhibition of inflammatory mediators by a botanical: a nutrigenetics proof of concept. Nutrition 23, 844-852.
53. Kussmann, M. (2007). How to comprehensively analyse proteins and how this influences nutritional research. Clin Chem Lab Med 45, 288-300.
54. Levy, S., Sutton, G., Ng, P.C., Feuk, L., Halpern, A.L., Walenz, B.P., et al. (2007). The diploid genome sequence of an individual human. PLoS Biol 5, e254.
55. Li, J.Z., Absher, D.M., Tang, H., Southwick, A.M., Casto, A.M., Ramachandran, S., et al. (2008). Worldwide human relationships inferred from genome-wide patterns of variation. Science 319, 1100-1104.
56. Mannila, M.N., Eriksson, P., Ericsson, C.G., Hamsten, A., and Silveira, A. (2006). Epistatic and pleiotropic effects of polymorphisms in the fibrinogen and coagulation factor XIII genes on plasma fibrinogen concentration, fibrin gel structure and risk of myocardial infarction. Thromb Haemost 95, 420-427.
57. Mathers, J.C. (2007). Early nutrition: impact on epigenetics. Forum Nutr 60, 42-48.
58. McCabe-Sellers, B.J., Bowman, S., Stuff, J.E., Champagne, C.M., Simpson, P.M., and Bogle, M.L. (2007). Assessment of the diet quality of US adults in the Lower Mississippi Delta. Am J Clin Nutr 86, 697-706.
59. McGee, B., Richardson, V. Johnson, G.S., Thornton, A., Johnson, C., Yadrick, K., et al. (2008). Perceptions of factors influencing healthful food consumption behavior in the Lower Mississippi Delta: focus group findings. J Nutr Educ Behav 40, 102-109.
60. Mold, J.W. and Peterson, K.A. (2005). Primary care practice-based research networks: working at the interface between research and quality improvement. Ann Fam Med 3(Suppl 1), S12-S20.
61. Musani, S.K., Shriner, D., Liu, N., Feng, R., Coffey, C.S., Yi, N., et al. (2007). Detection of gene x gene interactions in genomewide association studies of human population data. Hum Hered 63, 67-84.
62. Ndirangu, M., Perkins, H., Yadrick, K., West, J.R., Bogle, M.L., Avis-Williams, A., et al.(2007). Conducting needs assessment using the comprehensive participatory planning and evaluation model to develop nutrition and physical activity interventions in a rural community in the Mississippi Delta. Prog Community Health Partnerships Res, Educ, Action 1, 41-48.
63. Ndirangu, M., Yadrick, K., Bogle, M.L., and Graham-Krege, S. (2008). Community-Academic Partnerships to Promote Nutrition in the Lower Mississippi Delta: Community Members? Perceptions of Effectivenss, Barriers, and Factors Related to Success. Health Promot Pract. 9, 237-245.
64. O'Fallon, L., Tyson, F.L., Dearry, A (2000). Successful models of community based participatory research. Environ Health Perspect 110(Suppl 2), 155-159.
65. Picard, F., M. Kurtev, N. Chung, A. Topark-Ngarm, T. Senawong, R. Machado De Oliveira, et al. (2004). Sirt1 promotes fat mobilization in white adipocytes by repressing PPARgamma. Nature 429, 771-776.
66. Plumb, M., Collins, N., Cordeiro, J.N., Kavanaugh-Lynch, M. (2008). Assessing process and outcomes,: evaluating community based participatory research. Prog Community Health Partnerships Res Educ Action 2, in press.
67. Porto, G.A., Rodrigues, H., Cabeda, P., Portal, J.M., Ruivo, C., Justica, A., (1998). Major histocompatibility complex class I associations in iron overload - evidence for a new link between the Hfe H63d mutation, Hla-A29, and non-classical forms of hemochromatosis. Immunogenetics 47, 404-410.
68. Rockhill, B., Newman, B., and Weinberg, C. (1998). Use and misuse of population attributable fractions. Am J Public Health 88, 15-19.
69. Rossell, S., Van der Weijden, C.C., Lindenbergh, A., Van Tuijl, A., Francke, C., Bakker, B.M., et al. (2006). Unraveling the complexity of flux regulation: a new method demonstrated for nutrient starvation in Saccharomyces cerevisiae. Proc Natl Acad Sci USA 103, 2166-2171.
70. Rutishauser, I.H. (2005). Dietary intake measurements. Public Health Nutr 8, 1100-1107.
71. Sankararaman, S., Sridhar, S., Kimmel, G., and Halperin, E. (2008). Estimating local ancestry in admixed populations. Am J Hum Genet 82, 290-303.
72. Schulz, A.J., Zenk, S., Odoms-Young, A., Hollis-Neely, T., Nwankwo, R., Lockett, M., et al. (2005). Healthy eating and exercising to reduce diabetes: exploring the potential of social determinants of health frameworks within the context of community-based participatory diabetes prevention. Am J Public Health 95, 645-651.
73. Shendure, J.A., Porreca, G.J., and Church, G.M. (2008). Overview of DNA sequencing strategies. Curr Protoc Mol Biol Chapter 7, Unit 7 1.
74. Smith, J., Lensing, S., Horton, J.A., Lovejoy, J., Zaghloul, S., Forrester, I., et al. (1999). Prevalence of self-reported nutrition-related health problems in the Lower Mississippi Delta. Am J Public Health 89, 1418-1421.
75. Smith, J.A., Arnett, D.K., Kelly, R.J., Ordovas, J.M., Sun, Y.V., Hopkins, P.M., et al. (2008). The genetic architecture of fasting plasma triglyceride response to fenofibrate treatment. Eur J Hum Genet 16, 603-613.
76. Steemers, F.J. and Gunderson, K.L. (2005). Illumina, Inc. Pharmacogenomics 6, 777-782.
77. Stuff, J., Horton, J.A., Bogle, M.L., Connell, C., Ryan, D., Zaghloul, S., (2004a). High prevalence of food insecurity and hunger in households in the rural Lower Mississippi Delta. J Rural Health 20, 173-180.
78. Stuff, J.E., Casey, P.H., Szeto, K.L., Gossett, J.M., Robbins, J.M., Simpson, P.M., et al. (2004b). Household food insecurity is associated with adult health status. J Nutr 134, 2330-2335.
79. Szyf, M. (2007). The dynamic epigenome and its implications in toxicology. Toxicol Sci 100, 7-23.
80. Talegawkar, S.A., Johnson, E.J., Carithers, T., Taylor, H.A., Jr., Bogle, M.L., and Tucker, K.L. (2007). Total alpha-tocopherol intakes are associated with serum alpha-tocopherol concentrations in African American adults. J Nutr 137, 2297-303.
81. Talegawkar, S.A., Johnson, E.J., Carithers, T.C., Taylor Jr., H.A., Bogle, M.L., Tucker, K.L. (2008). Carotenoid intakes assessed by food-frequency questionnaires (FFQs) are associated with serum cartenoid concentrations in the Jackson Heart Study: validation of the Jackson Heart Study Delta NIRI FFQs. Public Health Nutrition 11, 989-997.
82. Tishkoff, S.A. and Kidd, K.K. (2004). Implications of biogeography of human populations for 'race' and medicine. Nat Genet 36 (Suppl 1), S21-S27.
83. Tishkoff, S.A., and Verrelli, B.C. (2003). Patterns of human genetic diversity: implications for human evolutionary history and disease. Annu Rev Genomics Hum Genet 4, 293-340.
84. Tracy, R.P. (2008). "Deep phenotyping": characterizing populations in the era of genomics and systems biology. Curr Opin Lipidol 19, 151-157.
85. Tucker, K.L. (2007). Assessment of usual dietary intake in population studies Of Gene-Diet Interaction. Nutr Metab Cardiovasc Dis 17, 74-81.
86. Tucker, K.L., Maras, J., Champagne, C., Connell, C., Goolsby, S., Weber, J., et al. (2005). A regional food-frequency questionnaire for the US Mississippi Delta. Public Health Nutr 8, 87-96.
87. Tuo, J., Ning, B., Bojanowski, C.M., Lin, Z.N., Ross, R.J., Reed, G.F., et al. (2006). Synergic effect of polymorphisms in ERCC6 5′ flanking region and complement factor H on age-related macular degeneration predisposition. Proc Natl Acad Sci USA 103, 9256-9261.
88. Vineis, P. and Kriebel, D. (2006). Causal models in epidemiology: past inheritance and genetic future. Environ Health 5, 21.
89. Waterland, R.A., and Jirtle, R.L. (2003). Transposable elements: targets for early nutritional effects on epigenetic gene regulation. Mol Cell Biol 23, 5293-300.
90. Wells, K.B., Staunton, A., Norris, K.C., Bluthenthal, R., Chung, B., Gelberg, L., et al. (2006). Building an academic-community partnered network for clinical services research: the Community Health Improvement Collaborative (CHIC). Ethn Dis 16(Suppl 1): S3-S17.
91. Wheeler, D.A., Srinivasan, M., Egholm, M., Shen, Y., Chen, L., McGuire, A., et al. (2008). The complete genome of an individual by massively parallel DNA sequencing. Nature 452, 872-876.
92. Wolford, J.K., and Vozarova De Courten, B. (2004). Genetic basis of type 2 diabetes mellitus: implications for therapy. Treat Endocrinol 3, 257-267.
93. Yadrick, K., Horton, J., Stuff, J., Mcgee, B., Bogle, M., Davis, L., et al. (2001). Perceptions of community nutrition and health needs in the Lower Mississippi Delta: a key informant approach. J Nutr Educ 33, 266-277.