-
1
-
-
0033518256
-
Synexpression groups in eukaryotes
-
Niehrs C., Pollet N. Synexpression groups in eukaryotes. Nature 1999, 402:483-487.
-
(1999)
Nature
, vol.402
, pp. 483-487
-
-
Niehrs, C.1
Pollet, N.2
-
2
-
-
0034307684
-
Probability in transcriptional regulation and its implications for leukocyte differentiation and inducible gene expression
-
Hume D.A. Probability in transcriptional regulation and its implications for leukocyte differentiation and inducible gene expression. Blood 2000, 96:2323-2328.
-
(2000)
Blood
, vol.96
, pp. 2323-2328
-
-
Hume, D.A.1
-
3
-
-
54449093241
-
Differentiation and heterogeneity in the mononuclear phagocyte system
-
Hume D.A. Differentiation and heterogeneity in the mononuclear phagocyte system. Mucosal Immunol. 2008, 1:432-441.
-
(2008)
Mucosal Immunol.
, vol.1
, pp. 432-441
-
-
Hume, D.A.1
-
4
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J., Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., et al. The transcriptional landscape of the mammalian genome. Science 2005, 309:1559-1563.
-
(2005)
Science
, vol.309
, pp. 1559-1563
-
-
Carninci, P.1
Kasukawa, T.2
Katayama, S.3
Gough, J.4
Frith, M.C.5
Maeda, N.6
Oyama, R.7
Ravasi, T.8
Lenhard, B.9
Wells, C.10
Kodzius, R.11
Shimokawa, K.12
Bajic, V.B.13
Brenner, S.E.14
Batalov, S.15
Forrest, A.R.16
Zavolan, M.17
Davis, M.J.18
Wilming, L.G.19
Aidinis, V.20
Allen, J.E.21
Ambesi-Impiombato, A.22
Apweiler, R.23
Aturaliya, R.N.24
Bailey, T.L.25
Bansal, M.26
Baxter, L.27
Beisel, K.W.28
Bersano, T.29
Bono, H.30
Chalk, A.M.31
Chiu, K.P.32
Choudhary, V.33
Christoffels, A.34
Clutterbuck, D.R.35
Crowe, M.L.36
Dalla, E.37
Dalrymple, B.P.38
de Bono, B.39
Della Gatta, G.40
di Bernardo, D.41
Down, T.42
Engstrom, P.43
Fagiolini, M.44
Faulkner, G.45
Fletcher, C.F.46
Fukushima, T.47
Furuno, M.48
Futaki, S.49
Gariboldi, M.50
Georgii-Hemming, P.51
Gingeras, T.R.52
Gojobori, T.53
Green, R.E.54
Gustincich, S.55
Harbers, M.56
Hayashi, Y.57
Hensch, T.K.58
Hirokawa, N.59
Hill, D.60
Huminiecki, L.61
Iacono, M.62
Ikeo, K.63
Iwama, A.64
Ishikawa, T.65
Jakt, M.66
Kanapin, A.67
Katoh, M.68
Kawasawa, Y.69
Kelso, J.70
Kitamura, H.71
Kitano, H.72
Kollias, G.73
Krishnan, S.P.74
Kruger, A.75
Kummerfeld, S.K.76
Kurochkin, I.V.77
Lareau, L.F.78
Lazarevic, D.79
Lipovich, L.80
Liu, J.81
Liuni, S.82
McWilliam, S.83
Madan Babu, M.84
Madera, M.85
Marchionni, L.86
Matsuda, H.87
Matsuzawa, S.88
Miki, H.89
Mignone, F.90
Miyake, S.91
Morris, K.92
Mottagui-Tabar, S.93
Mulder, N.94
Nakano, N.95
Nakauchi, H.96
Ng, P.97
Nilsson, R.98
Nishiguchi, S.99
more..
-
5
-
-
33744805985
-
Genome-wide analysis of mammalian promoter architecture and evolution
-
Carninci P., Sandelin A., Lenhard B., Katayama S., Shimokawa K., Ponjavic J., Semple C.A., Taylor M.S., Engstrom P.G., Frith M.C., Forrest A.R., Alkema W.B., Tan S.L., Plessy C., Kodzius R., Ravasi T., Kasukawa T., Fukuda S., Kanamori-Katayama M., Kitazume Y., Kawaji H., Kai C., Nakamura M., Konno H., Nakano K., Mottagui-Tabar S., Arner P., Chesi A., Gustincich S., Persichetti F., Suzuki H., Grimmond S.M., Wells C.A., Orlando V., Wahlestedt C., Liu E.T., Harbers M., Kawai J., Bajic V.B., Hume D.A., Hayashizaki Y. Genome-wide analysis of mammalian promoter architecture and evolution. Nat. Genet. 2006, 38:626-635.
-
(2006)
Nat. Genet.
, vol.38
, pp. 626-635
-
-
Carninci, P.1
Sandelin, A.2
Lenhard, B.3
Katayama, S.4
Shimokawa, K.5
Ponjavic, J.6
Semple, C.A.7
Taylor, M.S.8
Engstrom, P.G.9
Frith, M.C.10
Forrest, A.R.11
Alkema, W.B.12
Tan, S.L.13
Plessy, C.14
Kodzius, R.15
Ravasi, T.16
Kasukawa, T.17
Fukuda, S.18
Kanamori-Katayama, M.19
Kitazume, Y.20
Kawaji, H.21
Kai, C.22
Nakamura, M.23
Konno, H.24
Nakano, K.25
Mottagui-Tabar, S.26
Arner, P.27
Chesi, A.28
Gustincich, S.29
Persichetti, F.30
Suzuki, H.31
Grimmond, S.M.32
Wells, C.A.33
Orlando, V.34
Wahlestedt, C.35
Liu, E.T.36
Harbers, M.37
Kawai, J.38
Bajic, V.B.39
Hume, D.A.40
Hayashizaki, Y.41
more..
-
7
-
-
0037007048
-
Large-scale analysis of the human and mouse transcriptomes
-
Su A.I., Cooke M.P., Ching K.A., Hakak Y., Walker J.R., Wiltshire T., Orth A.P., Vega R.G., Sapinoso L.M., Moqrich A., Patapoutian A., Hampton G.M., Schultz P.G., Hogenesch J.B. Large-scale analysis of the human and mouse transcriptomes. Proc. Natl. Acad. Sci. USA 2002, 99:4465-4470.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 4465-4470
-
-
Su, A.I.1
Cooke, M.P.2
Ching, K.A.3
Hakak, Y.4
Walker, J.R.5
Wiltshire, T.6
Orth, A.P.7
Vega, R.G.8
Sapinoso, L.M.9
Moqrich, A.10
Patapoutian, A.11
Hampton, G.M.12
Schultz, P.G.13
Hogenesch, J.B.14
-
8
-
-
11144358198
-
A gene atlas of the mouse and human protein-encoding transcriptomes
-
Su A.I., Wiltshire T., Batalov S., Lapp H., Ching K.A., Block D., Zhang J., Soden R., Hayakawa M., Kreiman G., Cooke M.P., Walker J.R., Hogenesch J.B. A gene atlas of the mouse and human protein-encoding transcriptomes. Proc. Natl. Acad. Sci. USA 2004, 101:6062-6067.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 6062-6067
-
-
Su, A.I.1
Wiltshire, T.2
Batalov, S.3
Lapp, H.4
Ching, K.A.5
Block, D.6
Zhang, J.7
Soden, R.8
Hayakawa, M.9
Kreiman, G.10
Cooke, M.P.11
Walker, J.R.12
Hogenesch, J.B.13
-
9
-
-
41849139980
-
Prediction of human disease genes by human-mouse conserved coexpression analysis
-
Ala U., Piro R.M., Grassi E., Damasco C., Silengo L., Oti M., Provero P., Di Cunto F. Prediction of human disease genes by human-mouse conserved coexpression analysis. PLoS Comput. Biol. 2008, 4:e1000043.
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Ala, U.1
Piro, R.M.2
Grassi, E.3
Damasco, C.4
Silengo, L.5
Oti, M.6
Provero, P.7
Di Cunto, F.8
-
10
-
-
62849092708
-
Function of C/EBPdelta in a regulatory circuit that discriminates between transient and persistent TLR4-induced signals
-
Litvak V., Ramsey S.A., Rust A.G., Zak D.E., Kennedy K.A., Lampano A.E., Nykter M., Shmulevich I., Aderem A. Function of C/EBPdelta in a regulatory circuit that discriminates between transient and persistent TLR4-induced signals. Nat. Immunol. 2009, 10:437-443.
-
(2009)
Nat. Immunol.
, vol.10
, pp. 437-443
-
-
Litvak, V.1
Ramsey, S.A.2
Rust, A.G.3
Zak, D.E.4
Kennedy, K.A.5
Lampano, A.E.6
Nykter, M.7
Shmulevich, I.8
Aderem, A.9
-
11
-
-
33646484899
-
Transcriptional network dynamics in macrophage activation
-
Nilsson R., Bajic V.B., Suzuki H., di Bernardo D., Bjorkegren J., Katayama S., Reid J.F., Sweet M.J., Gariboldi M., Carninci P., Hayashizaki Y., Hume D.A., Tegner J., Ravasi T. Transcriptional network dynamics in macrophage activation. Genomics 2006, 88:133-142.
-
(2006)
Genomics
, vol.88
, pp. 133-142
-
-
Nilsson, R.1
Bajic, V.B.2
Suzuki, H.3
di Bernardo, D.4
Bjorkegren, J.5
Katayama, S.6
Reid, J.F.7
Sweet, M.J.8
Gariboldi, M.9
Carninci, P.10
Hayashizaki, Y.11
Hume, D.A.12
Tegner, J.13
Ravasi, T.14
-
12
-
-
52049103600
-
Meta-analysis of microarray studies reveals a novel hematopoietic progenitor cell signature and demonstrates feasibility of inter-platform data integration
-
Sohal D., Yeatts A., Ye K., Pellagatti A., Zhou L., Pahanish P., Mo Y., Bhagat T., Mariadason J., Boultwood J., Melnick A., Greally J., Verma A. Meta-analysis of microarray studies reveals a novel hematopoietic progenitor cell signature and demonstrates feasibility of inter-platform data integration. PLoS ONE 2008, 3:e2965.
-
(2008)
PLoS ONE
, vol.3
-
-
Sohal, D.1
Yeatts, A.2
Ye, K.3
Pellagatti, A.4
Zhou, L.5
Pahanish, P.6
Mo, Y.7
Bhagat, T.8
Mariadason, J.9
Boultwood, J.10
Melnick, A.11
Greally, J.12
Verma, A.13
-
13
-
-
33746539114
-
Immune cell transcriptome datasets reveal novel leukocyte subset-specific genes and genes associated with allergic processes
-
Liu S.M., Xavier R., Good K.L., Chtanova T., Newton R., Sisavanh M., Zimmer S., Deng C., Silva D.G., Frost M.J., Tangye S.G., Rolph M.S., Mackay C.R. Immune cell transcriptome datasets reveal novel leukocyte subset-specific genes and genes associated with allergic processes. J. Allergy Clin. Immunol. 2006, 118:496-503.
-
(2006)
J. Allergy Clin. Immunol.
, vol.118
, pp. 496-503
-
-
Liu, S.M.1
Xavier, R.2
Good, K.L.3
Chtanova, T.4
Newton, R.5
Sisavanh, M.6
Zimmer, S.7
Deng, C.8
Silva, D.G.9
Frost, M.J.10
Tangye, S.G.11
Rolph, M.S.12
Mackay, C.R.13
-
14
-
-
66549083800
-
Enabling a systems biology approach to immunology: focus on innate immunity
-
Gardy J.L., Lynn D.J., Brinkman F.S., Hancock R.E. Enabling a systems biology approach to immunology: focus on innate immunity. Trends Immunol. 2009, 30:249-262.
-
(2009)
Trends Immunol.
, vol.30
, pp. 249-262
-
-
Gardy, J.L.1
Lynn, D.J.2
Brinkman, F.S.3
Hancock, R.E.4
-
15
-
-
52649097448
-
The Immunological Genome Project: networks of gene expression in immune cells
-
Heng T.S., Painter M.W. The Immunological Genome Project: networks of gene expression in immune cells. Nat. Immunol. 2008, 9:1091-1094.
-
(2008)
Nat. Immunol.
, vol.9
, pp. 1091-1094
-
-
Heng, T.S.1
Painter, M.W.2
-
16
-
-
51049113607
-
InnateDB: facilitating systems-level analyses of the mammalian innate immune response
-
Lynn D.J., Winsor G.L., Chan C., Richard N., Laird M.R., Barsky A., Gardy J.L., Roche F.M., Chan T.H., Shah N., Lo R., Naseer M., Que J., Yau M., Acab M., Tulpan D., Whiteside M.D., Chikatamarla A., Mah B., Munzner T., Hokamp K., Hancock R.E., Brinkman F.S. InnateDB: facilitating systems-level analyses of the mammalian innate immune response. Mol. Syst. Biol. 2008, 4:218.
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 218
-
-
Lynn, D.J.1
Winsor, G.L.2
Chan, C.3
Richard, N.4
Laird, M.R.5
Barsky, A.6
Gardy, J.L.7
Roche, F.M.8
Chan, T.H.9
Shah, N.10
Lo, R.11
Naseer, M.12
Que, J.13
Yau, M.14
Acab, M.15
Tulpan, D.16
Whiteside, M.D.17
Chikatamarla, A.18
Mah, B.19
Munzner, T.20
Hokamp, K.21
Hancock, R.E.22
Brinkman, F.S.23
more..
-
17
-
-
44249093277
-
Expression analysis of G Protein-Coupled Receptors in mouse macrophages
-
Lattin J.E., Schroder K., Su A.I., Walker J.R., Zhang J., Wiltshire T., Saijo K., Glass C.K., Hume D.A., Kellie S., Sweet M.J. Expression analysis of G Protein-Coupled Receptors in mouse macrophages. Immunome Res. 2008, 4:5.
-
(2008)
Immunome Res.
, vol.4
, pp. 5
-
-
Lattin, J.E.1
Schroder, K.2
Su, A.I.3
Walker, J.R.4
Zhang, J.5
Wiltshire, T.6
Saijo, K.7
Glass, C.K.8
Hume, D.A.9
Kellie, S.10
Sweet, M.J.11
-
18
-
-
35748937331
-
Construction, visualisation, and clustering of transcription networks from microarray expression data
-
Freeman T.C., Goldovsky L., Brosch M., van Dongen S., Maziere P., Grocock R.J., Freilich S., Thornton J., Enright A.J. Construction, visualisation, and clustering of transcription networks from microarray expression data. PLoS Comput. Biol. 2007, 3:2032-2042.
-
(2007)
PLoS Comput. Biol.
, vol.3
, pp. 2032-2042
-
-
Freeman, T.C.1
Goldovsky, L.2
Brosch, M.3
van Dongen, S.4
Maziere, P.5
Grocock, R.J.6
Freilich, S.7
Thornton, J.8
Enright, A.J.9
-
19
-
-
73349116606
-
Network visualization and analysis of gene expression data using BioLayout Express(3D)
-
Theocharidis A., van Dongen S., Enright A.J., Freeman T.C. Network visualization and analysis of gene expression data using BioLayout Express(3D). Nat. Protoc. 2009, 4:1535-1550.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 1535-1550
-
-
Theocharidis, A.1
van Dongen, S.2
Enright, A.J.3
Freeman, T.C.4
-
20
-
-
2542584654
-
Detection of functional DNA motifs via statistical over-representation
-
Frith M.C., Fu Y., Yu L., Chen J.F., Hansen U., Weng Z. Detection of functional DNA motifs via statistical over-representation. Nucleic Acids Res. 2004, 32:1372-1381.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1372-1381
-
-
Frith, M.C.1
Fu, Y.2
Yu, L.3
Chen, J.F.4
Hansen, U.5
Weng, Z.6
-
21
-
-
63749102693
-
Emergent genome-wide control in wildtype and genetically mutated lipopolysaccarides-stimulated macrophages
-
Tsuchiya M., Piras V., Choi S., Akira S., Tomita M., Giuliani A., Selvarajoo K. Emergent genome-wide control in wildtype and genetically mutated lipopolysaccarides-stimulated macrophages. PLoS ONE 2009, 4:e4905.
-
(2009)
PLoS ONE
, vol.4
-
-
Tsuchiya, M.1
Piras, V.2
Choi, S.3
Akira, S.4
Tomita, M.5
Giuliani, A.6
Selvarajoo, K.7
-
22
-
-
33745294108
-
G protein-coupled receptor 83 overexpression in naive CD4+ CD25- T cells leads to the induction of Foxp3+ regulatory T cells in vivo
-
Hansen W., Loser K., Westendorf A.M., Bruder D., Pfoertner S., Siewert C., Huehn J., Beissert S., Buer J. G protein-coupled receptor 83 overexpression in naive CD4+ CD25- T cells leads to the induction of Foxp3+ regulatory T cells in vivo. J. Immunol. 2006, 177:209-215.
-
(2006)
J. Immunol.
, vol.177
, pp. 209-215
-
-
Hansen, W.1
Loser, K.2
Westendorf, A.M.3
Bruder, D.4
Pfoertner, S.5
Siewert, C.6
Huehn, J.7
Beissert, S.8
Buer, J.9
-
23
-
-
70449393651
-
MafB/c-Maf deficiency enables self-renewal of differentiated functional macrophages
-
Aziz A., Soucie E., Sarrazin S., Sieweke M.H. MafB/c-Maf deficiency enables self-renewal of differentiated functional macrophages. Science 2009, 326:867-871.
-
(2009)
Science
, vol.326
, pp. 867-871
-
-
Aziz, A.1
Soucie, E.2
Sarrazin, S.3
Sieweke, M.H.4
-
24
-
-
0033198522
-
C-Maf induces monocytic differentiation and apoptosis in bipotent myeloid progenitors
-
Hegde S.P., Zhao J., Ashmun R.A., Shapiro L.H. c-Maf induces monocytic differentiation and apoptosis in bipotent myeloid progenitors. Blood 1999, 94:1578-1589.
-
(1999)
Blood
, vol.94
, pp. 1578-1589
-
-
Hegde, S.P.1
Zhao, J.2
Ashmun, R.A.3
Shapiro, L.H.4
-
25
-
-
67651001557
-
C-Maf is essential for the F4/80 expression in macrophages in vivo
-
Nakamura M., Hamada M., Hasegawa K., Kusakabe M., Suzuki H., Greaves D.R., Moriguchi T., Kudo T., Takahashi S. c-Maf is essential for the F4/80 expression in macrophages in vivo. Gene 2009, 445:66-72.
-
(2009)
Gene
, vol.445
, pp. 66-72
-
-
Nakamura, M.1
Hamada, M.2
Hasegawa, K.3
Kusakabe, M.4
Suzuki, H.5
Greaves, D.R.6
Moriguchi, T.7
Kudo, T.8
Takahashi, S.9
-
26
-
-
52949106528
-
Transcription factor E2-2 is an essential and specific regulator of plasmacytoid dendritic cell development
-
Cisse B., Caton M.L., Lehner M., Maeda T., Scheu S., Locksley R., Holmberg D., Zweier C., den Hollander N.S., Kant S.G., Holter W., Rauch A., Zhuang Y., Reizis B. Transcription factor E2-2 is an essential and specific regulator of plasmacytoid dendritic cell development. Cell 2008, 135:37-48.
-
(2008)
Cell
, vol.135
, pp. 37-48
-
-
Cisse, B.1
Caton, M.L.2
Lehner, M.3
Maeda, T.4
Scheu, S.5
Locksley, R.6
Holmberg, D.7
Zweier, C.8
den Hollander, N.S.9
Kant, S.G.10
Holter, W.11
Rauch, A.12
Zhuang, Y.13
Reizis, B.14
-
27
-
-
33744909412
-
Sampling and signaling in plasmacytoid dendritic cells: the potential roles of Siglec-H
-
Blasius A.L., Colonna M. Sampling and signaling in plasmacytoid dendritic cells: the potential roles of Siglec-H. Trends Immunol. 2006, 27:255-260.
-
(2006)
Trends Immunol.
, vol.27
, pp. 255-260
-
-
Blasius, A.L.1
Colonna, M.2
-
28
-
-
24044535104
-
The Runx1 transcription factor controls CSF-1-dependent and -independent growth and survival of macrophages
-
Himes S.R., Cronau S., Mulford C., Hume D.A. The Runx1 transcription factor controls CSF-1-dependent and -independent growth and survival of macrophages. Oncogene 2005, 24:5278-5286.
-
(2005)
Oncogene
, vol.24
, pp. 5278-5286
-
-
Himes, S.R.1
Cronau, S.2
Mulford, C.3
Hume, D.A.4
-
29
-
-
43149115856
-
PU.1 and C/EBPalpha/beta convert fibroblasts into macrophage-like cells
-
Feng R., Desbordes S.C., Xie H., Tillo E.S., Pixley F., Stanley E.R., Graf T. PU.1 and C/EBPalpha/beta convert fibroblasts into macrophage-like cells. Proc. Natl. Acad. Sci. USA 2008, 105:6057-6062.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 6057-6062
-
-
Feng, R.1
Desbordes, S.C.2
Xie, H.3
Tillo, E.S.4
Pixley, F.5
Stanley, E.R.6
Graf, T.7
-
30
-
-
45549096156
-
The Ewing sarcoma protein (EWS) binds directly to the proximal elements of the macrophage-specific promoter of the CSF-1 receptor (csf1r) gene
-
Hume D.A., Sasmono T., Himes S.R., Sharma S.M., Bronisz A., Constantin M., Ostrowski M.C., Ross I.L. The Ewing sarcoma protein (EWS) binds directly to the proximal elements of the macrophage-specific promoter of the CSF-1 receptor (csf1r) gene. J. Immunol. 2008, 180:6733-6742.
-
(2008)
J. Immunol.
, vol.180
, pp. 6733-6742
-
-
Hume, D.A.1
Sasmono, T.2
Himes, S.R.3
Sharma, S.M.4
Bronisz, A.5
Constantin, M.6
Ostrowski, M.C.7
Ross, I.L.8
-
31
-
-
0032549567
-
Interaction between PU.1 and another Ets family transcription factor promotes macrophage-specific Basal transcription initiation
-
Ross I.L., Yue X., Ostrowski M.C., Hume D.A. Interaction between PU.1 and another Ets family transcription factor promotes macrophage-specific Basal transcription initiation. J. Biol. Chem. 1998, 273:6662-6669.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 6662-6669
-
-
Ross, I.L.1
Yue, X.2
Ostrowski, M.C.3
Hume, D.A.4
-
32
-
-
52949087576
-
A genomewide functional network for the laboratory mouse
-
Guan Y., Myers C.L., Lu R., Lemischka I.R., Bult C.J., Troyanskaya O.G. A genomewide functional network for the laboratory mouse. PLoS Comput. Biol. 2008, 4:e1000165.
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Guan, Y.1
Myers, C.L.2
Lu, R.3
Lemischka, I.R.4
Bult, C.J.5
Troyanskaya, O.G.6
-
33
-
-
49049118852
-
Identification of genes regulated by nanog which is involved in ES cells pluripotency and early differentiation
-
Liu N., Feng X., Fang Z., Ma F., Lu S., Lu M., Han Z. Identification of genes regulated by nanog which is involved in ES cells pluripotency and early differentiation. J. Cell. Biochem. 2008, 104:2348-2362.
-
(2008)
J. Cell. Biochem.
, vol.104
, pp. 2348-2362
-
-
Liu, N.1
Feng, X.2
Fang, Z.3
Ma, F.4
Lu, S.5
Lu, M.6
Han, Z.7
-
34
-
-
34249908901
-
In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state
-
Wernig M., Meissner A., Foreman R., Brambrink T., Ku M., Hochedlinger K., Bernstein B.E., Jaenisch R. In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state. Nature 2007, 448:318-324.
-
(2007)
Nature
, vol.448
, pp. 318-324
-
-
Wernig, M.1
Meissner, A.2
Foreman, R.3
Brambrink, T.4
Ku, M.5
Hochedlinger, K.6
Bernstein, B.E.7
Jaenisch, R.8
-
35
-
-
0037130961
-
A stem cell molecular signature
-
Ivanova N.B., Dimos J.T., Schaniel C., Hackney J.A., Moore K.A., Lemischka I.R. A stem cell molecular signature. Science 2002, 298:601-604.
-
(2002)
Science
, vol.298
, pp. 601-604
-
-
Ivanova, N.B.1
Dimos, J.T.2
Schaniel, C.3
Hackney, J.A.4
Moore, K.A.5
Lemischka, I.R.6
-
36
-
-
0242367242
-
Comment on "'Stemness': transcriptional profiling of embryonic and adult stem cells" and "a stem cell molecular signature"
-
(author reply 393)
-
Fortunel N.O., Otu H.H., Ng H.H., Chen J., Mu X., Chevassut T., Li X., Joseph M., Bailey C., Hatzfeld J.A., Hatzfeld A., Usta F., Vega V.B., Long P.M., Libermann T.A., Lim B. Comment on "'Stemness': transcriptional profiling of embryonic and adult stem cells" and "a stem cell molecular signature". Science 2003, 302:393. (author reply 393).
-
(2003)
Science
, vol.302
, pp. 393
-
-
Fortunel, N.O.1
Otu, H.H.2
Ng, H.H.3
Chen, J.4
Mu, X.5
Chevassut, T.6
Li, X.7
Joseph, M.8
Bailey, C.9
Hatzfeld, J.A.10
Hatzfeld, A.11
Usta, F.12
Vega, V.B.13
Long, P.M.14
Libermann, T.A.15
Lim, B.16
-
37
-
-
65349147139
-
FLT3 receptor and ligand are dispensable for maintenance and posttransplantation expansion of mouse hematopoietic stem cells
-
Buza-Vidas N., Cheng M., Duarte S., Charoudeh H.N., Jacobsen S.E., Sitnicka E. FLT3 receptor and ligand are dispensable for maintenance and posttransplantation expansion of mouse hematopoietic stem cells. Blood 2009, 113:3453-3460.
-
(2009)
Blood
, vol.113
, pp. 3453-3460
-
-
Buza-Vidas, N.1
Cheng, M.2
Duarte, S.3
Charoudeh, H.N.4
Jacobsen, S.E.5
Sitnicka, E.6
-
38
-
-
49049098143
-
Osteal tissue macrophages are intercalated throughout human and mouse bone lining tissues and regulate osteoblast function in vitro and in vivo
-
Chang M.K., Raggatt L.J., Alexander K.A., Kuliwaba J.S., Fazzalari N.L., Schroder K., Maylin E.R., Ripoll V.M., Hume D.A., Pettit A.R. Osteal tissue macrophages are intercalated throughout human and mouse bone lining tissues and regulate osteoblast function in vitro and in vivo. J. Immunol. 2008, 181:1232-1244.
-
(2008)
J. Immunol.
, vol.181
, pp. 1232-1244
-
-
Chang, M.K.1
Raggatt, L.J.2
Alexander, K.A.3
Kuliwaba, J.S.4
Fazzalari, N.L.5
Schroder, K.6
Maylin, E.R.7
Ripoll, V.M.8
Hume, D.A.9
Pettit, A.R.10
-
39
-
-
24644487312
-
TGF-beta and epithelial-to-mesenchymal transitions
-
Zavadil J., Bottinger E.P. TGF-beta and epithelial-to-mesenchymal transitions. Oncogene 2005, 24:5764-5774.
-
(2005)
Oncogene
, vol.24
, pp. 5764-5774
-
-
Zavadil, J.1
Bottinger, E.P.2
-
40
-
-
70249147186
-
Experimental and bioinformatic characterisation of the promoter region of the Marfan syndrome gene, FBN1
-
Summers K.M., Bokil N.J., Baisden J.M., West M.J., Sweet M.J., Raggatt L.J., Hume D.A. Experimental and bioinformatic characterisation of the promoter region of the Marfan syndrome gene, FBN1. Genomics 2009, 94:233-240.
-
(2009)
Genomics
, vol.94
, pp. 233-240
-
-
Summers, K.M.1
Bokil, N.J.2
Baisden, J.M.3
West, M.J.4
Sweet, M.J.5
Raggatt, L.J.6
Hume, D.A.7
-
41
-
-
67749122634
-
A gene network regulating lysosomal biogenesis and function
-
Sardiello M., Palmieri M., di Ronza A., Medina D.L., Valenza M., Gennarino V.A., Di Malta C., Donaudy F., Embrione V., Polishchuk R.S., Banfi S., Parenti G., Cattaneo E., Ballabio A. A gene network regulating lysosomal biogenesis and function. Science 2009, 325:473-477.
-
(2009)
Science
, vol.325
, pp. 473-477
-
-
Sardiello, M.1
Palmieri, M.2
di Ronza, A.3
Medina, D.L.4
Valenza, M.5
Gennarino, V.A.6
Di Malta, C.7
Donaudy, F.8
Embrione, V.9
Polishchuk, R.S.10
Banfi, S.11
Parenti, G.12
Cattaneo, E.13
Ballabio, A.14
-
42
-
-
0033082496
-
TFEC is a macrophage-restricted member of the microphthalmia-TFE subfamily of basic helix-loop-helix leucine zipper transcription factors
-
Rehli M., Lichanska A., Cassady A.I., Ostrowski M.C., Hume D.A. TFEC is a macrophage-restricted member of the microphthalmia-TFE subfamily of basic helix-loop-helix leucine zipper transcription factors. J. Immunol. 1999, 162:1559-1565.
-
(1999)
J. Immunol.
, vol.162
, pp. 1559-1565
-
-
Rehli, M.1
Lichanska, A.2
Cassady, A.I.3
Ostrowski, M.C.4
Hume, D.A.5
-
43
-
-
0036486769
-
The microphthalmia transcription factor and the related helix-loop-helix zipper factors TFE-3 and TFE-C collaborate to activate the tartrate-resistant acid phosphatase promoter
-
Mansky K.C., Sulzbacher S., Purdom G., Nelsen L., Hume D.A., Rehli M., Ostrowski M.C. The microphthalmia transcription factor and the related helix-loop-helix zipper factors TFE-3 and TFE-C collaborate to activate the tartrate-resistant acid phosphatase promoter. J. Leukoc. Biol. 2002, 71:304-310.
-
(2002)
J. Leukoc. Biol.
, vol.71
, pp. 304-310
-
-
Mansky, K.C.1
Sulzbacher, S.2
Purdom, G.3
Nelsen, L.4
Hume, D.A.5
Rehli, M.6
Ostrowski, M.C.7
-
44
-
-
0034171393
-
Mi-transcription factor as a regulator of mast cell differentiation
-
Kitamura Y., Morii E., Jippo T., Ito A. mi-transcription factor as a regulator of mast cell differentiation. Int. J. Hematol. 2000, 71:197-202.
-
(2000)
Int. J. Hematol.
, vol.71
, pp. 197-202
-
-
Kitamura, Y.1
Morii, E.2
Jippo, T.3
Ito, A.4
-
45
-
-
33747882661
-
MITF: master regulator of melanocyte development and melanoma oncogene
-
Levy C., Khaled M., Fisher D.E. MITF: master regulator of melanocyte development and melanoma oncogene. Trends Mol. Med. 2006, 12:406-414.
-
(2006)
Trends Mol. Med.
, vol.12
, pp. 406-414
-
-
Levy, C.1
Khaled, M.2
Fisher, D.E.3
-
46
-
-
0035965217
-
Genetic and physical interactions between Microphthalmia transcription factor and PU.1 are necessary for osteoclast gene expression and differentiation
-
Luchin A., Suchting S., Merson T., Rosol T.J., Hume D.A., Cassady A.I., Ostrowski M.C. Genetic and physical interactions between Microphthalmia transcription factor and PU.1 are necessary for osteoclast gene expression and differentiation. J. Biol. Chem. 2001, 276:36703-36710.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 36703-36710
-
-
Luchin, A.1
Suchting, S.2
Merson, T.3
Rosol, T.J.4
Hume, D.A.5
Cassady, A.I.6
Ostrowski, M.C.7
-
48
-
-
34248226374
-
Gpnmb is induced in macrophages by IFN-gamma and lipopolysaccharide and acts as a feedback regulator of proinflammatory responses
-
Ripoll V.M., Irvine K.M., Ravasi T., Sweet M.J., Hume D.A. Gpnmb is induced in macrophages by IFN-gamma and lipopolysaccharide and acts as a feedback regulator of proinflammatory responses. J. Immunol. 2007, 178:6557-6566.
-
(2007)
J. Immunol.
, vol.178
, pp. 6557-6566
-
-
Ripoll, V.M.1
Irvine, K.M.2
Ravasi, T.3
Sweet, M.J.4
Hume, D.A.5
-
49
-
-
41249095532
-
Microphthalmia transcription factor regulates the expression of the novel osteoclast factor GPNMB
-
Ripoll V.M., Meadows N.A., Raggatt L.J., Chang M.K., Pettit A.R., Cassady A.I., Hume D.A. Microphthalmia transcription factor regulates the expression of the novel osteoclast factor GPNMB. Gene 2008, 413:32-41.
-
(2008)
Gene
, vol.413
, pp. 32-41
-
-
Ripoll, V.M.1
Meadows, N.A.2
Raggatt, L.J.3
Chang, M.K.4
Pettit, A.R.5
Cassady, A.I.6
Hume, D.A.7
-
50
-
-
44449175532
-
Comparative analysis of transcriptional profiling of CD3+, CD4+ and CD8+ T cells identifies novel immune response players in T-cell activation
-
Wang M., Windgassen D., Papoutsakis E.T. Comparative analysis of transcriptional profiling of CD3+, CD4+ and CD8+ T cells identifies novel immune response players in T-cell activation. BMC Genomics 2008, 9:225.
-
(2008)
BMC Genomics
, vol.9
, pp. 225
-
-
Wang, M.1
Windgassen, D.2
Papoutsakis, E.T.3
-
51
-
-
58749083404
-
Macrophages as APC and the dendritic cell myth
-
Hume D.A. Macrophages as APC and the dendritic cell myth. J. Immunol. 2008, 181:5829-5835.
-
(2008)
J. Immunol.
, vol.181
, pp. 5829-5835
-
-
Hume, D.A.1
-
53
-
-
0036720398
-
The roles of FLT3 in hematopoiesis and leukemia
-
Gilliland D.G., Griffin J.D. The roles of FLT3 in hematopoiesis and leukemia. Blood 2002, 100:1532-1542.
-
(2002)
Blood
, vol.100
, pp. 1532-1542
-
-
Gilliland, D.G.1
Griffin, J.D.2
-
54
-
-
34250159927
-
Development of dendritic-cell lineages
-
Wu L., Liu Y.J. Development of dendritic-cell lineages. Immunity 2007, 26:741-750.
-
(2007)
Immunity
, vol.26
, pp. 741-750
-
-
Wu, L.1
Liu, Y.J.2
-
55
-
-
22544455619
-
The colony-stimulating factor 1 receptor is expressed on dendritic cells during differentiation and regulates their expansion
-
MacDonald K.P., Rowe V., Bofinger H.M., Thomas R., Sasmono T., Hume D.A., Hill G.R. The colony-stimulating factor 1 receptor is expressed on dendritic cells during differentiation and regulates their expansion. J. Immunol. 2005, 175:1399-1405.
-
(2005)
J. Immunol.
, vol.175
, pp. 1399-1405
-
-
MacDonald, K.P.1
Rowe, V.2
Bofinger, H.M.3
Thomas, R.4
Sasmono, T.5
Hume, D.A.6
Hill, G.R.7
-
56
-
-
34347405754
-
Mouse neutrophilic granulocytes express mRNA encoding the macrophage colony-stimulating factor receptor (CSF-1R) as well as many other macrophage-specific transcripts and can transdifferentiate into macrophages in vitro in response to CSF-1
-
Sasmono R.T., Ehrnsperger A., Cronau S.L., Ravasi T., Kandane R., Hickey M.J., Cook A.D., Himes S.R., Hamilton J.A., Hume D.A. Mouse neutrophilic granulocytes express mRNA encoding the macrophage colony-stimulating factor receptor (CSF-1R) as well as many other macrophage-specific transcripts and can transdifferentiate into macrophages in vitro in response to CSF-1. J. Leukoc. Biol. 2007, 82:111-123.
-
(2007)
J. Leukoc. Biol.
, vol.82
, pp. 111-123
-
-
Sasmono, R.T.1
Ehrnsperger, A.2
Cronau, S.L.3
Ravasi, T.4
Kandane, R.5
Hickey, M.J.6
Cook, A.D.7
Himes, S.R.8
Hamilton, J.A.9
Hume, D.A.10
-
57
-
-
38449085888
-
The transcriptional regulation of the Colony-Stimulating Factor 1 Receptor (csf1r) gene during hematopoiesis
-
Bonifer C., Hume D.A. The transcriptional regulation of the Colony-Stimulating Factor 1 Receptor (csf1r) gene during hematopoiesis. Front. Biosci. 2008, 13:549-560.
-
(2008)
Front. Biosci.
, vol.13
, pp. 549-560
-
-
Bonifer, C.1
Hume, D.A.2
-
58
-
-
0037468892
-
Multiple tissue-specific promoters control expression of the murine tartrate-resistant acid phosphatase gene
-
Walsh N.C., Cahill M., Carninci P., Kawai J., Okazaki Y., Hayashizaki Y., Hume D.A., Cassady A.I. Multiple tissue-specific promoters control expression of the murine tartrate-resistant acid phosphatase gene. Gene 2003, 307:111-123.
-
(2003)
Gene
, vol.307
, pp. 111-123
-
-
Walsh, N.C.1
Cahill, M.2
Carninci, P.3
Kawai, J.4
Okazaki, Y.5
Hayashizaki, Y.6
Hume, D.A.7
Cassady, A.I.8
-
59
-
-
58149290026
-
Our evolving knowledge of the transcriptional landscape
-
Hume D.A. Our evolving knowledge of the transcriptional landscape. Mamm. Genome 2008, 19:663-666.
-
(2008)
Mamm. Genome
, vol.19
, pp. 663-666
-
-
Hume, D.A.1
-
60
-
-
65149083962
-
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
-
Suzuki H., Forrest A.R., van Nimwegen E., Daub C.O., Balwierz P.J., Irvine K.M., Lassmann T., Ravasi T., Hasegawa Y., de Hoon M.J., Katayama S., Schroder K., Carninci P., Tomaru Y., Kanamori-Katayama M., Kubosaki A., Akalin A., Ando Y., Arner E., Asada M., Asahara H., Bailey T., Bajic V.B., Bauer D., Beckhouse A.G., Bertin N., Bjorkegren J., Brombacher F., Bulger E., Chalk A.M., Chiba J., Cloonan N., Dawe A., Dostie J., Engstrom P.G., Essack M., Faulkner G.J., Fink J.L., Fredman D., Fujimori K., Furuno M., Gojobori T., Gough J., Grimmond S.M., Gustafsson M., Hashimoto M., Hashimoto T., Hatakeyama M., Heinzel S., Hide W., Hofmann O., Hornquist M., Huminiecki L., Ikeo K., Imamoto N., Inoue S., Inoue Y., Ishihara R., Iwayanagi T., Jacobsen A., Kaur M., Kawaji H., Kerr M.C., Kimura R., Kimura S., Kimura Y., Kitano H., Koga H., Kojima T., Kondo S., Konno T., Krogh A., Kruger A., Kumar A., Lenhard B., Lennartsson A., Lindow M., Lizio M., Macpherson C., Maeda N., Maher C.A., Maqungo M., Mar J., Matigian N.A., Matsuda H., Mattick J.S., Meier S., Miyamoto S., Miyamoto-Sato E., Nakabayashi K., Nakachi Y., Nakano M., Nygaard S., Okayama T., Okazaki Y., Okuda-Yabukami H., Orlando V., Otomo J., Pachkov M., Petrovsky N., et al. The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nat. Genet. 2009, 41:553-562.
-
(2009)
Nat. Genet.
, vol.41
, pp. 553-562
-
-
Suzuki, H.1
Forrest, A.R.2
van Nimwegen, E.3
Daub, C.O.4
Balwierz, P.J.5
Irvine, K.M.6
Lassmann, T.7
Ravasi, T.8
Hasegawa, Y.9
de Hoon, M.J.10
Katayama, S.11
Schroder, K.12
Carninci, P.13
Tomaru, Y.14
Kanamori-Katayama, M.15
Kubosaki, A.16
Akalin, A.17
Ando, Y.18
Arner, E.19
Asada, M.20
Asahara, H.21
Bailey, T.22
Bajic, V.B.23
Bauer, D.24
Beckhouse, A.G.25
Bertin, N.26
Bjorkegren, J.27
Brombacher, F.28
Bulger, E.29
Chalk, A.M.30
Chiba, J.31
Cloonan, N.32
Dawe, A.33
Dostie, J.34
Engstrom, P.G.35
Essack, M.36
Faulkner, G.J.37
Fink, J.L.38
Fredman, D.39
Fujimori, K.40
Furuno, M.41
Gojobori, T.42
Gough, J.43
Grimmond, S.M.44
Gustafsson, M.45
Hashimoto, M.46
Hashimoto, T.47
Hatakeyama, M.48
Heinzel, S.49
Hide, W.50
Hofmann, O.51
Hornquist, M.52
Huminiecki, L.53
Ikeo, K.54
Imamoto, N.55
Inoue, S.56
Inoue, Y.57
Ishihara, R.58
Iwayanagi, T.59
Jacobsen, A.60
Kaur, M.61
Kawaji, H.62
Kerr, M.C.63
Kimura, R.64
Kimura, S.65
Kimura, Y.66
Kitano, H.67
Koga, H.68
Kojima, T.69
Kondo, S.70
Konno, T.71
Krogh, A.72
Kruger, A.73
Kumar, A.74
Lenhard, B.75
Lennartsson, A.76
Lindow, M.77
Lizio, M.78
Macpherson, C.79
Maeda, N.80
Maher, C.A.81
Maqungo, M.82
Mar, J.83
Matigian, N.A.84
Matsuda, H.85
Mattick, J.S.86
Meier, S.87
Miyamoto, S.88
Miyamoto-Sato, E.89
Nakabayashi, K.90
Nakachi, Y.91
Nakano, M.92
Nygaard, S.93
Okayama, T.94
Okazaki, Y.95
Okuda-Yabukami, H.96
Orlando, V.97
Otomo, J.98
Pachkov, M.99
more..
-
61
-
-
33751261643
-
Genetic reclassification of histologic grade delineates new clinical subtypes of breast cancer
-
Ivshina A.V., George J., Senko O., Mow B., Putti T.C., Smeds J., Lindahl T., Pawitan Y., Hall P., Nordgren H., Wong J.E., Liu E.T., Bergh J., Kuznetsov V.A., Miller L.D. Genetic reclassification of histologic grade delineates new clinical subtypes of breast cancer. Cancer Res. 2006, 66:10292-10301.
-
(2006)
Cancer Res.
, vol.66
, pp. 10292-10301
-
-
Ivshina, A.V.1
George, J.2
Senko, O.3
Mow, B.4
Putti, T.C.5
Smeds, J.6
Lindahl, T.7
Pawitan, Y.8
Hall, P.9
Nordgren, H.10
Wong, J.E.11
Liu, E.T.12
Bergh, J.13
Kuznetsov, V.A.14
Miller, L.D.15
-
62
-
-
34447645515
-
Characterisation and trophic functions of murine embryonic macrophages based upon the use of a Csf1r-EGFP transgene reporter
-
Rae F., Woods K., Sasmono T., Campanale N., Taylor D., Ovchinnikov D.A., Grimmond S.M., Hume D.A., Ricardo S.D., Little M.H. Characterisation and trophic functions of murine embryonic macrophages based upon the use of a Csf1r-EGFP transgene reporter. Dev. Biol. 2007, 308:232-246.
-
(2007)
Dev. Biol.
, vol.308
, pp. 232-246
-
-
Rae, F.1
Woods, K.2
Sasmono, T.3
Campanale, N.4
Taylor, D.5
Ovchinnikov, D.A.6
Grimmond, S.M.7
Hume, D.A.8
Ricardo, S.D.9
Little, M.H.10
-
63
-
-
27644453166
-
Microarray analyses of gene expression during chondrocyte differentiation identifies novel regulators of hypertrophy
-
James C.G., Appleton C.T., Ulici V., Underhill T.M., Beier F. Microarray analyses of gene expression during chondrocyte differentiation identifies novel regulators of hypertrophy. Mol. Biol. Cell 2005, 16:5316-5333.
-
(2005)
Mol. Biol. Cell
, vol.16
, pp. 5316-5333
-
-
James, C.G.1
Appleton, C.T.2
Ulici, V.3
Underhill, T.M.4
Beier, F.5
|