-
1
-
-
32944464648
-
Pathogen recognition and innate immunity
-
Akira S, Uematsu S, Takeuchi O (2006) Pathogen recognition and innate immunity. Cell 124: 783-801.
-
(2006)
Cell
, vol.124
, pp. 783-801
-
-
Akira, S.1
Uematsu, S.2
Takeuchi, O.3
-
2
-
-
10644262982
-
Plasmacytoid dendritic cells: Linking innate and adaptive immunity
-
McKenna K, Beignon AS, Bhardwaj N (2005) Plasmacytoid dendritic cells: linking innate and adaptive immunity. J Virol 79: 17-27.
-
(2005)
J Virol
, vol.79
, pp. 17-27
-
-
McKenna, K.1
Beignon, A.S.2
Bhardwaj, N.3
-
3
-
-
34447505084
-
Toll-like receptors and Type I interferons
-
Uematsu S, Akira S (2007) Toll-like receptors and Type I interferons. J Biol Chem 282: 15319-15323.
-
(2007)
J Biol Chem
, vol.282
, pp. 15319-15323
-
-
Uematsu, S.1
Akira, S.2
-
4
-
-
0034886143
-
Toll-like receptors: Critical proteins linking innate and acquired immunity
-
Akira S, Takeda K, Kaisho T (2001) Toll-like receptors: critical proteins linking innate and acquired immunity. Nat Immunol 2: 675-680.
-
(2001)
Nat Immunol
, vol.2
, pp. 675-680
-
-
Akira, S.1
Takeda, K.2
Kaisho, T.3
-
5
-
-
32944462309
-
Anti-immunology: Evasion of the host immune system by bacterial and viral pathogens
-
Finlay BB, McFadden G (2006) Anti-immunology: evasion of the host immune system by bacterial and viral pathogens. Cell 124: 767-782.
-
(2006)
Cell
, vol.124
, pp. 767-782
-
-
Finlay, B.B.1
McFadden, G.2
-
6
-
-
33745679123
-
Targeting signal transduction as a strategy to treat inflammatory diseases
-
O'Neill LA (2006) Targeting signal transduction as a strategy to treat inflammatory diseases. Nat Rev Drug Discov 5: 549-563.
-
(2006)
Nat Rev Drug Discov
, vol.5
, pp. 549-563
-
-
O'Neill, L.A.1
-
7
-
-
50249168819
-
Toll-like receptor modulation in head and neck cancer
-
Pries R, Wulff S, Wollenberg B (2008) Toll-like receptor modulation in head and neck cancer. Crit Rev Immunol 28: 201-213.
-
(2008)
Crit Rev Immunol
, vol.28
, pp. 201-213
-
-
Pries, R.1
Wulff, S.2
Wollenberg, B.3
-
8
-
-
5444254408
-
Toll-like receptors in the pathogenesis of human disease
-
Cook DN, Pisetsky DS, Schwartz DA (2004) Toll-like receptors in the pathogenesis of human disease. Nat Immunol 10: 975-979.
-
(2004)
Nat Immunol
, vol.10
, pp. 975-979
-
-
Cook, D.N.1
Pisetsky, D.S.2
Schwartz, D.A.3
-
9
-
-
19344372271
-
Systems biology: Its practice and challenges
-
Aderem A (2005) Systems biology: its practice and challenges. Cell 121: 511-513.
-
(2005)
Cell
, vol.121
, pp. 511-513
-
-
Aderem, A.1
-
10
-
-
13444257582
-
Regulation of lipopolysaccharide-inducible genes by MyD88 and Toll/IL-1 domain containing adaptor inducing IFN-beta
-
Hirotani T, Yamamoto M, Kumagai Y, Uematsu S, Kawase I, et al. (2005) Regulation of lipopolysaccharide-inducible genes by MyD88 and Toll/IL-1 domain containing adaptor inducing IFN-beta. Biochem Biophys Res Commun 328: 383-392.
-
(2005)
Biochem Biophys Res Commun
, vol.328
, pp. 383-392
-
-
Hirotani, T.1
Yamamoto, M.2
Kumagai, Y.3
Uematsu, S.4
Kawase, I.5
-
11
-
-
34548844720
-
Toll-like receptor signal transduction
-
Krishnan J, Selvarajoo K, Tsuchiya M, Lee G, Choi S (2007) Toll-like receptor signal transduction. Exp Mol Med 39: 421-438.
-
(2007)
Exp Mol Med
, vol.39
, pp. 421-438
-
-
Krishnan, J.1
Selvarajoo, K.2
Tsuchiya, M.3
Lee, G.4
Choi, S.5
-
12
-
-
33646484899
-
Transcriptional network dynamics in macrophage activation
-
Nilsson R, Bajic VB, Suzuki H, di Bernardo D, Björkegren J, et al. (2006) Transcriptional network dynamics in macrophage activation. Genomics 88: 133-142.
-
(2006)
Genomics
, vol.88
, pp. 133-142
-
-
Nilsson, R.1
Bajic, V.B.2
Suzuki, H.3
di Bernardo, D.4
Björkegren, J.5
-
13
-
-
39749192575
-
Self-organization in cell biology: A brief history
-
Karsenti E (2008) Self-organization in cell biology: a brief history. Nat Rev Mol Cell Biol 9: 255-262.
-
(2008)
Nat Rev Mol Cell Biol
, vol.9
, pp. 255-262
-
-
Karsenti, E.1
-
14
-
-
0742305866
-
Network Biology: Understanding the cell's functional organization
-
Barabási AL, Oltvai ZN (2004) Network Biology: Understanding the cell's functional organization. Nat Rev Genet 5: 101-113.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 101-113
-
-
Barabási, A.L.1
Oltvai, Z.N.2
-
15
-
-
12144261863
-
Self-organization vs Watchmaker: Stochastic gene expression and cell differentiation
-
Kurakin A (2005) Self-organization vs Watchmaker: stochastic gene expression and cell differentiation. Dev Genes Evol 215: 46-52.
-
(2005)
Dev Genes Evol
, vol.215
, pp. 46-52
-
-
Kurakin, A.1
-
16
-
-
18144408736
-
Cell Fates as High-Dimensional Attractor States of a Complex Gene Regulatory Networks
-
Huang S, Eichler G, Bar-Yan Y, Ingber DE (2005) Cell Fates as High-Dimensional Attractor States of a Complex Gene Regulatory Networks. Phys Rev Lett 94: 12870-12874.
-
(2005)
Phys Rev Lett
, vol.94
, pp. 12870-12874
-
-
Huang, S.1
Eichler, G.2
Bar-Yan, Y.3
Ingber, D.E.4
-
17
-
-
0037442317
-
The topology of the transcription regulatory network in the yeast, Saccharomyces cerevisiae
-
Farkas I, Jeong H, Vicsek T, Barabasi AL, Oltvai ZN (2003) The topology of the transcription regulatory network in the yeast, Saccharomyces cerevisiae. Physica A 318: 601-612.
-
(2003)
Physica A
, vol.318
, pp. 601-612
-
-
Farkas, I.1
Jeong, H.2
Vicsek, T.3
Barabasi, A.L.4
Oltvai, Z.N.5
-
19
-
-
33748491517
-
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
-
Shi L, Reid LH, Jones WD, Shippy R, Warrington JA, et al. (2006) The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nat Biotech 24: 1151-1161.
-
(2006)
Nat Biotech
, vol.24
, pp. 1151-1161
-
-
Shi, L.1
Reid, L.H.2
Jones, W.D.3
Shippy, R.4
Warrington, J.A.5
-
20
-
-
44349162752
-
Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
-
Chang H, Hemberg M, Barahona M, Ingber DE, Huang S (2008) Transcriptome-wide noise controls lineage choice in mammalian progenitor cells. Nature 453: 544-548.
-
(2008)
Nature
, vol.453
, pp. 544-548
-
-
Chang, H.1
Hemberg, M.2
Barahona, M.3
Ingber, D.E.4
Huang, S.5
-
21
-
-
0033166472
-
Unresponsiveness of MyD88-deficient mice to endotoxin
-
Kawai T, Adachi O, Ogawa T, Takeda K, Akira S (1999) Unresponsiveness of MyD88-deficient mice to endotoxin. Immunity 11: 115-122.
-
(1999)
Immunity
, vol.11
, pp. 115-122
-
-
Kawai, T.1
Adachi, O.2
Ogawa, T.3
Takeda, K.4
Akira, S.5
-
22
-
-
0036578644
-
GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways
-
Dahlquist KD, Salomonis N, Vranizan K, Lawlor SC, Conklin BR (2002) GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways. Nat Genet 31: 19-20.
-
(2002)
Nat Genet
, vol.31
, pp. 19-20
-
-
Dahlquist, K.D.1
Salomonis, N.2
Vranizan, K.3
Lawlor, S.C.4
Conklin, B.R.5
-
23
-
-
19944362471
-
The induction of macrophage gene expression by LPS predominantly utilizes Myd88-independent signaling cascades
-
Björkbacka H, Fitzgerald KA, Huet F, Li X, Gregory JA, et al. (2004) The induction of macrophage gene expression by LPS predominantly utilizes Myd88-independent signaling cascades. Physiol Genomics 19: 319-330.
-
(2004)
Physiol Genomics
, vol.19
, pp. 319-330
-
-
Björkbacka, H.1
Fitzgerald, K.A.2
Huet, F.3
Li, X.4
Gregory, J.A.5
-
24
-
-
0043176281
-
Role of adaptor TRIF in the MyD88-independent toll-like receptor signaling pathway
-
Yamamoto M, Sato S, Hemmi H, Hoshino K, Kaisho T, et al. (2003) Role of adaptor TRIF in the MyD88-independent toll-like receptor signaling pathway. Science 301: 640-643.
-
(2003)
Science
, vol.301
, pp. 640-643
-
-
Yamamoto, M.1
Sato, S.2
Hemmi, H.3
Hoshino, K.4
Kaisho, T.5
-
25
-
-
33846809150
-
Cooperation between MyD88 and TRIF pathways in TLR synergy via IRF5 activation
-
Ouyang X, Negishi H, Takeda R, Fujita Y, Taniguchi T, et al. (2007) Cooperation between MyD88 and TRIF pathways in TLR synergy via IRF5 activation. Biochem Biophys Res Commun 354: 1045-1051.
-
(2007)
Biochem Biophys Res Commun
, vol.354
, pp. 1045-1051
-
-
Ouyang, X.1
Negishi, H.2
Takeda, R.3
Fujita, Y.4
Taniguchi, T.5
-
26
-
-
63749112446
-
-
Selvarajoo K (2008) Decoding the Signaling Mechanism of Toll-Like Receptor 4 Pathways in Wild Type and Knockouts. In: Ghosh S, Arjunan S, Dhar P, Tomita M, eds. E-Cell System - Basic Concepts and Applications. New York: Landes Bioscience and Springer Science+Business Media, In press.
-
Selvarajoo K (2008) Decoding the Signaling Mechanism of Toll-Like Receptor 4 Pathways in Wild Type and Knockouts. In: Ghosh S, Arjunan S, Dhar P, Tomita M, eds. E-Cell System - Basic Concepts and Applications. New York: Landes Bioscience and Springer Science+Business Media, In press.
-
-
-
-
27
-
-
59449091251
-
Local and Global responses in complex gene regulation networks
-
Tsuchiya M, Selvarajoo K, Piras V, Tomita M, Giuliani A (2008) Local and Global responses in complex gene regulation networks. Physica A 388: 1738-1746.
-
(2008)
Physica A
, vol.388
, pp. 1738-1746
-
-
Tsuchiya, M.1
Selvarajoo, K.2
Piras, V.3
Tomita, M.4
Giuliani, A.5
-
28
-
-
38049148026
-
DAVID Knowledgebase: A gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis
-
Sherman BT, Huang da W, Tan Q, Guo Y, Bour S, et al. (2007) DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis. BMC Bioinformatics 8: 426.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 426
-
-
Sherman, B.T.1
Huang da, W.2
Tan, Q.3
Guo, Y.4
Bour, S.5
-
29
-
-
55349098506
-
-
PLoS
-
Selvarajoo K, Takada Y, Gohda J, Helmy M, Akira S (2008) Signaling flux redistribution at toll-like receptor pathway junctions. PLoS ONE 3: e3430.
-
(2008)
Signaling flux redistribution at toll-like receptor pathway junctions
, vol.ONE 3
-
-
Selvarajoo, K.1
Takada, Y.2
Gohda, J.3
Helmy, M.4
Akira, S.5
-
30
-
-
42649096299
-
Collective behavior in gene regulation: The cell is an oscillator, the cell cycle a developmental process
-
Klevecz R, Li C, Marcus I, Frankel P (2008) Collective behavior in gene regulation: The cell is an oscillator, the cell cycle a developmental process. FEBS J 275: 2372-2384.
-
(2008)
FEBS J
, vol.275
, pp. 2372-2384
-
-
Klevecz, R.1
Li, C.2
Marcus, I.3
Frankel, P.4
-
31
-
-
34248993889
-
Gene expression waves: Cell cycle independent collective dynamics in cultured cells
-
Tsuchiya M, Wong ST, Yeo ZX, Colosimo A, Palumbo MC, et al. (2007) Gene expression waves: cell cycle independent collective dynamics in cultured cells. FEBS J 274: 2874-2886.
-
(2007)
FEBS J
, vol.274
, pp. 2874-2886
-
-
Tsuchiya, M.1
Wong, S.T.2
Yeo, Z.X.3
Colosimo, A.4
Palumbo, M.C.5
-
33
-
-
56749102636
-
Regulatory activity revealed by dynamic correlations in gene expression noise
-
Dunlop MJ, Cox RS 3rd, Levine JH, Murray RM, Elowitz MB (2008) Regulatory activity revealed by dynamic correlations in gene expression noise. Nat Genet 40: 1493-1498.
-
(2008)
Nat Genet
, vol.40
, pp. 1493-1498
-
-
Dunlop, M.J.1
Cox 3rd, R.S.2
Levine, J.H.3
Murray, R.M.4
Elowitz, M.B.5
-
34
-
-
57349097152
-
Dynamic proteomics of individual cancer cells in response to drugs
-
Cohen AA, Geva-Zatorsky N, Eden E, Frenkel-Morgenstern M, Issaeva I, et al. (2008) Dynamic proteomics of individual cancer cells in response to drugs. Science 321: 1511-1516.
-
(2008)
Science
, vol.321
, pp. 1511-1516
-
-
Cohen, A.A.1
Geva-Zatorsky, N.2
Eden, E.3
Frenkel-Morgenstern, M.4
Issaeva, I.5
-
35
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Bolstad BM, Irizarry RA, Astrand M, Speed TP (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19: 185-193.
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
36
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, et al. (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4: 249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
-
37
-
-
33645143721
-
Effects of filtering by Present call on analysis of microarray experiments
-
McClintick JN, Edenberg HJ (2006) Effects of filtering by Present call on analysis of microarray experiments. BMC bioinformatics 7: 49.
-
(2006)
BMC bioinformatics
, vol.7
, pp. 49
-
-
McClintick, J.N.1
Edenberg, H.J.2
-
38
-
-
0034069495
-
Gene Ontology: Tool for the unification of biology
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene Ontology: tool for the unification of biology. Nat Genet 25: 25-29.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
-
39
-
-
0141742293
-
PANTHER: A library of protein families and subfamilies indexed by function
-
Thomas PD, Campbell MJ, Kejariwal A, Mi H, Karlak B, et al. (2003) PANTHER: a library of protein families and subfamilies indexed by function. Genome Res 13: 2129-2141.
-
(2003)
Genome Res
, vol.13
, pp. 2129-2141
-
-
Thomas, P.D.1
Campbell, M.J.2
Kejariwal, A.3
Mi, H.4
Karlak, B.5
-
40
-
-
0033982936
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
Kanehisa M, Goto S (2000) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res 28: 27-30.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
|