메뉴 건너뛰기




Volumn 4, Issue 3, 2009, Pages

Emergent genome-wide control in wildtype and genetically mutated lipopolysaccarides-stimulated macrophages

Author keywords

[No Author keywords available]

Indexed keywords

LIPOPOLYSACCHARIDE; MESSENGER RNA; MYELOID DIFFERENTIATION FACTOR 88; TOLL LIKE RECEPTOR ADAPTOR MOLECULE 1; TICAM 1 PROTEIN, MOUSE; TICAM-1 PROTEIN, MOUSE; VESICULAR TRANSPORT ADAPTOR PROTEIN;

EID: 63749102693     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0004905     Document Type: Article
Times cited : (40)

References (40)
  • 1
    • 32944464648 scopus 로고    scopus 로고
    • Pathogen recognition and innate immunity
    • Akira S, Uematsu S, Takeuchi O (2006) Pathogen recognition and innate immunity. Cell 124: 783-801.
    • (2006) Cell , vol.124 , pp. 783-801
    • Akira, S.1    Uematsu, S.2    Takeuchi, O.3
  • 2
    • 10644262982 scopus 로고    scopus 로고
    • Plasmacytoid dendritic cells: Linking innate and adaptive immunity
    • McKenna K, Beignon AS, Bhardwaj N (2005) Plasmacytoid dendritic cells: linking innate and adaptive immunity. J Virol 79: 17-27.
    • (2005) J Virol , vol.79 , pp. 17-27
    • McKenna, K.1    Beignon, A.S.2    Bhardwaj, N.3
  • 3
    • 34447505084 scopus 로고    scopus 로고
    • Toll-like receptors and Type I interferons
    • Uematsu S, Akira S (2007) Toll-like receptors and Type I interferons. J Biol Chem 282: 15319-15323.
    • (2007) J Biol Chem , vol.282 , pp. 15319-15323
    • Uematsu, S.1    Akira, S.2
  • 4
    • 0034886143 scopus 로고    scopus 로고
    • Toll-like receptors: Critical proteins linking innate and acquired immunity
    • Akira S, Takeda K, Kaisho T (2001) Toll-like receptors: critical proteins linking innate and acquired immunity. Nat Immunol 2: 675-680.
    • (2001) Nat Immunol , vol.2 , pp. 675-680
    • Akira, S.1    Takeda, K.2    Kaisho, T.3
  • 5
    • 32944462309 scopus 로고    scopus 로고
    • Anti-immunology: Evasion of the host immune system by bacterial and viral pathogens
    • Finlay BB, McFadden G (2006) Anti-immunology: evasion of the host immune system by bacterial and viral pathogens. Cell 124: 767-782.
    • (2006) Cell , vol.124 , pp. 767-782
    • Finlay, B.B.1    McFadden, G.2
  • 6
    • 33745679123 scopus 로고    scopus 로고
    • Targeting signal transduction as a strategy to treat inflammatory diseases
    • O'Neill LA (2006) Targeting signal transduction as a strategy to treat inflammatory diseases. Nat Rev Drug Discov 5: 549-563.
    • (2006) Nat Rev Drug Discov , vol.5 , pp. 549-563
    • O'Neill, L.A.1
  • 7
    • 50249168819 scopus 로고    scopus 로고
    • Toll-like receptor modulation in head and neck cancer
    • Pries R, Wulff S, Wollenberg B (2008) Toll-like receptor modulation in head and neck cancer. Crit Rev Immunol 28: 201-213.
    • (2008) Crit Rev Immunol , vol.28 , pp. 201-213
    • Pries, R.1    Wulff, S.2    Wollenberg, B.3
  • 8
    • 5444254408 scopus 로고    scopus 로고
    • Toll-like receptors in the pathogenesis of human disease
    • Cook DN, Pisetsky DS, Schwartz DA (2004) Toll-like receptors in the pathogenesis of human disease. Nat Immunol 10: 975-979.
    • (2004) Nat Immunol , vol.10 , pp. 975-979
    • Cook, D.N.1    Pisetsky, D.S.2    Schwartz, D.A.3
  • 9
    • 19344372271 scopus 로고    scopus 로고
    • Systems biology: Its practice and challenges
    • Aderem A (2005) Systems biology: its practice and challenges. Cell 121: 511-513.
    • (2005) Cell , vol.121 , pp. 511-513
    • Aderem, A.1
  • 10
    • 13444257582 scopus 로고    scopus 로고
    • Regulation of lipopolysaccharide-inducible genes by MyD88 and Toll/IL-1 domain containing adaptor inducing IFN-beta
    • Hirotani T, Yamamoto M, Kumagai Y, Uematsu S, Kawase I, et al. (2005) Regulation of lipopolysaccharide-inducible genes by MyD88 and Toll/IL-1 domain containing adaptor inducing IFN-beta. Biochem Biophys Res Commun 328: 383-392.
    • (2005) Biochem Biophys Res Commun , vol.328 , pp. 383-392
    • Hirotani, T.1    Yamamoto, M.2    Kumagai, Y.3    Uematsu, S.4    Kawase, I.5
  • 13
    • 39749192575 scopus 로고    scopus 로고
    • Self-organization in cell biology: A brief history
    • Karsenti E (2008) Self-organization in cell biology: a brief history. Nat Rev Mol Cell Biol 9: 255-262.
    • (2008) Nat Rev Mol Cell Biol , vol.9 , pp. 255-262
    • Karsenti, E.1
  • 14
    • 0742305866 scopus 로고    scopus 로고
    • Network Biology: Understanding the cell's functional organization
    • Barabási AL, Oltvai ZN (2004) Network Biology: Understanding the cell's functional organization. Nat Rev Genet 5: 101-113.
    • (2004) Nat Rev Genet , vol.5 , pp. 101-113
    • Barabási, A.L.1    Oltvai, Z.N.2
  • 15
    • 12144261863 scopus 로고    scopus 로고
    • Self-organization vs Watchmaker: Stochastic gene expression and cell differentiation
    • Kurakin A (2005) Self-organization vs Watchmaker: stochastic gene expression and cell differentiation. Dev Genes Evol 215: 46-52.
    • (2005) Dev Genes Evol , vol.215 , pp. 46-52
    • Kurakin, A.1
  • 16
    • 18144408736 scopus 로고    scopus 로고
    • Cell Fates as High-Dimensional Attractor States of a Complex Gene Regulatory Networks
    • Huang S, Eichler G, Bar-Yan Y, Ingber DE (2005) Cell Fates as High-Dimensional Attractor States of a Complex Gene Regulatory Networks. Phys Rev Lett 94: 12870-12874.
    • (2005) Phys Rev Lett , vol.94 , pp. 12870-12874
    • Huang, S.1    Eichler, G.2    Bar-Yan, Y.3    Ingber, D.E.4
  • 17
    • 0037442317 scopus 로고    scopus 로고
    • The topology of the transcription regulatory network in the yeast, Saccharomyces cerevisiae
    • Farkas I, Jeong H, Vicsek T, Barabasi AL, Oltvai ZN (2003) The topology of the transcription regulatory network in the yeast, Saccharomyces cerevisiae. Physica A 318: 601-612.
    • (2003) Physica A , vol.318 , pp. 601-612
    • Farkas, I.1    Jeong, H.2    Vicsek, T.3    Barabasi, A.L.4    Oltvai, Z.N.5
  • 19
    • 33748491517 scopus 로고    scopus 로고
    • The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
    • Shi L, Reid LH, Jones WD, Shippy R, Warrington JA, et al. (2006) The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nat Biotech 24: 1151-1161.
    • (2006) Nat Biotech , vol.24 , pp. 1151-1161
    • Shi, L.1    Reid, L.H.2    Jones, W.D.3    Shippy, R.4    Warrington, J.A.5
  • 20
    • 44349162752 scopus 로고    scopus 로고
    • Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
    • Chang H, Hemberg M, Barahona M, Ingber DE, Huang S (2008) Transcriptome-wide noise controls lineage choice in mammalian progenitor cells. Nature 453: 544-548.
    • (2008) Nature , vol.453 , pp. 544-548
    • Chang, H.1    Hemberg, M.2    Barahona, M.3    Ingber, D.E.4    Huang, S.5
  • 21
    • 0033166472 scopus 로고    scopus 로고
    • Unresponsiveness of MyD88-deficient mice to endotoxin
    • Kawai T, Adachi O, Ogawa T, Takeda K, Akira S (1999) Unresponsiveness of MyD88-deficient mice to endotoxin. Immunity 11: 115-122.
    • (1999) Immunity , vol.11 , pp. 115-122
    • Kawai, T.1    Adachi, O.2    Ogawa, T.3    Takeda, K.4    Akira, S.5
  • 22
    • 0036578644 scopus 로고    scopus 로고
    • GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways
    • Dahlquist KD, Salomonis N, Vranizan K, Lawlor SC, Conklin BR (2002) GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways. Nat Genet 31: 19-20.
    • (2002) Nat Genet , vol.31 , pp. 19-20
    • Dahlquist, K.D.1    Salomonis, N.2    Vranizan, K.3    Lawlor, S.C.4    Conklin, B.R.5
  • 23
    • 19944362471 scopus 로고    scopus 로고
    • The induction of macrophage gene expression by LPS predominantly utilizes Myd88-independent signaling cascades
    • Björkbacka H, Fitzgerald KA, Huet F, Li X, Gregory JA, et al. (2004) The induction of macrophage gene expression by LPS predominantly utilizes Myd88-independent signaling cascades. Physiol Genomics 19: 319-330.
    • (2004) Physiol Genomics , vol.19 , pp. 319-330
    • Björkbacka, H.1    Fitzgerald, K.A.2    Huet, F.3    Li, X.4    Gregory, J.A.5
  • 24
    • 0043176281 scopus 로고    scopus 로고
    • Role of adaptor TRIF in the MyD88-independent toll-like receptor signaling pathway
    • Yamamoto M, Sato S, Hemmi H, Hoshino K, Kaisho T, et al. (2003) Role of adaptor TRIF in the MyD88-independent toll-like receptor signaling pathway. Science 301: 640-643.
    • (2003) Science , vol.301 , pp. 640-643
    • Yamamoto, M.1    Sato, S.2    Hemmi, H.3    Hoshino, K.4    Kaisho, T.5
  • 25
  • 26
    • 63749112446 scopus 로고    scopus 로고
    • Selvarajoo K (2008) Decoding the Signaling Mechanism of Toll-Like Receptor 4 Pathways in Wild Type and Knockouts. In: Ghosh S, Arjunan S, Dhar P, Tomita M, eds. E-Cell System - Basic Concepts and Applications. New York: Landes Bioscience and Springer Science+Business Media, In press.
    • Selvarajoo K (2008) Decoding the Signaling Mechanism of Toll-Like Receptor 4 Pathways in Wild Type and Knockouts. In: Ghosh S, Arjunan S, Dhar P, Tomita M, eds. E-Cell System - Basic Concepts and Applications. New York: Landes Bioscience and Springer Science+Business Media, In press.
  • 27
    • 59449091251 scopus 로고    scopus 로고
    • Local and Global responses in complex gene regulation networks
    • Tsuchiya M, Selvarajoo K, Piras V, Tomita M, Giuliani A (2008) Local and Global responses in complex gene regulation networks. Physica A 388: 1738-1746.
    • (2008) Physica A , vol.388 , pp. 1738-1746
    • Tsuchiya, M.1    Selvarajoo, K.2    Piras, V.3    Tomita, M.4    Giuliani, A.5
  • 28
    • 38049148026 scopus 로고    scopus 로고
    • DAVID Knowledgebase: A gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis
    • Sherman BT, Huang da W, Tan Q, Guo Y, Bour S, et al. (2007) DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis. BMC Bioinformatics 8: 426.
    • (2007) BMC Bioinformatics , vol.8 , pp. 426
    • Sherman, B.T.1    Huang da, W.2    Tan, Q.3    Guo, Y.4    Bour, S.5
  • 30
    • 42649096299 scopus 로고    scopus 로고
    • Collective behavior in gene regulation: The cell is an oscillator, the cell cycle a developmental process
    • Klevecz R, Li C, Marcus I, Frankel P (2008) Collective behavior in gene regulation: The cell is an oscillator, the cell cycle a developmental process. FEBS J 275: 2372-2384.
    • (2008) FEBS J , vol.275 , pp. 2372-2384
    • Klevecz, R.1    Li, C.2    Marcus, I.3    Frankel, P.4
  • 31
    • 34248993889 scopus 로고    scopus 로고
    • Gene expression waves: Cell cycle independent collective dynamics in cultured cells
    • Tsuchiya M, Wong ST, Yeo ZX, Colosimo A, Palumbo MC, et al. (2007) Gene expression waves: cell cycle independent collective dynamics in cultured cells. FEBS J 274: 2874-2886.
    • (2007) FEBS J , vol.274 , pp. 2874-2886
    • Tsuchiya, M.1    Wong, S.T.2    Yeo, Z.X.3    Colosimo, A.4    Palumbo, M.C.5
  • 32
    • 0037119587 scopus 로고    scopus 로고
    • Stochastic gene expression in a single cell.Science
    • Elowitz MB, Levine AJ, Siggia ED, Swain PS (2002) Stochastic gene expression in a single cell.Science. Science 297: 1129-1131.
    • (2002) Science , vol.297 , pp. 1129-1131
    • Elowitz, M.B.1    Levine, A.J.2    Siggia, E.D.3    Swain, P.S.4
  • 33
    • 56749102636 scopus 로고    scopus 로고
    • Regulatory activity revealed by dynamic correlations in gene expression noise
    • Dunlop MJ, Cox RS 3rd, Levine JH, Murray RM, Elowitz MB (2008) Regulatory activity revealed by dynamic correlations in gene expression noise. Nat Genet 40: 1493-1498.
    • (2008) Nat Genet , vol.40 , pp. 1493-1498
    • Dunlop, M.J.1    Cox 3rd, R.S.2    Levine, J.H.3    Murray, R.M.4    Elowitz, M.B.5
  • 35
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Bolstad BM, Irizarry RA, Astrand M, Speed TP (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19: 185-193.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 36
    • 0142121516 scopus 로고    scopus 로고
    • Exploration, normalization, and summaries of high density oligonucleotide array probe level data
    • Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, et al. (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4: 249-264.
    • (2003) Biostatistics , vol.4 , pp. 249-264
    • Irizarry, R.A.1    Hobbs, B.2    Collin, F.3    Beazer-Barclay, Y.D.4    Antonellis, K.J.5
  • 37
    • 33645143721 scopus 로고    scopus 로고
    • Effects of filtering by Present call on analysis of microarray experiments
    • McClintick JN, Edenberg HJ (2006) Effects of filtering by Present call on analysis of microarray experiments. BMC bioinformatics 7: 49.
    • (2006) BMC bioinformatics , vol.7 , pp. 49
    • McClintick, J.N.1    Edenberg, H.J.2
  • 39
    • 0141742293 scopus 로고    scopus 로고
    • PANTHER: A library of protein families and subfamilies indexed by function
    • Thomas PD, Campbell MJ, Kejariwal A, Mi H, Karlak B, et al. (2003) PANTHER: a library of protein families and subfamilies indexed by function. Genome Res 13: 2129-2141.
    • (2003) Genome Res , vol.13 , pp. 2129-2141
    • Thomas, P.D.1    Campbell, M.J.2    Kejariwal, A.3    Mi, H.4    Karlak, B.5
  • 40
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto Encyclopedia of Genes and Genomes
    • Kanehisa M, Goto S (2000) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res 28: 27-30.
    • (2000) Nucleic Acids Res , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.