Our evolving knowledge of the transcriptional landscape

Mammalian Genome

Volumn 19, Issue 10-12, 2008, Pages 663-666

  Hume, David A ^a  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEASOME; RNA;

GENE EXPRESSION PROFILING; GENETIC TRANSCRIPTION; GENOME; KNOWLEDGE; NONHUMAN; NOTE; PROMOTER REGION; RETROPOSON; RNA TRANSCRIPTION;

ANIMALS; BASE SEQUENCE; GENE EXPRESSION PROFILING; GENOME; GENOME, HUMAN; HUMANS; MICE; MOLECULAR SEQUENCE DATA; PROMOTER REGIONS, GENETIC; RNA, MESSENGER; RNA, UNTRANSLATED; TRANSCRIPTION INITIATION SITE; TRANSCRIPTION, GENETIC;

MAMMALIA;

EID: 58149290026     PISSN: 09388990     EISSN: 14321777     Source Type: Journal    
DOI: 10.1007/s00335-008-9140-y     Document Type: Note

References (20)

1. ME Blewitt NK Vickaryous A Paldi H Koseki E Whitelaw 2006 Dynamic reprogramming of DNA methylation at an epigenetically sensitive allele in mice PLoS Genet 2 e49
2. C Bonifer DA Hume 2008 The transcriptional regulation of the Colony-Stimulating Factor 1 Receptor (csf1r) gene during hematopoiesis Front Biosci 13 549 560
3. P Carninci T Kasukawa S Katayama J Gough MC Frith 2005 The transcriptional landscape of the mammalian genome Science 309 1559 1563
4. P Carninci A Sandelin B Lenhard S Katayama K Shimokawa 2006 Genome-wide analysis of mammalian promoter architecture and evolution Nat Genet 38 626 635
5. MJ Davis KA Hanson F Clark JL Fink F Zhang 2006 Differential use of signal peptides and membrane domains is a common occurrence in the protein output of transcriptional units PLoS Genet 2 e46
6. PG Engstrom H Suzuki N Ninomiya A Akalin L Sessa 2006 Complex loci in human and mouse genomes PLoS Genet 2 e47
7. GJ Faulkner AR Forrest AM Chalk K Schroder Y Hayashizaki 2008 A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE Genomics 91 281 288
8. MC Frith E Valen A Krogh Y Hayashizaki P Carninci 2008 A code for transcription initiation in mammalian genomes Genome Res 18 1 12
9. A Gimelbrant JN Hutchinson BR Thompson A Chess 2007 Widespread monoallelic expression on human autosomes Science 318 1136 1140
10. R Holmes C Williamson J Peters P Denny C Wells 2003 A comprehensive transcript map of the mouse Gnas imprinted complex Genome Res 13 1410 1415
11. DA Hume T Sasmono M Constantin SR Himes MC Ostrowski 2008 The Ewing sarcoma protein (EWS) binds directly to proximal promoter elements of the macrophage-specific promoter of the CSF-1 receptor (c-fms) gene J Immunol 180 6733 6742
12. S Katayama Y Tomaru T Kasukawa K Waki M Nakanishi 2005 Antisense transcription in the mammalian transcriptome Science 309 1564 1566
13. N Maeda H Nishiyori M Nakamura C Kawazu M Murata 2008 Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression using ultra high throughput sequencer Biotechniques 45 95 97
14. VK Rakyan S Chong ME Champ PC Cuthbert HD Morgan 2003 Transgenerational inheritance of epigenetic states at the murine Axin(Fu) allele occurs after maternal and paternal transmission Proc Natl Acad Sci U S A 100 2538 2543
15. T Ravasi H Suzuki KC Pang S Katayama M Furuno 2006 Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome Genome Res 16 11 19
16. A Sandelin P Carninci B Lenhard J Ponjavic Y Hayashizaki 2007 Mammalian RNA polymerase II core promoters: insights from genome-wide studies Nat Rev 8 424 436
17. N Singh FA Ebrahimi AA Gimelbrant AW Ensminger MR Tackett 2003 Coordination of the random asynchronous replication of autosomal loci Nat Genet 33 339 341
18. NC Walsh M Cahill P Carninci J Kawai Y Okazaki 2003 Multiple tissue-specific promoters control expression of the murine tartrate-resistant acid phosphatase gene Gene 307 111 123
19. CA Wells AM Chalk A Forrest D Taylor N Waddell 2006 Alternate transcription of the Toll-like receptor signaling cascade Genome Biol 7 R10
20. X Yue P Favot TL Dunn AI Cassady DA Hume 1993 Expression of mRNA encoding the macrophage colony-stimulating factor receptor (c-fms) is controlled by a constitutive promoter and tissue-specific transcription elongation Mol Cell Biol 13 3191 3201