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Volumn 16, Issue 5, 2010, Pages 893-903

Dicer's helicase domain is required for accumulation of some, but not all, C. elegans endogenous siRNAs

Author keywords

Dicer; Helicase; miRNA; RNAi; siRNA

Indexed keywords

DICER; DOUBLE STRANDED RNA; HELICASE; MESSENGER RNA; MICRORNA; SMALL INTERFERING RNA;

EID: 77951169802     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.2122010     Document Type: Article
Times cited : (59)

References (48)
  • 2
    • 37149049127 scopus 로고    scopus 로고
    • In vitro analyses of the production and activity of secondary small interfering RNAs in C. elegans
    • Aoki K, Moriguchi H, Yoshioka T, Okawa K, Tabara H. 2007. In vitro analyses of the production and activity of secondary small interfering RNAs in C. elegans. EMBO J 26: 5007-5019.
    • (2007) EMBO J , vol.26 , pp. 5007-5019
    • Aoki, K.1    Moriguchi, H.2    Yoshioka, T.3    Okawa, K.4    Tabara, H.5
  • 3
    • 46049089802 scopus 로고    scopus 로고
    • Functional characterization of endogenous siRNA target genes in Caenorhabditis elegans
    • doi: 10.1186/1471-2164-9-270
    • Asikainen S, Heikkinen L, Wong G, Storvik M. 2008. Functional characterization of endogenous siRNA target genes in Caenorhabditis elegans. BMC Genomics 9: 270. doi: 10.1186/1471-2164-9-270.
    • (2008) BMC Genomics , vol.9 , pp. 270
    • Asikainen, S.1    Heikkinen, L.2    Wong, G.3    Storvik, M.4
  • 5
    • 0035905766 scopus 로고    scopus 로고
    • Role for a bidentate ribonuclease in the initiation step of RNA interference
    • Bernstein E, Caudy AA, Hammond SM, Hannon GJ. 2001. Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 409: 363-366.
    • (2001) Nature , vol.409 , pp. 363-366
    • Bernstein, E.1    Caudy, A.A.2    Hammond, S.M.3    Hannon, G.J.4
  • 6
    • 60149088848 scopus 로고    scopus 로고
    • Origins and mechanisms of miRNAs and siRNAs
    • Carthew RW, Sontheimer EJ. 2009. Origins and mechanisms of miRNAs and siRNAs. Cell 136: 642-655.
    • (2009) Cell , vol.136 , pp. 642-655
    • Carthew, R.W.1    Sontheimer, E.J.2
  • 7
    • 34547211819 scopus 로고    scopus 로고
    • Coupling of double-stranded RNA synthesis and siRNA generation in fission yeast RNAi
    • Colmenares SU, Buker SM, Buhler M, Dlakic M, Moazed D. 2007. Coupling of double-stranded RNA synthesis and siRNA generation in fission yeast RNAi. Mol Cell 27: 449-461.
    • (2007) Mol Cell , vol.27 , pp. 449-461
    • Colmenares, S.U.1    Buker, S.M.2    Buhler, M.3    Dlakic, M.4    Moazed, D.5
  • 13
    • 17844364875 scopus 로고    scopus 로고
    • Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing
    • Grishok A, Pasquinelli AE, Conte D, Li N, Parrish S, Ha I, Baillie DL, Fire A, Ruvkun G, Mello CC. 2001. Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing. Cell 106: 23-34.
    • (2001) Cell , vol.106 , pp. 23-34
    • Grishok, A.1    Pasquinelli, A.E.2    Conte, D.3    Li, N.4    Parrish, S.5    Ha, I.6    Baillie, D.L.7    Fire, A.8    Ruvkun, G.9    Mello, C.C.10
  • 15
    • 58149194597 scopus 로고    scopus 로고
    • In C. elegans, high levels of dsRNA allow RNAi in the absence of RDE-4
    • doi: 10.1371/journal.pone.0004052
    • Habig JW, Aruscavage PJ, Bass BL. 2008. In C. elegans, high levels of dsRNA allow RNAi in the absence of RDE-4. PLoS One 3: e4052. doi: 10.1371/journal.pone.0004052.
    • (2008) PLoS One , vol.3
    • Habig, J.W.1    Aruscavage, P.J.2    Bass, B.L.3
  • 17
    • 51349109743 scopus 로고    scopus 로고
    • A starvation-induced noncoding RNA modulates expression of Dicer-regulated genes
    • Hellwig S, Bass BL. 2008. A starvation-induced noncoding RNA modulates expression of Dicer-regulated genes. Proc Natl Acad Sci 105: 12897-12902.
    • (2008) Proc Natl Acad Sci , vol.105 , pp. 12897-12902
    • Hellwig, S.1    Bass, B.L.2
  • 18
    • 0347357618 scopus 로고    scopus 로고
    • A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans
    • Johnston RJ, Hobert O. 2003. A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans. Nature 426: 845-849.
    • (2003) Nature , vol.426 , pp. 845-849
    • Johnston, R.J.1    Hobert, O.2
  • 20
    • 0030903160 scopus 로고    scopus 로고
    • Distinct requirements for somatic and germline expression of a generally expressed Caernorhabditis elegans gene
    • Kelly WG, Xu S, Montgomery MK, Fire A. 1997. Distinct requirements for somatic and germline expression of a generally expressed Caernorhabditis elegans gene. Genetics 146: 227-238.
    • (1997) Genetics , vol.146 , pp. 227-238
    • Kelly, W.G.1    Xu, S.2    Montgomery, M.K.3    Fire, A.4
  • 21
    • 0035887005 scopus 로고    scopus 로고
    • Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans
    • Ketting RF, Fischer SE, Bernstein E, Sijen T, Hannon GJ, Plasterk RH. 2001. Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans. Genes & Dev 15: 2654-2659.
    • (2001) Genes & Dev , vol.15 , pp. 2654-2659
    • Ketting, R.F.1    Fischer, S.E.2    Bernstein, E.3    Sijen, T.4    Hannon, G.J.5    Plasterk, R.H.6
  • 22
    • 0013627747 scopus 로고    scopus 로고
    • Mutational analysis of the hepatitis C virus RNA helicase
    • Kim DW, Kim J, Gwack Y, Han JH, Choe J. 1997. Mutational analysis of the hepatitis C virus RNA helicase. J Virol 71: 9400-9409. (Pubitemid 27492383)
    • (1997) Journal of Virology , vol.71 , Issue.12 , pp. 9400-9409
    • Kim, D.W.1    Kim, J.2    Gwack, Y.3    Han, J.H.4    Choe, J.5
  • 23
    • 0035929322 scopus 로고    scopus 로고
    • A role for the RNase III enzyme DCR-1 in RNA interference and germ line development in Caenorhabditis elegans
    • Knight SW, Bass BL. 2001. A role for the RNase III enzyme DCR-1 in RNA interference and germ line development in Caenorhabditis elegans. Science 293: 2269-2271.
    • (2001) Science , vol.293 , pp. 2269-2271
    • Knight, S.W.1    Bass, B.L.2
  • 24
    • 34447118910 scopus 로고    scopus 로고
    • Physical and functional coupling of RNA-dependent RNA polymerase and Dicer in the biogenesis of endogenous siRNAs
    • Lee SR, Collins K. 2007. Physical and functional coupling of RNA-dependent RNA polymerase and Dicer in the biogenesis of endogenous siRNAs. Nat Struct Mol Biol 14: 604-610.
    • (2007) Nat Struct Mol Biol , vol.14 , pp. 604-610
    • Lee, S.R.1    Collins, K.2
  • 25
    • 1842816517 scopus 로고    scopus 로고
    • Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways
    • Lee YS, Nakahara K, Pham JW, Kim K, He Z, Sontheimer EJ, Carthew RW. 2004. Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways. Cell 117: 69-81.
    • (2004) Cell , vol.117 , pp. 69-81
    • Lee, Y.S.1    Nakahara, K.2    Pham, J.W.3    Kim, K.4    He, Z.5    Sontheimer, E.J.6    Carthew, R.W.7
  • 26
    • 33645464445 scopus 로고    scopus 로고
    • Interacting endogenous and exogenous RNAi pathways in Caenorhabditis elegans
    • Lee RC, Hammell CM, Ambros V. 2006a. Interacting endogenous and exogenous RNAi pathways in Caenorhabditis elegans. RNA 12: 589-597.
    • (2006) RNA , vol.12 , pp. 589-597
    • Lee, R.C.1    Hammell, C.M.2    Ambros, V.3
  • 28
    • 42449141601 scopus 로고    scopus 로고
    • Nonhexameric DNA helicases and translocases: Mechanisms and regulation
    • Lohman TM, Tomko EJ, Wu CG. 2008. Nonhexameric DNA helicases and translocases: Mechanisms and regulation. Nat Rev Mol Cell Biol 9: 391-401.
    • (2008) Nat Rev Mol Cell Biol , vol.9 , pp. 391-401
    • Lohman, T.M.1    Tomko, E.J.2    Wu, C.G.3
  • 29
    • 44649136660 scopus 로고    scopus 로고
    • Autoinhibition of human dicer by its internal helicase domain
    • Ma E, MacRae IJ, Kirsch JF, Doudna JA. 2008. Autoinhibition of human dicer by its internal helicase domain. J Mol Biol 380: 237-243.
    • (2008) J Mol Biol , vol.380 , pp. 237-243
    • Ma, E.1    MacRae, I.J.2    Kirsch, J.F.3    Doudna, J.A.4
  • 30
    • 33846927800 scopus 로고    scopus 로고
    • Ribonuclease revisited: Structural insights into ribonuclease III family enzymes
    • MacRae IJ, Doudna JA. 2007. Ribonuclease revisited: Structural insights into ribonuclease III family enzymes. Curr Opin Struct Biol 17: 138-145.
    • (2007) Curr Opin Struct Biol , vol.17 , pp. 138-145
    • MacRae, I.J.1    Doudna, J.A.2
  • 32
    • 60849117520 scopus 로고    scopus 로고
    • Empirical methods for controlling false positives and estimating confidence in chIP-seq peaks
    • doi: 10.1186/1471-2105-9-523
    • Nix DA, Courdy SJ, Boucher KM. 2008. Empirical methods for controlling false positives and estimating confidence in chIP-seq peaks. BMC Bioinformatics 9: 523. doi: 10.1186/1471-2105-9-523.
    • (2008) BMC Bioinformatics , vol.9 , pp. 523
    • Nix, D.A.1    Courdy, S.J.2    Boucher, K.M.3
  • 33
    • 44349101881 scopus 로고    scopus 로고
    • Two distinct mechanisms generate endogenous siRNAs from bidirectional transcription in Drosophila melanogaster
    • Okamura K, Balla S, Martin R, Liu N, Lai EC. 2008. Two distinct mechanisms generate endogenous siRNAs from bidirectional transcription in Drosophila melanogaster. Nat Struct Mol Biol 15: 581-590.
    • (2008) Nat Struct Mol Biol , vol.15 , pp. 581-590
    • Okamura, K.1    Balla, S.2    Martin, R.3    Liu, N.4    Lai, E.C.5
  • 34
    • 33846527241 scopus 로고    scopus 로고
    • Distinct populations of primary and secondary effectors during RNAi in C. elegans
    • Pak J, Fire A. 2007. Distinct populations of primary and secondary effectors during RNAi in C. elegans. Science 315: 241-244.
    • (2007) Science , vol.315 , pp. 241-244
    • Pak, J.1    Fire, A.2
  • 35
    • 34250374820 scopus 로고    scopus 로고
    • Carbodiimide-mediated cross-linking of RNA to nylon membranes improves the detection of siRNA, miRNA and piRNA by northern blot
    • doi: 10.1093/nar/gkm112
    • Pall GS, Codony-Servat C, Byrne J, Ritchie L, Hamilton A. 2007. Carbodiimide-mediated cross-linking of RNA to nylon membranes improves the detection of siRNA, miRNA and piRNA by northern blot. Nucleic Acids Res 35: e60. doi: 10.1093/nar/gkm112.
    • (2007) Nucleic Acids Res , vol.35
    • Pall, G.S.1    Codony-Servat, C.2    Byrne, J.3    Ritchie, L.4    Hamilton, A.5
  • 36
    • 71549147194 scopus 로고    scopus 로고
    • Requirement for the ERI/DICER complex in endogenous RNA interference and sperm development in Caenorhabditis elegans
    • Pavelec DM, Lachowiec J, Duchaine TF, Smith HE, Kennedy S. 2009. Requirement for the ERI/DICER complex in endogenous RNA interference and sperm development in Caenorhabditis elegans. Genetics 183: 1283-1295.
    • (2009) Genetics , vol.183 , pp. 1283-1295
    • Pavelec, D.M.1    Lachowiec, J.2    Duchaine, T.F.3    Smith, H.E.4    Kennedy, S.5
  • 37
    • 48249113056 scopus 로고    scopus 로고
    • Translocation and unwinding mechanisms of RNA and DNA helicases
    • Pyle AM. 2008. Translocation and unwinding mechanisms of RNA and DNA helicases. Annu Rev Biophys 37: 317-336.
    • (2008) Annu Rev Biophys , vol.37 , pp. 317-336
    • Pyle, A.M.1
  • 38
    • 33845436047 scopus 로고    scopus 로고
    • Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    • Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP. 2006. Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans. Cell 127: 1193-1207.
    • (2006) Cell , vol.127 , pp. 1193-1207
    • Ruby, J.G.1    Jan, C.2    Player, C.3    Axtell, M.J.4    Lee, W.5    Nusbaum, C.6    Ge, H.7    Bartel, D.P.8
  • 39
    • 33846524902 scopus 로고    scopus 로고
    • Secondary siRNAs result from unprimed RNA synthesis and form a distinct class
    • Sijen T, Steiner FA, Thijssen KL, Plasterk RH. 2007. Secondary siRNAs result from unprimed RNA synthesis and form a distinct class. Science 315: 244-247.
    • (2007) Science , vol.315 , pp. 244-247
    • Sijen, T.1    Steiner, F.A.2    Thijssen, K.L.3    Plasterk, R.H.4
  • 41
    • 34548638261 scopus 로고    scopus 로고
    • Structure and mechanism of helicases and nucleic acid translocases
    • Singleton MR, Dillingham MS, Wigley DB. 2007. Structure and mechanism of helicases and nucleic acid translocases. Annu Rev Biochem 76: 23-50.
    • (2007) Annu Rev Biochem , vol.76 , pp. 23-50
    • Singleton, M.R.1    Dillingham, M.S.2    Wigley, D.B.3
  • 43
    • 0035941485 scopus 로고    scopus 로고
    • Ingestion of bacterially expressed dsRNAs can produce specific and potent genetic interference in Caenorhabditis elegans
    • Timmons L, Court DL, Fire A. 2001. Ingestion of bacterially expressed dsRNAs can produce specific and potent genetic interference in Caenorhabditis elegans. Gene 263: 103-112.
    • (2001) Gene , vol.263 , pp. 103-112
    • Timmons, L.1    Court, D.L.2    Fire, A.3
  • 44
    • 35349023128 scopus 로고    scopus 로고
    • Functional anatomy of the Drosophila microRNA-generating enzyme
    • Ye X, Paroo Z, Liu Q. 2007. Functional anatomy of the Drosophila microRNA-generating enzyme. J Biol Chem 282: 28373-28378.
    • (2007) J Biol Chem , vol.282 , pp. 28373-28378
    • Ye, X.1    Paroo, Z.2    Liu, Q.3
  • 46
    • 0036845374 scopus 로고    scopus 로고
    • Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP
    • Zhang H, Kolb FA, Brondani V, Billy E, Filipowicz W. 2002. Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP. EMBO J 21: 5875-5885.
    • (2002) EMBO J , vol.21 , pp. 5875-5885
    • Zhang, H.1    Kolb, F.A.2    Brondani, V.3    Billy, E.4    Filipowicz, W.5
  • 47
    • 3142613181 scopus 로고    scopus 로고
    • Single processing center models for human Dicer and bacterial RNase III
    • Zhang H, Kolb FA, Jaskiewicz L, Westhof E, Filipowicz W. 2004. Single processing center models for human Dicer and bacterial RNase III. Cell 118: 57-68.
    • (2004) Cell , vol.118 , pp. 57-68
    • Zhang, H.1    Kolb, F.A.2    Jaskiewicz, L.3    Westhof, E.4    Filipowicz, W.5
  • 48
    • 33746785696 scopus 로고    scopus 로고
    • Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species
    • Zhang Y, Liu XS, Liu QR, Wei L. 2006. Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species. Nucleic Acids Res 34: 3465-3475.
    • (2006) Nucleic Acids Res , vol.34 , pp. 3465-3475
    • Zhang, Y.1    Liu, X.S.2    Liu, Q.R.3    Wei, L.4


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