-
1
-
-
47949131551
-
Life, logic and information
-
Nurse P. Life, logic and information. Nature. 2008;454(7203):424-426.
-
(2008)
Nature
, vol.454
, Issue.7203
, pp. 424-426
-
-
Nurse, P.1
-
2
-
-
0033839526
-
Embracing complexity: Organicism for the 21st century
-
DOI 10.1002/1097-0177(2000)9999:9999<::AID-DVDY1036>3.0.CO;2-A
-
Gilbert SF, Sarkar S. Embracing complexity: organicism for the 21st century. Dev Dyn. 2000;219(1):1-9. (Pubitemid 30667118)
-
(2000)
Developmental Dynamics
, vol.219
, Issue.1
, pp. 1-9
-
-
Gilbert, S.F.1
Sarkar, S.2
-
4
-
-
0034598746
-
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
-
DOI 10.1038/35000501
-
Alizadeh AA, Eisen MB, Davis RE, et al. Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature. 2000;403(6769):503-511. (Pubitemid 30082188)
-
(2000)
Nature
, vol.403
, Issue.6769
, pp. 503-511
-
-
Alizadeh, A.A.1
Elsen, M.B.2
Davis, R.E.3
Ma, Ch.L.4
Lossos, I.S.5
Rosenwald, A.6
Boldrick, J.C.7
Sabet, H.8
Tran, T.9
Yu, X.10
Powell, J.I.11
Yang, L.12
Maru, G.E.13
Moore, T.14
Hudson Jr., J.15
Lu, L.16
Lewis, D.B.17
Tibshirani, R.18
Sherlock, G.19
Chan, W.C.20
Greiner, T.C.21
Weisenburger, D.D.22
Armitage, J.O.23
Warnke, R.24
Levy, R.25
Wilson, W.26
Grever, M.R.27
Byrd, J.C.28
Botstein, D.29
Brown, P.O.30
Staudt, L.M.31
more..
-
5
-
-
36849061166
-
The human red blood cell proteome and interactome
-
DOI 10.3181/0706-MR-156
-
Goodman SR, Kurdia A,Ammann L, Kakhniashvili D, Daescu O. The human red blood cell proteome and interactome. Exp Biol Med (Maywood). 2007;232(11):1391-1408. (Pubitemid 350220537)
-
(2007)
Experimental Biology and Medicine
, vol.232
, Issue.11
, pp. 1391-1408
-
-
Goodman, S.R.1
Kurdia, A.2
Ammann, L.3
Kakhniashvili, D.4
Daescu, O.5
-
6
-
-
20544437625
-
Quantitative proteome analysis of human plasma following in vivo lipopolysaccharide administration using 16O/18O labeling and the accurate mass and time tag approach
-
Qian WJ, Monroe ME, Liu T, et al. Quantitative proteome analysis of human plasma following in vivo lipopolysaccharide administration using 16O/18O labeling and the accurate mass and time tag approach. Mol Cell Proteomics. 2005;4(5):700-709.
-
(2005)
Mol Cell Proteomics
, vol.4
, Issue.5
, pp. 700-709
-
-
Qian, W.J.1
Monroe, M.E.2
Liu, T.3
-
11
-
-
0004207135
-
-
New York, NY: Springer
-
Fall C, Marland E, Wagner J, Tyson J. Computational Cell Biology. Vol 20. New York, NY: Springer; 2005.
-
(2005)
Computational Cell Biology
, vol.20
-
-
Fall, C.1
Marland, E.2
Wagner, J.3
Tyson, J.4
-
15
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
Uetz P, Giot L, Cagney G, et al. A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature. 2000;403(6770):623-627.
-
(2000)
Nature
, vol.403
, Issue.6770
, pp. 623-627
-
-
Uetz, P.1
Giot, L.2
Cagney, G.3
-
16
-
-
67749140118
-
Scale-free networks: A decade and beyond
-
Barabasi AL. Scale-free networks: a decade and beyond. Science. 2009;325(5939):412-413.
-
(2009)
Science
, vol.325
, Issue.5939
, pp. 412-413
-
-
Barabasi, A.L.1
-
17
-
-
8144219542
-
Emergence of complex dynamics in a simple model of signaling networks
-
DOI 10.1073/pnas.0404843101
-
Amaral LA, Diaz-Guilera A, Moreira AA, Goldberger AL, Lipsitz LA. Emergence of complex dynamics in a simple model of signaling networks. Proc Natl Acad Sci U S A. 2004;101(44):15551-15555. (Pubitemid 39473525)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.44
, pp. 15551-15555
-
-
Amaral, L.A.N.1
Diaz-Guilera, A.2
Moreira, A.A.3
Goldberger, A.L.4
Lipsitz, L.A.5
-
18
-
-
68449103579
-
The systems biology graphical notation
-
Le Novere N, Hucka M, Mi H, et al. The systems biology graphical notation. Nat Biotechnol. 2009;27(8):735-741.
-
(2009)
Nat Biotechnol
, vol.27
, Issue.8
, pp. 735-741
-
-
Le Novere, N.1
Hucka, M.2
Mi, H.3
-
19
-
-
50849139175
-
Gene regulatory networks directing myeloid and lymphoid cell fates within the immune system
-
Laslo P, Pongubala JM, Lancki DW, Singh H. Gene regulatory networks directing myeloid and lymphoid cell fates within the immune system. Semin Immunol. 2008;20(4):228-235.
-
(2008)
Semin Immunol
, vol.20
, Issue.4
, pp. 228-235
-
-
Laslo, P.1
Pongubala, J.M.2
Lancki, D.W.3
Singh, H.4
-
20
-
-
33747366698
-
Rules for modeling signal-transduction systems
-
Hlavacek WS, Faeder JR, Blinov ML, Posner RG, Hucka M, Fontana W. Rules for modeling signal-transduction systems. Sci STKE. 2006;2006(344):re6.
-
(2006)
Sci STKE
, vol.2006
, Issue.344
-
-
Hlavacek, W.S.1
Faeder, J.R.2
Blinov, M.L.3
Posner, R.G.4
Hucka, M.5
Fontana, W.6
-
21
-
-
0036322106
-
A novel dynamic model of hematopoietic stem cell organization based on the concept of within-tissue plasticity
-
DOI 10.1016/S0301-472X(02)00832-9, PII S0301472X02008329
-
Roeder I, Loeffler M. A novel dynamic model of hematopoietic stem cell organization based on the concept of within-tissue plasticity. Exp Hematol. 2002;30(8):853-861. (Pubitemid 34851245)
-
(2002)
Experimental Hematology
, vol.30
, Issue.8
, pp. 853-861
-
-
Roeder, I.1
Loeffler, M.2
-
22
-
-
78651158197
-
A stochastic model of stem cell proliferation, based on the growth of spleen colony-forming cells
-
Till JE, McCulloch EA, Siminovitch L. A stochastic model of stem cell proliferation, based on the growth of spleen colony-forming cells. Proc Natl Acad Sci U S A. 1964;51:29-36.
-
(1964)
Proc Natl Acad Sci U S A
, vol.51
, pp. 29-36
-
-
Till, J.E.1
McCulloch, E.A.2
Siminovitch, L.3
-
23
-
-
0024589538
-
Hemopoietic stem cells: Stochastic differentiation and humoral control of proliferation
-
Ogawa M. Hemopoietic stem cells: stochastic differentiation and humoral control of proliferation. Environ Health Perspect. 1989;80:199-207. (Pubitemid 19084677)
-
(1989)
Environmental Health Perspectives
, vol.80
, pp. 199-207
-
-
Ogawa, M.1
-
24
-
-
0021783614
-
Stochastic nature of stem cell functions in culture
-
Ogawa M, Pharr PN, Suda T. Stochastic nature of stem cell functions in culture. Prog Clin Biol Res. 1985;184:11-19.
-
(1985)
Prog Clin Biol Res
, vol.184
, pp. 11-19
-
-
Ogawa, M.1
Pharr, P.N.2
Suda, T.3
-
25
-
-
0014370762
-
The self renewal probability of hemopoietic stem cells
-
Vogel H, Niewisch H, Matioli G. The self renewal probability of hemopoietic stem cells. J Cell Physiol. 1968;72(3):221-228.
-
(1968)
J Cell Physiol
, vol.72
, Issue.3
, pp. 221-228
-
-
Vogel, H.1
Niewisch, H.2
Matioli, G.3
-
26
-
-
65349119367
-
Modeling of asymmetric cell division in hematopoietic stem cells-regulation of self-renewal is essential for efficient repopulation
-
Marciniak-Czochra A, Stiehl T, Ho AD, Jager W, Wagner W. Modeling of asymmetric cell division in hematopoietic stem cells-regulation of self-renewal is essential for efficient repopulation. Stem Cells Dev. 2009;18(3):377-385.
-
(2009)
Stem Cells Dev
, vol.18
, Issue.3
, pp. 377-385
-
-
Marciniak-Czochra, A.1
Stiehl, T.2
Ho, A.D.3
Jager, W.4
Wagner, W.5
-
27
-
-
8744305693
-
Stability analysis of models of cell production systems. Mathematical models in medicine, diseases, and epidemics. Part 2
-
Arino O, Kimmel M. Stability analysis of models of cell production systems. Mathematical models in medicine, diseases, and epidemics. Part 2. Math Model. 1986;7:1269-1300.
-
(1986)
Math Model
, vol.7
, pp. 1269-1300
-
-
Arino, O.1
Kimmel, M.2
-
28
-
-
58149159905
-
Network modeling of signal transduction: Establishing the global view
-
Kestler HA, Wawra C, Kracher B, Kuhl M. Network modeling of signal transduction: establishing the global view. BioEssays. 2008;30(11-12):1110-1125.
-
(2008)
BioEssays
, vol.30
, Issue.11-12
, pp. 1110-1125
-
-
Kestler, H.A.1
Wawra, C.2
Kracher, B.3
Kuhl, M.4
-
29
-
-
68749116324
-
Cell-cell interaction networks regulate blood stem and progenitor cell fate
-
Kirouac DC, Madlambayan GJ, Yu M, Sykes EA, Ito C, Zandstra PW. Cell-cell interaction networks regulate blood stem and progenitor cell fate. Mol Syst Biol. 2009;5:293.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 293
-
-
Kirouac, D.C.1
Madlambayan, G.J.2
Yu, M.3
Sykes, E.A.4
Ito, C.5
Zandstra, P.W.6
-
30
-
-
39349096526
-
Hematopoiesis: An Evolving Paradigm for Stem Cell Biology
-
DOI 10.1016/j.cell.2008.01.025, PII S0092867408001256
-
Orkin SH, Zon LI. Hematopoiesis: an evolving paradigm for stem cell biology. Cell. 2008;132(4):631-644. (Pubitemid 351260057)
-
(2008)
Cell
, vol.132
, Issue.4
, pp. 631-644
-
-
Orkin, S.H.1
Zon, L.I.2
-
31
-
-
0020609330
-
Stem cells in normal and leukemic hemopoiesis
-
Henry Stratton Lecture, 1982
-
McCulloch EA. Stem cells in normal and leukemic hemopoiesis (Henry Stratton Lecture, 1982). Blood. 1983;62(1):1-13.
-
(1983)
Blood
, vol.62
, Issue.1
, pp. 1-13
-
-
McCulloch, E.A.1
-
32
-
-
0027326375
-
Stem cell renewal and determination during clonal expansion in normal and leukaemic haemopoiesis
-
McCulloch EA. Stem cell renewal and determination during clonal expansion in normal and leukaemic haemopoiesis. Cell Prolif. 1993;26(5):399-425.
-
(1993)
Cell Prolif
, vol.26
, Issue.5
, pp. 399-425
-
-
McCulloch, E.A.1
-
33
-
-
0026736052
-
Bone marrow regeneration under cytotoxic drug regimens: Behaviour ranging from homeostasis to unpredictability in a model for hemopoietic differentiation
-
Mehr R, Agur Z. Bone marrow regeneration under cytotoxic drug regimens: behaviour ranging from homeostasis to unpredictability in a model for hemopoietic differentiation. Biosystems. 1992;26(4):231-237.
-
(1992)
Biosystems
, vol.26
, Issue.4
, pp. 231-237
-
-
Mehr, R.1
Agur, Z.2
-
34
-
-
0028534860
-
The long-term repopulating subset of hematopoietic stem cells is deterministic and isolatable by phenotype
-
Morrison SJ, Weissman IL. The long-term repopulating subset of hematopoietic stem cells is deterministic and isolatable by phenotype. Immunity. 1994;1(8):661-673. (Pubitemid 124000730)
-
(1994)
Immunity
, vol.1
, Issue.8
, pp. 661-673
-
-
Morrison, S.J.1
Weissman, I.L.2
-
35
-
-
0025786982
-
Stochastic versus deterministic in haemopoiesis: What is what?
-
Novak JP, Stewart CC. Stochastic versus deterministic in haemopoiesis: what is what? Br J Haematol. 1991;78(2):149-154.
-
(1991)
Br J Haematol
, vol.78
, Issue.2
, pp. 149-154
-
-
Novak, J.P.1
Stewart, C.C.2
-
36
-
-
0032599946
-
Stochastic model revisited
-
Ogawa M. Stochastic model revisited. Int J Hematol. 1999;69(1):2-5.
-
(1999)
Int J Hematol
, vol.69
, Issue.1
, pp. 2-5
-
-
Ogawa, M.1
-
37
-
-
27744547263
-
The marrow cell continuum: Stochastic determinism
-
Quesenberry P, Abedi M, Dooner M, et al. The marrow cell continuum: stochastic determinism. Folia Histochem Cytobiol. 2005;43(4):187-190. (Pubitemid 41582136)
-
(2005)
Folia Histochemica et Cytobiologica
, vol.43
, Issue.4
, pp. 187-190
-
-
Quesenberry, P.1
Abedi, M.2
Dooner, M.3
Colvin, G.4
Sanchez-Guijo, F.M.5
Aliotta, J.6
Pimentel, J.7
Dooner, G.8
Greer, D.9
Demers, D.10
Keaney, P.11
Peterson, A.12
Luo, L.13
Foster, B.14
-
38
-
-
0030065744
-
Evidence that hematopoiesis may be a stochastic process in vivo
-
DOI 10.1038/nm0296-190
-
Abkowitz JL, Catlin SN, Guttorp P. Evidence that hematopoiesis may be a stochastic process in vivo. Nat Med. 1996;2(2):190-197. (Pubitemid 26054982)
-
(1996)
Nature Medicine
, vol.2
, Issue.2
, pp. 190-197
-
-
Abkowitz, J.L.1
Catlin, S.N.2
Guttorp, P.3
-
39
-
-
33746040437
-
Towards an understanding of lineage specification in hematopoietic stem cells: A mathematical model for the interaction of transcription factors GATA-1 and PU.1
-
DOI 10.1016/j.jtbi.2006.01.021, PII S0022519306000348
-
Roeder I, Glauche I. Towards an understanding of lineage specification in hematopoietic stem cells: a mathematical model for the interaction of transcription factors GATA-1 and PU. 1. J Theor Biol. 2006;241(4):852-865. (Pubitemid 44080793)
-
(2006)
Journal of Theoretical Biology
, vol.241
, Issue.4
, pp. 852-865
-
-
Roeder, I.1
Glauche, I.2
-
40
-
-
70349684846
-
Integrating extrinsic and intrinsic cues into a minimal model of lineage commitment for hematopoietic progenitors
-
Palani S, Sarkar CA. Integrating extrinsic and intrinsic cues into a minimal model of lineage commitment for hematopoietic progenitors. PLoS Comput Biol. 2009;5:e1000518.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Palani, S.1
Sarkar, C.A.2
-
41
-
-
44349162752
-
Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
-
DOI 10.1038/nature06965, PII NATURE06965
-
Chang HH, Hemberg M, Barahona M, Ingber DE, Huang S. Transcriptome-wide noise controls lineage choice in mammalian progenitor cells. Nature. 2008;453(7194):544-547. (Pubitemid 351733323)
-
(2008)
Nature
, vol.453
, Issue.7194
, pp. 544-547
-
-
Chang, H.H.1
Hemberg, M.2
Barahona, M.3
Ingber, D.E.4
Huang, S.5
-
42
-
-
34248199004
-
Bifurcation dynamics in lineage-commitment in bipotent progenitor cells
-
DOI 10.1016/j.ydbio.2007.02.036, PII S0012160607001674
-
Huang S, Guo YP, May G, Enver T. Bifurcation dynamics in lineage-commitment in bipotent progenitor cells. Dev Biol. 2007;305(2):695-713. (Pubitemid 46705410)
-
(2007)
Developmental Biology
, vol.305
, Issue.2
, pp. 695-713
-
-
Huang, S.1
Guo, Y.-P.2
May, G.3
Enver, T.4
-
43
-
-
0000062301
-
Cytological demonstration of the clonal nature of spleen colonies derived from transplanted mouse marrow cells
-
Becker AJ, Mc CE, Till JE. Cytological demonstration of the clonal nature of spleen colonies derived from transplanted mouse marrow cells. Nature. 1963;197:452-454.
-
(1963)
Nature
, vol.197
, pp. 452-454
-
-
Becker, A.J.1
Mc, C.E.2
Till, J.E.3
-
44
-
-
0000461656
-
The distribution of colony-forming cells among spleen colonies
-
Siminovitch L, McCulloch EA, Till JE. The distribution of colony-forming cells among spleen colonies. J Cell Physiol. 1963;62:327-336.
-
(1963)
J Cell Physiol
, vol.62
, pp. 327-336
-
-
Siminovitch, L.1
McCulloch, E.A.2
Till, J.E.3
-
45
-
-
67650418221
-
Hematopoietic cytokines can instruct lineage choice
-
Rieger MA, Hoppe PS, Smejkal BM, Eitelhuber AC, Schroeder T. Hematopoietic cytokines can instruct lineage choice. Science. 2009;325(5937):217-218.
-
(2009)
Science
, vol.325
, Issue.5937
, pp. 217-218
-
-
Rieger, M.A.1
Hoppe, P.S.2
Smejkal, B.M.3
Eitelhuber, A.C.4
Schroeder, T.5
-
47
-
-
0025221852
-
Evidence for the maintenance of hematopoiesis in a large animal by the sequential activation of stem-cell clones
-
Abkowitz JL, Linenberger ML, Newton MA, Shelton GH, Ott RL, Guttorp P. Evidence for the maintenance of hematopoiesis in a large animal by the sequential activation of stem-cell clones. Proc Natl Acad Sci U S A. 1990;87(22):9062-9066. (Pubitemid 120007650)
-
(1990)
Proceedings of the National Academy of Sciences of the United States of America
, vol.87
, Issue.22
, pp. 9062-9066
-
-
Abkowitz, J.L.1
Linenberger, M.L.2
Newton, M.A.3
Shelton, G.H.4
Ott, R.L.5
Guttorp, P.6
-
50
-
-
21344452584
-
Stochastic modeling of early hematopoiesis
-
Newton MA, Guttorp P, Catlin S, Assuncao R, Abkowitz JL. Stochastic modeling of early hematopoiesis. J Am Stat Assoc. 1995;90(432):1146-1155.
-
(1995)
J Am Stat Assoc
, vol.90
, Issue.432
, pp. 1146-1155
-
-
Newton, M.A.1
Guttorp, P.2
Catlin, S.3
Assuncao, R.4
Abkowitz, J.L.5
-
51
-
-
7944237809
-
Estimating human hematopoietic stem cell kinetics using granulocyte telomere lengths
-
DOI 10.1016/j.exphem.2004.07.023, PII S0301472X04002681
-
Shepherd BE, Guttorp P, Lansdorp PM, Abkowitz JL. Estimating human hematopoietic stem cell kinetics using granulocyte telomere lengths. Exp Hematol. 2004;32(11):1040-1050. (Pubitemid 39469927)
-
(2004)
Experimental Hematology
, vol.32
, Issue.11
, pp. 1040-1050
-
-
Shepherd, B.E.1
Guttorp, P.2
Lansdorp, P.M.3
Abkowitz, J.L.4
-
52
-
-
77950680361
-
Estimating the replication rate of hematopoietic stem cells in non-human primates: A test of Hayflick's hypothesis
-
[abstract]. ASH Annual Meeting Abstracts. Abstract 1710
-
Shepherd BE, Kiem HP, Dunbar CE, et al. Estimating the replication rate of hematopoietic stem cells in non-human primates: a test of Hayflick's hypothesis [abstract]. Blood (ASH Annual Meeting Abstracts). 2005;106(11):487a. Abstract 1710.
-
(2005)
Blood
, vol.106
, Issue.11
-
-
Shepherd, B.E.1
Kiem, H.P.2
Dunbar, C.E.3
-
53
-
-
34548843607
-
Hematopoietic stem-cell behavior in nonhuman primates
-
Shepherd BE, Kiem HP, Lansdorp PM, et al. Hematopoietic stem-cell behavior in nonhuman primates. Blood. 2007;110(6):1806-1813.
-
(2007)
Blood
, vol.110
, Issue.6
, pp. 1806-1813
-
-
Shepherd, B.E.1
Kiem, H.P.2
Lansdorp, P.M.3
-
54
-
-
85117738251
-
Evidence that the number of hematopoietic stem cells (HSC) per animal is conserved in mammals
-
Abkowitz JL, Catlin SN, McCallie MT, Guttorp P. Evidence that the number of hematopoietic stem cells per animal is conserved in mammals. Blood. 2002;100(7):2665-2667. (Pubitemid 33786610)
-
(2001)
Blood
, vol.98
, Issue.11 PART I
-
-
Abkowitz, J.L.1
Catlin, S.N.2
McCallie, M.T.3
Guttorp, P.4
-
55
-
-
27144457769
-
The kinetics of clonal dominance in myeloproliferative disorders
-
DOI 10.1182/blood-2005-03-1240
-
Catlin SN, Guttorp P, Abkowitz JL. The kinetics of clonal dominance in myeloproliferative disorders. Blood. 2005;106(8):2688-2692. (Pubitemid 41510741)
-
(2005)
Blood
, vol.106
, Issue.8
, pp. 2688-2692
-
-
Catlin, S.N.1
Guttorp, P.2
Abkowitz, J.L.3
-
56
-
-
33645097646
-
Multistable and multistep dynamics in neutrophil differentiation
-
Chang HH, Oh PY, Ingber DE, Huang S. Multistable and multistep dynamics in neutrophil differentiation. BMC Cell Biol. 2006;7:11.
-
(2006)
BMC Cell Biol
, vol.7
, pp. 11
-
-
Chang, H.H.1
Oh, P.Y.2
Ingber, D.E.3
Huang, S.4
-
57
-
-
33747196725
-
Multilineage Transcriptional Priming and Determination of Alternate Hematopoietic Cell Fates
-
DOI 10.1016/j.cell.2006.06.052, PII S0092867406009809
-
Laslo P, Spooner CJ, Warmflash A, et al. Multilineage transcriptional priming and determination of alternate hematopoietic cell fates. Cell. 2006;126(4):755-766. (Pubitemid 44233633)
-
(2006)
Cell
, vol.126
, Issue.4
, pp. 755-766
-
-
Laslo, P.1
Spooner, C.J.2
Warmflash, A.3
Lancki, D.W.4
Lee, H.-J.5
Sciammas, R.6
Gantner, B.N.7
Dinner, A.R.8
Singh, H.9
-
58
-
-
50349087322
-
Positive receptor feedback during lineage commitment can generate ultrasensitivity to ligand and confer robustness to a bistable switch
-
Palani S, Sarkar CA. Positive receptor feedback during lineage commitment can generate ultrasensitivity to ligand and confer robustness to a bistable switch. Biophys J. 2008;95(4):1575-1589.
-
(2008)
Biophys J
, vol.95
, Issue.4
, pp. 1575-1589
-
-
Palani, S.1
Sarkar, C.A.2
-
59
-
-
37849046535
-
Challenges for modeling and interpreting the complex biology of severe injury and inflammation
-
Lowry SF, Calvano SE. Challenges for modeling and interpreting the complex biology of severe injury and inflammation. J Leukoc Biol. 2008;83(3):553-557.
-
(2008)
J Leukoc Biol
, vol.83
, Issue.3
, pp. 553-557
-
-
Lowry, S.F.1
Calvano, S.E.2
-
60
-
-
58849095074
-
Using systems biology to simplify complex disease: Immune cartography
-
Polpitiya AD, McDunn JE, Burykin A, Ghosh BK, Cobb JP. Using systems biology to simplify complex disease: immune cartography. Crit Care Med. 2009;37(1 suppl):S16-S21.
-
(2009)
Crit Care Med
, vol.37
, Issue.1 SUPPL.
-
-
Polpitiya, A.D.1
McDunn, J.E.2
Burykin, A.3
Ghosh, B.K.4
Cobb, J.P.5
-
61
-
-
4544238686
-
Quantitative dynamics of in vivo bone marrow neutrophil production and egress in response to injury and infection
-
Rosinski M, Yarmush ML, Berthiaume F. Quantitative dynamics of in vivo bone marrow neutrophil production and egress in response to injury and infection. Ann Biomed Eng. 2004;32(8):1108-1119.
-
(2004)
Ann Biomed Eng
, vol.32
, Issue.8
, pp. 1108-1119
-
-
Rosinski, M.1
Yarmush, M.L.2
Berthiaume, F.3
-
62
-
-
22144464423
-
Inflammation suppressor genes: Please switch out all the lights
-
DOI 10.1189/jlb.1204710
-
Wells CA, Ravasi T, Hume DA. Inflammation suppressor genes: please switch out all the lights. J Leukoc Biol. 2005;78(1):9-13. (Pubitemid 40979938)
-
(2005)
Journal of Leukocyte Biology
, vol.78
, Issue.1
, pp. 9-13
-
-
Wells, C.A.1
Ravasi, T.2
Hume, D.A.3
-
63
-
-
27144509163
-
A network-based analysis of systemic inflammation in humans
-
DOI 10.1038/nature03985, PII N03985
-
Calvano SE, Xiao W, Richards DR, et al. A network-based analysis of systemic inflammation in humans. Nature. 2005;437(7061):1032-1037. (Pubitemid 41486985)
-
(2005)
Nature
, vol.437
, Issue.7061
, pp. 1032-1037
-
-
Calvano, S.E.1
Xiao, W.2
Richards, D.R.3
Felciano, R.M.4
Baker, H.V.5
Cho, R.J.6
Chen, R.O.7
Brownstein, B.H.8
Cobb, J.P.9
Tschoeke, S.K.10
Miller-Graziano, C.11
Moldawer, L.L.12
Mindrinos, M.N.13
Davis, R.W.14
Tompkins, R.G.15
Lowry, S.F.16
-
64
-
-
0031835957
-
Regulation of transcription by hypoxia requires a multiprotein complex that includes hypoxia-inducible factor 1, an adjacent transcription factor, and p300/CREB binding protein
-
Ebert BL, Bunn HF. Regulation of transcription by hypoxia requires a multiprotein complex that includes hypoxia-inducible factor 1, an adjacent transcription factor, and p300/CREB binding protein. Mol Cell Biol. 1998;18(7):4089-4096.
-
(1998)
Mol Cell Biol
, vol.18
, Issue.7
, pp. 4089-4096
-
-
Ebert, B.L.1
Bunn, H.F.2
-
65
-
-
35649000051
-
Negative autoregulation by FAS mediates robust fetal erythropoiesis
-
DOI 10.1371/journal.pbio.0050252
-
Socolovsky M, Murrell M, Liu Y, Pop R, Porpiglia E, Levchenko A. Negative autoregulation by FAS mediates robust fetal erythropoiesis. PLoS Biol. 2007;5(10):e252. (Pubitemid 350035430)
-
(2007)
PLoS Biology
, vol.5
, Issue.10
, pp. 2296-2311
-
-
Socolovsky, M.1
Murrell, M.2
Liu, Y.3
Pop, R.4
Porpiglia, E.5
Levchenko, A.6
-
66
-
-
59649113905
-
Dynamic hematological disease: A review
-
Foley C, Mackey MC. Dynamic hematological disease: a review. J Math Biol. 2009;58(1-2):285-322.
-
(2009)
J Math Biol
, vol.58
, Issue.1-2
, pp. 285-322
-
-
Foley, C.1
Mackey, M.C.2
-
67
-
-
0014665122
-
Erythropoiesis in the dog: The periodic nature of the steady state
-
Morley A, Stohlman F Jr. Erythropoiesis in the dog: the periodic nature of the steady state. Science. 1969;165(897):1025-1027.
-
(1969)
Science
, vol.165
, Issue.897
, pp. 1025-1027
-
-
Morley, A.1
Stohlman Jr., F.2
-
68
-
-
0029015655
-
The effect of continuous G-CSF application in human cyclic neutropenia: A model analysis
-
Schmitz S, Franke H, Wichmann HE, Diehl V. The effect of continuous G-CSF application in human cyclic neutropenia: a model analysis. Br J Haematol. 1995;90(1):41-47.
-
(1995)
Br J Haematol
, vol.90
, Issue.1
, pp. 41-47
-
-
Schmitz, S.1
Franke, H.2
Wichmann, H.E.3
Diehl, V.4
-
69
-
-
0037678721
-
Oscillations in cyclical neutropenia: New evidence based on mathematical modeling
-
DOI 10.1016/S0022-5193(03)00090-0
-
Bernard S, Belair J, Mackey MC. Oscillations in cyclical neutropenia: new evidence based on mathematical modeling. J Theor Biol. 2003;223(3):283-298. (Pubitemid 36808924)
-
(2003)
Journal of Theoretical Biology
, vol.223
, Issue.3
, pp. 283-298
-
-
Bernard, S.1
Belair, J.2
Mackey, M.C.3
-
70
-
-
0001995554
-
Mathematical problems of the dynamics of a system of red blood cells
-
Polish
-
Wazewska-Czyzewska M, Lasota A. [Mathematical problems of the dynamics of a system of red blood cells] (Polish). Math Stos III. 1976;6:23-40.
-
(1976)
Math Stos III
, vol.6
, pp. 23-40
-
-
Wazewska-Czyzewska, M.1
Lasota, A.2
-
71
-
-
77950672753
-
Stochastic approach to the process of red cell destruction
-
Kimmel M, Wazewska-Czyzewska M. Stochastic approach to the process of red cell destruction. Zastos Mat. 1982;17:217-225.
-
(1982)
Zastos Mat
, vol.17
, pp. 217-225
-
-
Kimmel, M.1
Wazewska-Czyzewska, M.2
-
72
-
-
0018570535
-
Periodic auto-immune hemolytic anemia: An induced dynamical disease
-
Mackey MC. Periodic auto-immune hemolytic anemia: an induced dynamical disease. Bull Math Biol. 1979;41(6):829-834.
-
(1979)
Bull Math Biol
, vol.41
, Issue.6
, pp. 829-834
-
-
Mackey, M.C.1
-
73
-
-
0032554028
-
Hematopoietic model with moving boundary condition and state dependent delay: Applications in erythropoiesis
-
DOI 10.1006/jtbi.1997.0537
-
Mahaffy JM, Belair J, Mackey MC. Hematopoietic model with moving boundary condition and state dependent delay: applications in erythropoiesis. J Theor Biol. 1998;190(2):135-146. (Pubitemid 28108032)
-
(1998)
Journal of Theoretical Biology
, vol.190
, Issue.2
, pp. 135-146
-
-
Mahaffy, J.M.1
Belair, J.2
Mackey, M.C.3
-
74
-
-
0029025412
-
Age-structured and two-delay models for erythropoiesis
-
Belair J, Mackey MC, Mahaffy JM. Age-structured and two-delay models for erythropoiesis. Math Biosci. 1995;128(1-2):317-346.
-
(1995)
Math Biosci
, vol.128
, Issue.1-2
, pp. 317-346
-
-
Belair, J.1
Mackey, M.C.2
Mahaffy, J.M.3
-
76
-
-
34249034981
-
G-CSF treatment of canine cyclical neutropenia: A comprehensive mathematical model
-
DOI 10.1016/j.exphem.2007.02.015, PII S0301472X07001580
-
Colijn C, Foley C, Mackey MC. G-CSF treatment of canine cyclical neutropenia: a comprehensive mathematical model. Exp Hematol. 2007;35(6):898-907. (Pubitemid 46802982)
-
(2007)
Experimental Hematology
, vol.35
, Issue.6
, pp. 898-907
-
-
Colijn, C.1
Foley, C.2
Mackey, M.C.3
-
77
-
-
0017137698
-
A mathematical model of the chemotherapeutic treatment of acute myeloblastic leukemia
-
Rubinow SI, Lebowitz JL. A mathematical model of the chemotherapeutic treatment of acute myeloblastic leukemia. Biophys J. 1976;16(11):1257-1271.
-
(1976)
Biophys J
, vol.16
, Issue.11
, pp. 1257-1271
-
-
Rubinow, S.I.1
Lebowitz, J.L.2
-
78
-
-
0017062768
-
A mathematical model of the acute myeloblastic leukemic state in man
-
Rubinow SI, Lebowitz JL. A mathematical model of the acute myeloblastic leukemic state in man. Biophys J. 1976;16(8):897-910.
-
(1976)
Biophys J
, vol.16
, Issue.8
, pp. 897-910
-
-
Rubinow, S.I.1
Lebowitz, J.L.2
-
79
-
-
0016318184
-
A mathematical model of neutrophil production and control in normal man
-
Rubinow SI, Lebowitz JL. A mathematical model of neutrophil production and control in normal man. J Math Biol. 1975;1:187.
-
(1975)
J Math Biol
, vol.1
, pp. 187
-
-
Rubinow, S.I.1
Lebowitz, J.L.2
-
80
-
-
33750733928
-
Modelling hematopoiesis mediated by growth factors with applications to periodic hematological diseases
-
Adimy M, Crauste F, Ruan S. Modelling hematopoiesis mediated by growth factors with applications to periodic hematological diseases. Bull Math Biol. 2006;68(8):2321-2351.
-
(2006)
Bull Math Biol
, vol.68
, Issue.8
, pp. 2321-2351
-
-
Adimy, M.1
Crauste, F.2
Ruan, S.3
-
82
-
-
0028000668
-
Mice lacking granulocyte colony-stimulating factor have chronic neutropenia, granulocyte and macrophage progenitor cell deficiency, and impaired neutrophil mobilization
-
Lieschke GJ, Grail D, Hodgson G, et al. Mice lacking granulocyte colony-stimulating factor have chronic neutropenia, granulocyte and macrophage progenitor cell deficiency, and impaired neutrophil mobilization. Blood. 1994;84(6):1737-1746. (Pubitemid 24286121)
-
(1994)
Blood
, vol.84
, Issue.6
, pp. 1737-1746
-
-
Lieschke, G.J.1
Grail, D.2
Hodgson, G.3
Metcalf, D.4
Stanley, E.5
Cheers, C.6
Fowler, K.J.7
Basu, S.8
Zhan, Y.F.9
Dunn, A.R.10
-
83
-
-
0033180176
-
A role for G-CSF receptor signaling in the regulation of hematopoietic cell function but not lineage commitment or differentiation
-
DOI 10.1016/S1074-7613(00)80090-4
-
Semerad CL, Poursine-Laurent J, Liu F, Link DC. A role for G-CSF receptor signaling in the regulation of hematopoietic cell function but not lineage commitment or differentiation. Immunity. 1999;11(2):153-161. (Pubitemid 29428808)
-
(1999)
Immunity
, vol.11
, Issue.2
, pp. 153-161
-
-
Semerad, C.L.1
Poursine-Laurent, J.2
Liu, F.3
Link, D.C.4
-
84
-
-
3242683136
-
+ cell mobilization into the peripheral blood
-
DOI 10.1111/j.1365-2184.2004.00312.x
-
Obeyesekere MN, Berry RW, Spicer PP, Korbling M. A mathematical model of haemopoiesis as exemplified by CD34(+) cell mobilization into the peripheral blood. Cell Prolif. 2004;37(4):279-294. (Pubitemid 38951774)
-
(2004)
Cell Proliferation
, vol.37
, Issue.4
, pp. 279-294
-
-
Obeyesekere, M.N.1
Berry, R.W.2
Spicer, P.P.3
Korbling, M.4
-
85
-
-
0032841520
-
Circadian variation of granulocyte colony stimulating factor levels in man
-
DOI 10.1046/j.1365-2141.1999.01543.x
-
Jilma B, Hergovich N, Stohlawetz P, Eichler HG, Bauer P, Wagner OF. Circadian variation of granulocyte colony stimulating factor levels in man. Br J Haematol. 1999;106(2):368-370. (Pubitemid 29450658)
-
(1999)
British Journal of Haematology
, vol.106
, Issue.2
, pp. 368-370
-
-
Jilma, B.1
Hergovich, N.2
Stohlawetz, P.3
Eichler, H.-G.4
Bauer, P.5
Wagner, O.F.6
-
86
-
-
34548669656
-
G-CSF control of neutrophils dynamics in the blood
-
DOI 10.1007/s11538-007-9221-1
-
Shochat E, Rom-Kedar V, Segel LA. G-CSF control of neutrophils dynamics in the blood. Bull Math Biol. 2007;69(7):2299-2338. (Pubitemid 47415555)
-
(2007)
Bulletin of Mathematical Biology
, vol.69
, Issue.7
, pp. 2299-2338
-
-
Shochat, E.1
Rom-Kedar, V.2
Segel, L.A.3
-
87
-
-
21744450789
-
Chronic myeloid leukaemia: Stem cell derived but progenitor cell driven
-
Marley SB, Gordon MY. Chronic myeloid leukaemia: stem cell derived but progenitor cell driven. Clin Sci (Lond). 2005;109(1):13-25.
-
(2005)
Clin Sci (Lond)
, vol.109
, Issue.1
, pp. 13-25
-
-
Marley, S.B.1
Gordon, M.Y.2
-
88
-
-
0037222528
-
Cell-level pharmacokinetic model of granulocyte colony-stimulating factor: Implications for ligand lifetime and potency in vivo
-
Sarkar CA, Lauffenburger DA. Cell-level pharmacokinetic model of granulocyte colony-stimulating factor: implications for ligand lifetime and potency in vivo. Mol Pharmacol. 2003;63(1):147-158.
-
(2003)
Mol Pharmacol
, vol.63
, Issue.1
, pp. 147-158
-
-
Sarkar, C.A.1
Lauffenburger, D.A.2
-
89
-
-
15244348269
-
The complex effect of granulocyte colony-stimulating factor on human granulopoiesis analyzed by a new physiologically-based mathematical model
-
DOI 10.1016/j.jtbi.2004.11.026
-
Vainstein V, Ginosar Y, Shoham M, Ranmar DO, Ianovski A, Agur Z. The complex effect of granulocyte colony-stimulating factor on human granulopoiesis analyzed by a new physiologically-based mathematical model. J Theor Biol. 2005;234(3):311-327. (Pubitemid 40387457)
-
(2005)
Journal of Theoretical Biology
, vol.234
, Issue.3
, pp. 311-327
-
-
Vainstein, V.1
Ginosar, Y.2
Shoham, M.3
Ranmar, D.O.4
Ianovski, A.5
Agur, Z.6
-
90
-
-
66349121917
-
Adaptive therapy
-
Gatenby RA, Silva AS, Gillies RJ, Frieden BR. Adaptive therapy. Cancer Res. 2009;69(11):4894-4903.
-
(2009)
Cancer Res
, vol.69
, Issue.11
, pp. 4894-4903
-
-
Gatenby, R.A.1
Silva, A.S.2
Gillies, R.J.3
Frieden, B.R.4
-
91
-
-
0034619684
-
Emergence of a subpopulation in a computational model of tumor growth
-
Kansal AR, Torquato S, Chiocca EA, Deisboeck TS. Emergence of a subpopulation in a computational model of tumor growth. J Theor Biol. 2000; 207(3):431-441.
-
(2000)
J Theor Biol
, vol.207
, Issue.3
, pp. 431-441
-
-
Kansal, A.R.1
Torquato, S.2
Chiocca, E.A.3
Deisboeck, T.S.4
-
92
-
-
21744462100
-
Dynamics of chronic myeloid leukaemia
-
Michor F, Hughes TP, Iwasa Y, et al. Dynamics of chronic myeloid leukaemia. Nature. 2005;435(7046):1267-1270.
-
(2005)
Nature
, vol.435
, Issue.7046
, pp. 1267-1270
-
-
Michor, F.1
Hughes, T.P.2
Iwasa, Y.3
-
93
-
-
70349684163
-
-
Available at Accessed December 2009
-
HHMI/AAMC. Scientific Foundations for the Future Physicians. 2009. Available at www.aamc. org/scientificfoundations. Accessed December 2009.
-
(2009)
Scientific Foundations for the Future Physicians
-
-
-
95
-
-
33750354315
-
Back to the future: Education for systems-level biologists
-
DOI 10.1038/nrm2023, PII NRM2023
-
Wingreen N, Botstein D. Back to the future: education for systems-level biologists. Nat Rev Mol Cell Biol. 2006;7(11):829-832. (Pubitemid 44627476)
-
(2006)
Nature Reviews Molecular Cell Biology
, vol.7
, Issue.11
, pp. 829-832
-
-
Wingreen, N.1
Botstein, D.2
-
97
-
-
33746595848
-
Key role of local regulation in chemosensing revealed by a new molecular interaction-based modeling method
-
DOI 10.1371/journal.pcbi.0020082
-
Meier-Schellersheim M, Xu X, Angermann B, Kunkel EJ, Jin T, Germain RN. Key role of local regulation in chemosensing revealed by a new molecular interaction-based modeling method. PLoS Comput Biol. 2006;2(7):e82. (Pubitemid 44147382)
-
(2006)
PLoS Computational Biology
, vol.2
, Issue.7
, pp. 710-724
-
-
Meier-Schellersheim, M.1
Xu, X.2
Angermann, B.3
Kunkel, E.J.4
Jin, T.5
Germain, R.N.6
-
98
-
-
65649138437
-
Computational modeling of biochemical networks using COPASI
-
Mendes P, Hoops S, Sahle S, Gauges R, Dada J, Kummer U. Computational modeling of biochemical networks using COPASI. Methods Mol Biol. 2009;500:17-59.
-
(2009)
Methods Mol Biol
, vol.500
, pp. 17-59
-
-
Mendes, P.1
Hoops, S.2
Sahle, S.3
Gauges, R.4
Dada, J.5
Kummer, U.6
-
99
-
-
34848875114
-
Bioinformatics
-
Moore JH. Bioinformatics. J Cell Physiol. 2007; 213(2):365-369.
-
(2007)
J Cell Physiol
, vol.213
, Issue.2
, pp. 365-369
-
-
Moore, J.H.1
|