The human red blood cell proteome and interactome

Experimental Biology and Medicine

Volumn 232, Issue 11, 2007, Pages 1391-1408

  Goodman, Steven R ^a,b,d   Kurdia, Anastasia ^c   Ammann, Larry ^a   Kakhniashvili, David ^a   Daescu, Ovidiu ^c  

^a UNIVERSITY OF TEXAS AT DALLAS   (United States)

^b UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

^c Department of Electrical and Computer Engineering   (United States)

^d NONE   (United States)

Author keywords

Erythrocyte; Interactome; Proteomics; Red blood cell; Sickle Cell Disease; Systems biology

Indexed keywords

CELL PROTEIN; PROTEOME;

COMPUTER MODEL; CONTROLLED STUDY; ERYTHROCYTE; HUMAN; HUMAN CELL; NUCLEOTIDE SEQUENCE; PROTEIN ANALYSIS; PROTEOMICS; SHORT SURVEY;

ANEMIA, SICKLE CELL; DIAGNOSIS, DIFFERENTIAL; ERYTHROCYTES; GENE THERAPY; HUMANS; PROTEOME; PROTEOMICS;

EID: 36849061166     PISSN: 15353702     EISSN: 15353699     Source Type: Journal    
DOI: 10.3181/0706-MR-156     Document Type: Short Survey

References (39)

1. Goodman SR, Shiffer K. The spectrin membrane skeleton of normal and abnormal human erythrocytes: A review. The American Journal of Physiology 244(3):C121-141, 1983.
2. Goodman SR, Krebs KE, Whitfield CF, Riederer BM, Zagon IS. Spectrin and related molecules. CRC Critical Reviews in Biochemistry 23(2):171-234, 1988.
3. Bennett V, Lambert S. The spectrin skeleton: From red cells to brain. Journal of Clinical Investigation 87(5):1483-1489, 1991.
4. Hsu YJ, Goodman SR. Spectrin and ubiquitination: A review. Cellular and Molecular Biology (Noisy-Le-Grand, France) Suppl 51:OL801-807, 2005.
5. Dhermy D, Schreìvel J, Lecomte M-. Spectrin-based skeleton in red blood cells and malaria. Current Opinion in Hematology 14(3):198-202, 2007.
6. Palek J, Sahr KE. Mutations of the red blood cell membrane proteins: From clinical evaluation to detection of the underlying genetic defect. Blood 80(2):308-330, 1992.
7. Delaunay J. Genetic disorders of the red cell membrane. Critical Reviews in Oncology/Hematology 19(2):79-110, 1995.
8. Iolascon A, Perrotta S, Stewart GW. Red blood cell membrane defects. Reviews in Clinical and Experimental Hematology 7(1):22-56, 2003.
9. Goodman SR. The irreversibly sickled cell: A perspective. Cellular and Molecular Biology (Noisy-Le-Grand, France) 50(1):53-58, 2004.
10. Gallagher PG. Update on the clinical spectrum and genetics of red blood cell membrane disorders. Current Hematology Reports 3(2):85-91, 2004.
11. Aebersold R, Mann M. Mass spectrometry-based proteomics. Nature 422(6928):198-207, 2003.
12. Mann M, Jensen ON. Proteomic analysis of post-translational modifications. Nature Biotechnology 21(3):255-261, 2003.
13. Steen H, Mann M. The ABC's (and XYZ's) of peptide sequencing. Nature Reviews Molecular Cell Biology 5(9):699-711, 2004.
14. Yates III JR, Gilchrist A, Howell KE, Bergeron JJM. Proteomics of organelles and large cellular structures. Nature Reviews Molecular Cell Biology 6(9):702-714, 2005.
15. Low TY, Seow TK, Chung MCM. Separation of human erythrocyte membrane associated proteins with one-dimensional and two-dimensional gel electrophoresis followed by identification with matrix-assisted laser desorption/ionization- time of flight mass spectrometry. Proteomics 2(9):1229-1239, 2002.
16. Kakhniashvili DG, Bulla Jr. LA, Goodman SR. The human erythrocyte proteome: Analysis by ion trap mass spectrometry. Molecular and Cellular Proteomics 3(5):501-509, 2004.
17. Pickart CM, Vella AT. Levels of active ubiquitin carrier proteins decline during erythroid maturation. J Biol Chem 263:12028-12035, 1988.
18. Neelam, S.N., Kakhniashvili, D.G. and Goodman S.R., The Discovery of Proteasomal Subunits in Human Erythrocytes: Relationship to Sickle Cell Disease. National Sickle Cell Disease Program. Abstract 42, 2006.
19. Tyan Y-, Jong S-, Liao J-, Liao P-, Yang M-, Liu C-, Klauser R, Himmelhaus M, Grunze M. Proteomic profiling of erythrocyte proteins by proteolytic digestion chip and identification using two-dimensional electrospray ionization tandem mass spectrometry. Journal of Proteome Research 4(3):748-757, 2005.
20. Bruschi M, Seppi C, Arena S, Musante L, Santucci L, Balduini C, Scaloni A, Lanciotti M, Righetti PG, Candiano G. Proteomic analysis of erythrocyte membranes by soft immobiline gels combined with differential protein extraction. Journal of Proteome Research 4(4):1304-1309, 2005.
21. Pasini EM, Kirkegaard M, Mortensen P, Lutz HU, Thomas AW, Mann M. In-depth analysis of the membrane and cytosolic proteome of red blood cells. Blood 108(3):791-801, 2006.
22. Chaurasia G., Iqbal, Y., Hänig, C., Herzel, H., Wanker, E. and Futschik, M. UniHI: an entry gate to the human protein interactome, Nucleic Acids Res. 35 Database issue:D590-604, 2007.
23. Balasubramanian, R., LaFramboise, T., Scholtens, D., and Gentleman, R. A graph theoretic approach to testing associations between disparate sources of functional genomics data. Bioinformatics, 20, 3353-3362, 2004.
24. R Development Core Team R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0. URL http://www.R-project.org, 2007.
25. Csardi, G. igraph: Routines for simple graphs, network analysis. R package version 0.3.3. URL: http://cneurocvs.rmki.kfki.hu/igraph, 2006.
26. Jiang M, Jia L, Jiang W, Hu X, Zhou H, Gao X, Lu Z, Zhang Z. Protein disregulation in red blood cell membranes of type 2 diabetic patients. Biochemical and Biophysical Research Communications 309(1):196-200, 2003.
27. Tonge RP, Shaw J, Middleton B, Rowlinson R, Rayner S, Young J, Pognan F, Hawkins E, Currie I, Davison M. Validation and development of fluorescence two-dimensional differential gel electrophoresis proteomics technology. Proteomics 1(3):377-396, 2001.
28. Kakhniashvili DG, Griko NB, Bulla Jr. LA, Goodman SR. The proteomics of sickle cell disease: Profiling of erythrocyte membrane proteins by 2D-DIGE and tandem mass spectrometry. Experimental Biology and Medicine 2005;230(11):787-92.
29. Goodman SR, Branton D. Spectrin binding and the control of membrane protein mobility. Journal of Supramolecular and Cellular Biochemistry 8(4):455-463, 1978.
30. Yu J, Goodman SR. Syndeins: The spectrin-binding protein(s) of the human erythrocyte membrane. Proceedings of the National Academy of Sciences of the United States of America 76(5):2340-2344, 1979.
31. Siegel DL, Goodman SR, Branton D. The effect of endogenous proteases on the spectrin binding proteins of human erythrocytes. Biochimica Et Biophysica Acta 598(3):517-527, 1980.
32. Wallin R, Culp EN, Coleman DB, Goodman SR. A structural model of human erythrocyte band 2.1: Alignment of chemical and functional domains. Proceedings of the National Academy of Sciences of the United States of America 81(13 I):4095-4099, 1984.
33. Chou J, Choudhary PK, Goodman SR. Protein profiling of sickle cell versus control rbc core membrane skeletons by icat technology and tandem mass spectrometry. Cellular and Molecular Biology Letters 11(3):326-337, 2006.
34. Gygi SP, Rist B, Gerber SA, Turecek F, Gelb MH, Aebersold R. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nature Biotechnology 17(10):994-999, 1999.
35. Ross PL, Huang YN, Marchese JN, Williamson B, Parker K, Hattan S, Khainovski N, Pillai S, Dey S, Daniels S, Purkayastha S, Juhasz P, Martin S, Bartlet-Jones M, He F, Jacobson A, Pappin DJ. Multiplexed protein quantitation in saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Molecular and Cellular Proteomics 3(12):1154-1169, 2004.
36. Prabakaran S, Wengenroth M, Lockstone HE, Lilley K, Leweke FM, Bahn S. 2-D DIGE analysis of liver and red blood cells provides further evidence for oxidative stress in schizophrenia. Journal of Proteome Research 6(1):141-149, 2007.
37. Florens L, Liu X, Wang Y, Yang S, Schwartz O, Peglar M, Carucci DJ, Yates III JR, Wu Y. Proteomics approach reveals novel proteins on the surface of malaria-infected erythrocytes. Molecular and Biochemical Parasitology 135(1):1-11, 2004.
38. Ghatpande S, Goodman SR. Protein Modifications of the Sickle Cell RBC Membrane Caused by Hydroxyurea Treatment. Sickle Cell Disease Program in press, 2007.
39. Kakhniashvili DG, Hughes KMH, Neelam S, Goodman SR, The Isolation of Reticulocyte Free Human Red Blood Cells For The Proteomic Study of Sickle Cell Disease. Sickle Cell Disease Program in press, 2007.