메뉴 건너뛰기




Volumn 6, Issue 3, 2010, Pages

Identification of the regulatory logic controlling Salmonella pathoadaptation by the SsrA-SsrB two-component system

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; COMPLEMENTARY DNA; PROTEIN SSRA; PROTEIN SSRB; UNCLASSIFIED DRUG; BACTERIAL DNA; BACTERIAL RNA; SSRB PROTEIN, SALMONELLA TYPHIMURIUM; TMRNA; TRANSCRIPTION FACTOR;

EID: 77950441670     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1000875     Document Type: Article
Times cited : (63)

References (46)
  • 1
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • DOI 10.1038/35012500
    • Ochman H, Lawrence JG, Groisman EA (2000) Lateral gene transfer and the nature of bacterial innovation. Nature 405: 299-304. (Pubitemid 30337055)
    • (2000) Nature , vol.405 , Issue.6784 , pp. 299-304
    • Ochman, H.1    Lawrence, J.G.2    Grolsman, E.A.3
  • 2
    • 33746008173 scopus 로고    scopus 로고
    • Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella
    • DOI 10.1126/science.1128794
    • Navarre WW, Porwollik S, Wang Y, McClelland M, Rosen H, et al. (2006) Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella. Science 313: 236-238. (Pubitemid 44066257)
    • (2006) Science , vol.313 , Issue.5784 , pp. 236-238
    • Navarre, W.W.1    Porwollik, S.2    Wang, Y.3    McClelland, M.4    Rosen, H.5    Libby, S.J.6    Fang, F.C.7
  • 3
    • 33748055114 scopus 로고    scopus 로고
    • H-NS mediates the silencing of laterally acquired genes in bacteria
    • doi:10.1371/journal.ppat.0020081.
    • Lucchini S, Rowley G, Goldberg MD, Hurd D, Harrison M, et al. (2006) H-NS mediates the silencing of laterally acquired genes in bacteria. PLoS Pathog 2: e81. doi:10.1371/journal.ppat.0020081.
    • (2006) PLoS Pathog , vol.2
    • Lucchini, S.1    Rowley, G.2    Goldberg, M.D.3    Hurd, D.4    Harrison, M.5
  • 5
    • 0034893582 scopus 로고    scopus 로고
    • Rapid evolution of cis-regulatory sequences via local point mutations
    • Stone JR, Wray GA (2001) Rapid evolution of cis-regulatory sequences via local point mutations. Mol Biol Evol 18: 1764-1770.
    • (2001) Mol Biol Evol , vol.18 , pp. 1764-1770
    • Stone, J.R.1    Wray, G.A.2
  • 6
    • 33646167129 scopus 로고    scopus 로고
    • Plasticity of the cisregulatory input function of a gene
    • doi:10.1371/journal.-pbio.0040045.
    • Mayo AE, Setty Y, Shavit S, Zaslaver A, Alon U (2006) Plasticity of the cisregulatory input function of a gene. PLoS Biol 4: e45. doi:10.1371/journal.- pbio.0040045.
    • (2006) PLoS Biol , vol.4
    • Mayo, A.E.1    Setty, Y.2    Shavit, S.3    Zaslaver, A.4    Alon, U.5
  • 7
  • 8
    • 67650601963 scopus 로고    scopus 로고
    • Evolution of transcriptional regulatory circuits in bacteria
    • Perez JC, Groisman EA (2009) Evolution of transcriptional regulatory circuits in bacteria. Cell 138: 233-244.
    • (2009) Cell , vol.138 , pp. 233-244
    • Perez, J.C.1    Groisman, E.A.2
  • 11
    • 33750110911 scopus 로고    scopus 로고
    • The type III secretion injectisome
    • Cornelis GR (2006) The type III secretion injectisome. Nat Rev Microbiol 4: 811-825.
    • (2006) Nat Rev Microbiol , vol.4 , pp. 811-825
    • Cornelis, G.R.1
  • 12
    • 33845249292 scopus 로고    scopus 로고
    • Protein delivery into eukaryotic cells by type III secretion machines
    • Galan JE, Wolf-Watz H (2006) Protein delivery into eukaryotic cells by type III secretion machines. Nature 444: 567-573.
    • (2006) Nature , vol.444 , pp. 567-573
    • Galan, J.E.1    Wolf-Watz, H.2
  • 13
    • 63749110404 scopus 로고    scopus 로고
    • Control of Salmonella pathogenicity island-2 gene expression
    • Fass E, Groisman EA (2009) Control of Salmonella pathogenicity island-2 gene expression. Curr Opin Microbiol 12: 199-204.
    • (2009) Curr Opin Microbiol , vol.12 , pp. 199-204
    • Fass, E.1    Groisman, E.A.2
  • 14
    • 59649095559 scopus 로고    scopus 로고
    • Coordinated regulation of virulence during systemic infection of Salmonella enterica serovar Typhimurium
    • doi:10.1371/journal.-ppat.1000306.
    • Yoon H, McDermott JE, Porwollik S, McClelland M, Heffron F (2009) Coordinated regulation of virulence during systemic infection of Salmonella enterica serovar Typhimurium. PLoS Pathog 5: e1000306. doi:10.1371/journal.- ppat.1000306.
    • (2009) PLoS Pathog , vol.5
    • Yoon, H.1    McDermott, J.E.2    Porwollik, S.3    McClelland, M.4    Heffron, F.5
  • 16
    • 28444439542 scopus 로고    scopus 로고
    • Negative regulation of Salmonella pathogenicity island 2 is required for contextual control of virulence during typhoid
    • Coombes BK, Wickham ME, Lowden MJ, Brown NF, Finlay BB (2005) Negative regulation of Salmonella pathogenicity island 2 is required for contextual control of virulence during typhoid. Proc Natl Acad Sci U S A 102: 17460-17465.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 17460-17465
    • Coombes, B.K.1    Wickham, M.E.2    Lowden, M.J.3    Brown, N.F.4    Finlay, B.B.5
  • 17
    • 77951087387 scopus 로고    scopus 로고
    • Salmonella Pathogenicity Island 2 is expressed prior to penetrating the intestine
    • doi:10.1371/journal.ppat.0010032.
    • Brown NF, Vallance BA, Coombes BK, Valdez Y, Coburn BA, et al. (2005) Salmonella Pathogenicity Island 2 is expressed prior to penetrating the intestine. PLoS Pathog 1: e32. doi:10.1371/journal.ppat.0010032.
    • (2005) PLoS Pathog , vol.1
    • Brown, N.F.1    Vallance, B.A.2    Coombes, B.K.3    Valdez, Y.4    Coburn, B.A.5
  • 18
    • 0029852315 scopus 로고    scopus 로고
    • Distribution of pathogenicity islands in Salmonella spp
    • Ochman H, Groisman EA (1996) Distribution of pathogenicity islands in Salmonella spp. Infect Immun 64: 5410-5412. (Pubitemid 26404012)
    • (1996) Infection and Immunity , vol.64 , Issue.12 , pp. 5410-5412
    • Ochman, H.1    Groisman, E.A.2
  • 20
    • 9644295735 scopus 로고    scopus 로고
    • Expression and secretion of Salmonella pathogenicity island-2 virulence genes in response to acidification exhibit differential requirements of a functional type III secretion apparatus and SsaL
    • DOI 10.1074/jbc.M404299200
    • Coombes BK, Brown NF, Valdez Y, Brumell JH, Finlay BB (2004) Expression and secretion of Salmonella pathogenicity island-2 virulence genes in response to acidification exhibit differential requirements of a functional type III secretion apparatus and SsaL. J Biol Chem 279: 49804-49815. (Pubitemid 39577786)
    • (2004) Journal of Biological Chemistry , vol.279 , Issue.48 , pp. 49804-49815
    • Coombes, B.K.1    Brown, N.F.2    Valdez, Y.3    Brumell, J.H.4    Finlay, B.B.5
  • 22
  • 24
    • 2442449227 scopus 로고    scopus 로고
    • Genomic islands in pathogenic and environmental microorganisms
    • DOI 10.1038/nrmicro884
    • Dobrindt U, Hochhut B, Hentschel U, Hacker J (2004) Genomic islands in pathogenic and environmental microorganisms. Nat Rev Microbiol 2: 414-424. (Pubitemid 39490120)
    • (2004) Nature Reviews Microbiology , vol.2 , Issue.5 , pp. 414-424
    • Dobrindt, U.1    Hochhut, B.2    Hentschel, U.3    Hacker, J.4
  • 25
    • 7644229970 scopus 로고    scopus 로고
    • The response regulator SsrB activates transcription and binds to a region overlapping OmpR binding sites at Salmonella pathogenicity island 2
    • DOI 10.1111/j.1365-2958.2004.04317.x
    • Feng X, Walthers D, Oropeza R, Kenney LJ (2004) The response regulator SsrB activates transcription and binds to a region overlapping OmpR binding sites at Salmonella pathogenicity island 2. Mol Microbiol 54: 823-835. (Pubitemid 39457301)
    • (2004) Molecular Microbiology , vol.54 , Issue.3 , pp. 823-835
    • Feng, X.1    Walthers, D.2    Oropeza, R.3    Kenney, L.J.4
  • 26
    • 34447321831 scopus 로고    scopus 로고
    • The response regulator SsrB activates expression of diverse Salmonella pathogenicity island 2 promoters and counters silencing by the nucleoid-associated protein H-NS
    • DOI 10.1111/j.1365-2958.2007.05800.x
    • Walthers D, Carroll RK, Navarre WW, Libby SJ, Fang FC, et al. (2007) The response regulator SsrB activates expression of diverse Salmonella pathogenicity island 2 promoters and counters silencing by the nucleoid-associated protein HNS. Mol Microbiol 65: 477-493. (Pubitemid 47052729)
    • (2007) Molecular Microbiology , vol.65 , Issue.2 , pp. 477-493
    • Walthers, D.1    Carroll, R.K.2    Navarre, W.W.3    Libby, S.J.4    Fang, F.C.5    Kenney, L.J.6
  • 27
    • 23444446753 scopus 로고    scopus 로고
    • A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors
    • DOI 10.1038/nbt1120
    • Meng X, Brodsky MH, Wolfe SA (2005) A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors. Nat Biotechnol 23: 988-994. (Pubitemid 41114033)
    • (2005) Nature Biotechnology , vol.23 , Issue.8 , pp. 988-994
    • Meng, X.1    Brodsky, M.H.2    Wolfe, S.A.3
  • 29
    • 33747823564 scopus 로고    scopus 로고
    • MEME: Discovering and analyzing DNA and protein sequence motifs
    • DOI 10.1093/nar/gkl198
    • Bailey TL, Williams N, Misleh C, Li WW (2006) MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res 34: W369-373. (Pubitemid 44529795)
    • (2006) Nucleic Acids Research , vol.34 , Issue.WEB. SERV. ISS
    • Bailey, T.L.1    Williams, N.2    Misleh, C.3    Li, W.W.4
  • 30
    • 0036324753 scopus 로고    scopus 로고
    • An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments
    • Liu XS, Brutlag DL, Liu JS (2002) An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments. Nat Biotechnol 20: 835-839.
    • (2002) Nat Biotechnol , vol.20 , pp. 835-839
    • Liu, X.S.1    Brutlag, D.L.2    Liu, J.S.3
  • 31
    • 32044474423 scopus 로고    scopus 로고
    • Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host
    • DOI 10.1101/gr.4106106
    • Toh H, Weiss BL, Perkin SA, Yamashita A, Oshima K, et al. (2006) Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host. Genome Res 16: 149-156. (Pubitemid 43200262)
    • (2006) Genome Research , vol.16 , Issue.2 , pp. 149-156
    • Toh, H.1    Weiss, B.L.2    Perkin, S.A.H.3    Yamashita, A.4    Oshima, K.5    Hattori, M.6    Aksoy, S.7
  • 32
    • 66449134323 scopus 로고    scopus 로고
    • Structural and functional analysis of the C-terminal DNA binding domain of the Salmonella typhimurium SPI-2 response regulator SsrB
    • Carroll RK, Liao X, Morgan LK, Cicirelli EM, Li Y, et al. (2009) Structural and functional analysis of the C-terminal DNA binding domain of the Salmonella typhimurium SPI-2 response regulator SsrB. J Biol Chem 284: 12008-12019.
    • (2009) J Biol Chem , vol.284 , pp. 12008-12019
    • Carroll, R.K.1    Liao, X.2    Morgan, L.K.3    Cicirelli, E.M.4    Li, Y.5
  • 33
    • 61449198536 scopus 로고    scopus 로고
    • Type III secretion systems in symbiotic adaptation of pathogenic and non-pathogenic bacteria
    • Coombes BK (2009) Type III secretion systems in symbiotic adaptation of pathogenic and non-pathogenic bacteria. Trends Microbiol 17: 89-94.
    • (2009) Trends Microbiol , vol.17 , pp. 89-94
    • Coombes, B.K.1
  • 34
    • 0037125995 scopus 로고    scopus 로고
    • Type III secretion systems and the evolution of mutualistic endosymbiosis
    • Dale C, Plague GR, Wang B, Ochman H, Moran NA (2002) Type III secretion systems and the evolution of mutualistic endosymbiosis. Proc Natl Acad Sci U S A 99: 12397-12402.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 12397-12402
    • Dale, C.1    Plague, G.R.2    Wang, B.3    Ochman, H.4    Moran, N.A.5
  • 35
    • 47249152834 scopus 로고    scopus 로고
    • The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions
    • Shimada T, Ishihama A, Busby SJ, Grainger DC (2008) The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions. Nucleic Acids Res 36: 3950-3955.
    • (2008) Nucleic Acids Res , vol.36 , pp. 3950-3955
    • Shimada, T.1    Ishihama, A.2    Busby, S.J.3    Grainger, D.C.4
  • 36
    • 44849093465 scopus 로고    scopus 로고
    • Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts
    • Cho BK, Knight EM, Barrett CL, Palsson BO (2008) Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts. Genome Res 18: 900-910.
    • (2008) Genome Res , vol.18 , pp. 900-910
    • Cho, B.K.1    Knight, E.M.2    Barrett, C.L.3    Palsson, B.O.4
  • 37
    • 2442701487 scopus 로고    scopus 로고
    • Expected rates and modes of evolution of enhancer sequences
    • DOI 10.1093/molbev/msh105
    • MacArthur S, Brookfield JF (2004) Expected rates and modes of evolution of enhancer sequences. Mol Biol Evol 21: 1064-1073. (Pubitemid 38658214)
    • (2004) Molecular Biology and Evolution , vol.21 , Issue.6 , pp. 1064-1073
    • MacArthur, S.1    Brookfield, J.F.Y.2
  • 38
    • 0141642027 scopus 로고    scopus 로고
    • SseG, a virulence protein that targets Salmonella to the Golgi network
    • Salcedo SP, Holden DW (2003) SseG, a virulence protein that targets Salmonella to the Golgi network. EMBO J 22: 5003-5014.
    • (2003) EMBO J , vol.22 , pp. 5003-5014
    • Salcedo, S.P.1    Holden, D.W.2
  • 39
    • 33845477449 scopus 로고    scopus 로고
    • The translocated Salmonella effector proteins SseF and SseG interact and are required to establish an intracellular replication niche
    • Deiwick J, Salcedo SP, Boucrot E, Gilliland SM, Henry T, et al. (2006) The translocated Salmonella effector proteins SseF and SseG interact and are required to establish an intracellular replication niche. Infect Immun 74: 6965-6972.
    • (2006) Infect Immun , vol.74 , pp. 6965-6972
    • Deiwick, J.1    Salcedo, S.P.2    Boucrot, E.3    Gilliland, S.M.4    Henry, T.5
  • 40
    • 33845458915 scopus 로고    scopus 로고
    • A positive feedback loop promotes transcription surge that jump-starts Salmonella virulence circuit
    • Shin D, Lee EJ, Huang H, Groisman EA (2006) A positive feedback loop promotes transcription surge that jump-starts Salmonella virulence circuit. Science 314: 1607-1609.
    • (2006) Science , vol.314 , pp. 1607-1609
    • Shin, D.1    Lee, E.J.2    Huang, H.3    Groisman, E.A.4
  • 41
    • 61449201423 scopus 로고    scopus 로고
    • IslandViewer: An integrated interface for computational identification and visualization of genomic islands
    • Langille MG, Brinkman FS (2009) IslandViewer: an integrated interface for computational identification and visualization of genomic islands. Bioinformatics 25: 664-665.
    • (2009) Bioinformatics , vol.25 , pp. 664-665
    • Langille, M.G.1    Brinkman, F.S.2
  • 45
    • 0036137323 scopus 로고    scopus 로고
    • A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling
    • Thijs G, Lescot M, Marchal K, Rombauts S, De Moor B, et al. (2001) A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling. Bioinformatics 17: 1113-1122. (Pubitemid 33735337)
    • (2001) Bioinformatics , vol.17 , Issue.12 , pp. 1113-1122
    • Thijs, G.1    Lescot, M.2    Marchal, K.3    Rombauts, S.4    De Moor, B.5    Rouze, P.6    Moreau, Y.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.