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Volumn 21, Issue 6, 2004, Pages 1064-1073

Expected rates and modes of evolution of enhancer sequences

Author keywords

Drosophila; Enhancers; Evolution

Indexed keywords

ARTICLE; BASE PAIRING; BINDING SITE; CALCULATION; DROSOPHILA MELANOGASTER; ECOLOGY; ENHANCER REGION; EVOLUTIONARY RATE; GENE EXPRESSION; GENE MUTATION; GENE SEQUENCE; GENETIC SELECTION; GENOME; MATHEMATICAL ANALYSIS; MOLECULAR EVOLUTION; MUTATION RATE; NONHUMAN; NUCLEOTIDE SEQUENCE; POPULATION SIZE; PROMOTER REGION; PROTEIN DNA INTERACTION; PROTEIN FUNCTION; PROTEIN MOTIF; SEQUENCE ANALYSIS; TARGET CELL; TIME; TRANSCRIPTION REGULATION;

EID: 2442701487     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msh105     Document Type: Article
Times cited : (47)

References (32)
  • 1
    • 0030986188 scopus 로고    scopus 로고
    • The hardwiring of development: Organization and function of genomic regulatory systems
    • Arnone, M. I., and E. H. Davidson. 1997. The hardwiring of development: Organization and function of genomic regulatory systems. Development 124:1851-1864.
    • (1997) Development , vol.124 , pp. 1851-1864
    • Arnone, M.I.1    Davidson, E.H.2
  • 3
    • 0023147228 scopus 로고
    • Selection of DNA binding sites by regulatory proteins
    • Berg, O. G., and P. H. von Hippel. 1987 Selection of DNA binding sites by regulatory proteins. J. Mol. Biol. 193:723-750.
    • (1987) J. Mol. Biol. , vol.193 , pp. 723-750
    • Berg, O.G.1    Von Hippel, P.H.2
  • 4
    • 0037035388 scopus 로고    scopus 로고
    • Evolution of functionally conserved enhancers can be accelerated in large populations: A population-genetic model
    • Carter, A. J. R., and G. P. Wagner. 2002. Evolution of functionally conserved enhancers can be accelerated in large populations: a population-genetic model. Proc. R. Soc. Lond. Ser. B-Biol. Sci. 269:953-960.
    • (2002) Proc. R. Soc. Lond. Ser. B-Biol. Sci. , vol.269 , pp. 953-960
    • Carter, A.J.R.1    Wagner, G.P.2
  • 5
    • 0033034855 scopus 로고    scopus 로고
    • Evolutionary analysis of TATA-less proximal promoter function
    • Crawford, D. L., J. A. Segal, and J. L. Barnett. 1999. Evolutionary analysis of TATA-less proximal promoter function. Mol. Biol. Evol. 16:194-207.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 194-207
    • Crawford, D.L.1    Segal, J.A.2    Barnett, J.L.3
  • 6
    • 0030893329 scopus 로고    scopus 로고
    • The evolution of apical dominance in maize
    • Doebley, J., A. Stec, and L. Hubbard. 1997. The evolution of apical dominance in maize. Nature 386:485-488.
    • (1997) Nature , vol.386 , pp. 485-488
    • Doebley, J.1    Stec, A.2    Hubbard, L.3
  • 7
    • 0027286405 scopus 로고
    • Computer-assisted prediction, classification, and delimitation of protein-binding sites in nucleic-acids
    • Frech, K., G. Herrmann, and T. Wemer. 1993. Computer-assisted prediction, classification, and delimitation of protein-binding sites in nucleic-acids. Nucl. Acids Res. 21:1655-1664.
    • (1993) Nucl. Acids Res. , vol.21 , pp. 1655-1664
    • Frech, K.1    Herrmann, G.2    Wemer, T.3
  • 8
    • 0036787402 scopus 로고    scopus 로고
    • On the selection and evolution of regulatory DNA motifs
    • Gerland, U., and T. Hwa. 2002. On the selection and evolution of regulatory DNA motifs. J. Mol. Evol. 55:386-400.
    • (2002) J. Mol. Evol. , vol.55 , pp. 386-400
    • Gerland, U.1    Hwa, T.2
  • 9
    • 2542583245 scopus 로고    scopus 로고
    • The fate of competing beneficial mutations in an asexual population
    • Gerrish, P. J., and R. E. Lenski. 1998. The fate of competing beneficial mutations in an asexual population. Genetica 103:127-144.
    • (1998) Genetica , vol.103 , pp. 127-144
    • Gerrish, P.J.1    Lenski, R.E.2
  • 10
    • 0028206856 scopus 로고
    • Specific DNA recognition and intersite spacing are critical for action of the bicoid morphogen
    • Hanes, S. D., G. Riddihough, D. Ish-Horowicz, and R. Brent. 1994. Specific DNA recognition and intersite spacing are critical for action of the bicoid morphogen. Mol. Cell. Biol. 14:3364-3375.
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 3364-3375
    • Hanes, S.D.1    Riddihough, G.2    Ish-Horowicz, D.3    Brent, R.4
  • 11
    • 0026548857 scopus 로고
    • Competition for overlapping sites in the regulatory region of the Drosophila gene Kruppel
    • Hoch, M., N. Gerwin, H. Taubert, and H. Jackle. 1992. Competition for overlapping sites in the regulatory region of the Drosophila gene Kruppel. Science 256:94-97.
    • (1992) Science , vol.256 , pp. 94-97
    • Hoch, M.1    Gerwin, N.2    Taubert, H.3    Jackle, H.4
  • 12
    • 0025861602 scopus 로고
    • Gene-expression mediated by cis-Acting sequences of the Kruppel gene in response to the Drosophila morphogens bicoid and hunchback
    • Hoch, M., E. Seifert, and H. Jackle. 1991. Gene-expression mediated by cis-Acting sequences of the Kruppel gene in response to the Drosophila morphogens bicoid and hunchback. EMBO J. 10:2267-2278.
    • (1991) EMBO J. , vol.10 , pp. 2267-2278
    • Hoch, M.1    Seifert, E.2    Jackle, H.3
  • 13
    • 0000800333 scopus 로고
    • On the probability of fixation of mutant genes in a population
    • Kimura, M. 1962. On the probability of fixation of mutant genes in a population. Genetics 47:713-719.
    • (1962) Genetics , vol.47 , pp. 713-719
    • Kimura, M.1
  • 14
    • 0032079401 scopus 로고    scopus 로고
    • The spacing between binding sites controls the mode of cooperative DNA-protein interactions: Implications for evolution of regulatory circuitry
    • Liu, Z., and J. W. Little. 1998. The spacing between binding sites controls the mode of cooperative DNA-protein interactions: implications for evolution of regulatory circuitry. J. Mol. Biol. 278:331-338.
    • (1998) J. Mol. Biol. , vol.278 , pp. 331-338
    • Liu, Z.1    Little, J.W.2
  • 15
    • 0036889175 scopus 로고    scopus 로고
    • Functional evolution of noncoding DNA
    • Ludwig, M. Z. 2002. Functional evolution of noncoding DNA. Curr. Opin. Genet. Dev. 12:634-639.
    • (2002) Curr. Opin. Genet. Dev. , vol.12 , pp. 634-639
    • Ludwig, M.Z.1
  • 16
    • 0034598832 scopus 로고    scopus 로고
    • Evidence for stabilizing selection in a eukaryotic enhancer element
    • Ludwig, M. Z., C. Bergman, N. H. Patel, and M. Kreitman. 2000. Evidence for stabilizing selection in a eukaryotic enhancer element. Nature 403:564-567.
    • (2000) Nature , vol.403 , pp. 564-567
    • Ludwig, M.Z.1    Bergman, C.2    Patel, N.H.3    Kreitman, M.4
  • 17
    • 0031889035 scopus 로고    scopus 로고
    • Functional analysis of eve stripe 2 enhancer evolution in Drosophila: Rules governing conservation and change
    • Ludwig, M. Z., N. H. Patel, and M. Kreitman. 1998. Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change. Development 125:949-958.
    • (1998) Development , vol.125 , pp. 949-958
    • Ludwig, M.Z.1    Patel, N.H.2    Kreitman, M.3
  • 18
    • 0028121003 scopus 로고
    • Cooperative DNA-protein interactions effects of changing the spacing between adjacent binding-sites
    • Mao, C. H., N. G. Carlson, and J. W. Little. 1994. Cooperative DNA-protein interactions effects of changing the spacing between adjacent binding-sites. J. Mol. Biol. 235:532-544.
    • (1994) J. Mol. Biol. , vol.235 , pp. 532-544
    • Mao, C.H.1    Carlson, N.G.2    Little, J.W.3
  • 19
    • 0036122720 scopus 로고    scopus 로고
    • Extraction of functional binding sites from unique regulatory regions: The Drosophila early developmental enhancers
    • Papatsenko, D. A., V. J. Makeev, A. P. Lifanov, M. Regnier, A. G. Nazina, and C. Desplan. 2002. Extraction of functional binding sites from unique regulatory regions: the Drosophila early developmental enhancers. Genome Res. 12:470-481.
    • (2002) Genome Res. , vol.12 , pp. 470-481
    • Papatsenko, D.A.1    Makeev, V.J.2    Lifanov, A.P.3    Regnier, M.4    Nazina, A.G.5    Desplan, C.6
  • 20
    • 0028971143 scopus 로고
    • MatInd and MatInspector: New fast and versatile tools for detection of consensus matches in nucleotide sequence data
    • Quandt, K., K. Frech, H. Karas, E. Wingender, and T. Werner. 1995. MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucl. Acids Res. 23:4878-4884.
    • (1995) Nucl. Acids Res. , vol.23 , pp. 4878-4884
    • Quandt, K.1    Frech, K.2    Karas, H.3    Wingender, E.4    Werner, T.5
  • 21
    • 0036855185 scopus 로고    scopus 로고
    • Abundant raw material for cis-regulatory evolution in humans
    • Rockman, M. V., and G. A. Wray. 2002. Abundant raw material for cis-regulatory evolution in humans. Mol. Biol. Evol. 19:1991-2004.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 1991-2004
    • Rockman, M.V.1    Wray, G.A.2
  • 22
    • 0026542473 scopus 로고
    • Slippage synthesis of simple sequence DNA
    • Schlotterer, C., and D. Tautz. 1992. Slippage synthesis of simple sequence DNA. Nucl. Acids Res. 20:211-215.
    • (1992) Nucl. Acids Res. , vol.20 , pp. 211-215
    • Schlotterer, C.1    Tautz, D.2
  • 23
    • 1842407790 scopus 로고    scopus 로고
    • Structural and functional differences in the promoter and 5′ flanking region of Ldh-B within and between populations of the teleost Fundulus heteroclitus
    • Schulte, P. M., M. Gomez-Chiarri, and D. A. Powers. 1997. Structural and functional differences in the promoter and 5′ flanking region of Ldh-B within and between populations of the teleost Fundulus heteroclitus. Genetics 145:759-769.
    • (1997) Genetics , vol.145 , pp. 759-769
    • Schulte, P.M.1    Gomez-Chiarri, M.2    Powers, D.A.3
  • 24
    • 0033280322 scopus 로고    scopus 로고
    • Functional analyses of natural variation in Sp1 binding sites of a TATA-less promoter
    • Segal, J. A., J. L. Barnett, and D. L. Crawford. 1999. Functional analyses of natural variation in Sp1 binding sites of a TATA-less promoter. J. Mol. Evol. 49:736-749.
    • (1999) J. Mol. Evol. , vol.49 , pp. 736-749
    • Segal, J.A.1    Barnett, J.L.2    Crawford, D.L.3
  • 26
    • 0034893582 scopus 로고    scopus 로고
    • Rapid evolution of cis-regulatory sequences via local point mutations
    • Stone, J. R., and G. A. Wray. 2001. Rapid evolution of cis-regulatory sequences via local point mutations. Mol. Biol. Evol. 18:1764-1770.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1764-1770
    • Stone, J.R.1    Wray, G.A.2
  • 27
    • 0032032780 scopus 로고    scopus 로고
    • Specificity, free energy and information content in protein-DNA interactions
    • Stormo, G. D., and D. S. Fields. 1998 Specificity, free energy and information content in protein-DNA interactions. Trends Biochem. Sci. 23:109-113.
    • (1998) Trends Biochem. Sci. , vol.23 , pp. 109-113
    • Stormo, G.D.1    Fields, D.S.2
  • 28
    • 0033858908 scopus 로고    scopus 로고
    • Evolution of transcriptional regulation
    • Tautz, D. 2000. Evolution of transcriptional regulation. Curr. Opin. Genet. Dev. 10:575-579.
    • (2000) Curr. Opin. Genet. Dev. , vol.10 , pp. 575-579
    • Tautz, D.1
  • 29
    • 0022533981 scopus 로고
    • Cryptic simplicity in DNA is a major source of genetic-variation
    • Tautz, D., M. Trick, and G. A. Dover. 1986. Cryptic simplicity in DNA is a major source of genetic-variation. Nature 322:652-656.
    • (1986) Nature , vol.322 , pp. 652-656
    • Tautz, D.1    Trick, M.2    Dover, G.A.3
  • 30
    • 0031937750 scopus 로고    scopus 로고
    • A regulatory element of the empty spiracles homeobox gene is composed of three distinct conserved regions that bind regulatory proteins
    • Taylor, H. S. 1998. A regulatory element of the empty spiracles homeobox gene is composed of three distinct conserved regions that bind regulatory proteins. Mol. Reprod. Dev. 49:246-253.
    • (1998) Mol. Reprod. Dev. , vol.49 , pp. 246-253
    • Taylor, H.S.1
  • 31
    • 0035172256 scopus 로고    scopus 로고
    • The TRANSFAC system on gene expression regulation
    • Wingender, E., X. Chen, E. Fricke et al. (14 coauthors). 2001. The TRANSFAC system on gene expression regulation. Nucl. Acids Res. 29:281-283.
    • (2001) Nucl. Acids Res. , vol.29 , pp. 281-283
    • Wingender, E.1    Chen, X.2    Fricke, E.3


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