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Volumn 23, Issue 8, 2005, Pages 988-994

A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors

Author keywords

[No Author keywords available]

Indexed keywords

BIOTECHNOLOGY; DATA PROCESSING; DNA; GENES; INFORMATION ANALYSIS;

EID: 23444446753     PISSN: 10870156     EISSN: None     Source Type: Journal    
DOI: 10.1038/nbt1120     Document Type: Article
Times cited : (162)

References (30)
  • 1
    • 0037154273 scopus 로고    scopus 로고
    • Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome
    • Berman, B.P. et al. Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome. Proc. Natl. Acad. Sci. USA 99, 757-762 (2002).
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 757-762
    • Berman, B.P.1
  • 2
    • 0036022523 scopus 로고    scopus 로고
    • High-throughput SELEX-SAGE method for quantitative modeling of transcription-factor binding sites
    • Roulet, E. et al. High-throughput SELEX-SAGE method for quantitative modeling of transcription-factor binding sites. Nat. Biotechnol. 20, 831-835 (2002).
    • (2002) Nat. Biotechnol. , vol.20 , pp. 831-835
    • Roulet, E.1
  • 3
    • 0035912721 scopus 로고    scopus 로고
    • Exploring the DNA-binding specificities of zinc fingers with DNA microarrays
    • Bulyk, M.L., Huang, X., Choo, Y. & Church, G.M. Exploring the DNA-binding specificities of zinc fingers with DNA microarrays. Proc. Natl. Acad. Sci. USA 98, 7158-7163 (2001).
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 7158-7163
    • Bulyk, M.L.1    Huang, X.2    Choo, Y.3    Church, G.M.4
  • 4
    • 9644268153 scopus 로고    scopus 로고
    • Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays
    • Mukherjee, S. et al. Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays. Nat. Genet. 36, 1331-1339 (2004).
    • (2004) Nat. Genet. , vol.36 , pp. 1331-1339
    • Mukherjee, S.1
  • 5
    • 0037174671 scopus 로고    scopus 로고
    • Transcriptional regulatory networks in Saccharomyces cerevisiae
    • Lee, T.I. et al. Transcriptional regulatory networks in Saccharomyces cerevisiae. Science 298, 799-804 (2002).
    • (2002) Science , vol.298 , pp. 799-804
    • Lee, T.I.1
  • 6
    • 15544375816 scopus 로고    scopus 로고
    • DIP-chip: Rapid and accurate determination of DNA-binding specificity
    • Liu, X., Noll, D.M., Lieb, J.D. & Clarke, N.D. DIP-chip: rapid and accurate determination of DNA-binding specificity. Genome Res. 15, 421-427 (2005).
    • (2005) Genome Res. , vol.15 , pp. 421-427
    • Liu, X.1    Noll, D.M.2    Lieb, J.D.3    Clarke, N.D.4
  • 7
    • 0026434553 scopus 로고
    • Identification of the DNA binding site for NGFI-B by genetic selection in yeast
    • Wilson, T.E., Fahrner, T.J., Johnston, M. & Milbrandt, J. Identification of the DNA binding site for NGFI-B by genetic selection in yeast. Science 252, 1296-1300 (1991).
    • (1991) Science , vol.252 , pp. 1296-1300
    • Wilson, T.E.1    Fahrner, T.J.2    Johnston, M.3    Milbrandt, J.4
  • 8
    • 7444267933 scopus 로고    scopus 로고
    • A gateway-compatible yeast one-hybrid system
    • Deplancke, B., Dupuy, D., Vidal, M. & Walhout, A.J. A gateway-compatible yeast one-hybrid system. Genome Res. 14, 2093-2101 (2004).
    • (2004) Genome Res. , vol.14 , pp. 2093-2101
    • Deplancke, B.1    Dupuy, D.2    Vidal, M.3    Walhout, A.J.4
  • 9
    • 0034691202 scopus 로고    scopus 로고
    • A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions
    • Joung, J.K., Ramm, E.I. & Pabo, C.O. A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions. Proc. Natl. Acad. Sci. USA 97, 7382-7387 (2000).
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 7382-7387
    • Joung, J.K.1    Ramm, E.I.2    Pabo, C.O.3
  • 10
    • 0030907304 scopus 로고    scopus 로고
    • Activation of prokaryotic transcription through arbitrary protein-protein contacts
    • Dove, S.L., Joung, J.K. & Hochschild, A. Activation of prokaryotic transcription through arbitrary protein-protein contacts. Nature 386, 627-630 (1997).
    • (1997) Nature , vol.386 , pp. 627-630
    • Dove, S.L.1    Joung, J.K.2    Hochschild, A.3
  • 11
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey, T.L. & Elkan, C. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol. 2, 28-36 (1994).
    • (1994) Proc. Int. Conf. Intell. Syst. Mol. Biol. , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 12
    • 0033524954 scopus 로고    scopus 로고
    • Analysis of zinc fingers optimized via phage display: Evaluating the utility of a recognition code
    • Wolfe, S.A., Greisman, H.A., Ramm, E.I. & Pabo, C.O. Analysis of zinc fingers optimized via phage display: evaluating the utility of a recognition code. J. Mol. Biol. 285, 1917-1934 (1999).
    • (1999) J. Mol. Biol. , vol.285 , pp. 1917-1934
    • Wolfe, S.A.1    Greisman, H.A.2    Ramm, E.I.3    Pabo, C.O.4
  • 13
    • 0033977348 scopus 로고    scopus 로고
    • PLAG1, the main translocation target in pleomorphic adenoma of the salivary glands, is a positive regulator of IGF-II
    • Voz, M.L., Agten, N.S., Van de Ven, W.J., & Kas, K. PLAG1, the main translocation target in pleomorphic adenoma of the salivary glands, is a positive regulator of IGF-II. Cancer Res. 60, 106-113 (2000).
    • (2000) Cancer Res. , vol.60 , pp. 106-113
    • Voz, M.L.1    Agten, N.S.2    Van De Ven, W.J.3    Kas, K.4
  • 14
    • 0032703169 scopus 로고    scopus 로고
    • A genetic strategy to eliminate self-activator baits prior to high-throughput yeast two-hybrid screens
    • Walhout, A.J. & Vidal, M. A genetic strategy to eliminate self-activator baits prior to high-throughput yeast two-hybrid screens. Genome Res. 9, 1128-1134 (1999).
    • (1999) Genome Res. , vol.9 , pp. 1128-1134
    • Walhout, A.J.1    Vidal, M.2
  • 15
    • 0031053362 scopus 로고    scopus 로고
    • A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites
    • Greisman, H.A. & Pabo, C.O. A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites. Science 275, 657-661 (1997).
    • (1997) Science , vol.275 , pp. 657-661
    • Greisman, H.A.1    Pabo, C.O.2
  • 16
    • 1642368138 scopus 로고    scopus 로고
    • Immunity regulatory DNAs share common organizational features in Drosophila
    • Senger, K. et al. Immunity regulatory DNAs share common organizational features in Drosophila. Mol. Cell 13, 19-32 (2004).
    • (2004) Mol. Cell , vol.13 , pp. 19-32
    • Senger, K.1
  • 17
    • 4644317278 scopus 로고    scopus 로고
    • Crystal structure of the nuclear effector of Notch signaling, CSL, bound to DNA
    • Kovall, R.A. & Hendrickson, W.A. Crystal structure of the nuclear effector of Notch signaling, CSL, bound to DNA. EMBO J. 23, 3441-3451 (2004).
    • (2004) EMBO J. , vol.23 , pp. 3441-3451
    • Kovall, R.A.1    Hendrickson, W.A.2
  • 18
    • 0028232358 scopus 로고
    • Recognition sequence of a highly conserved DNA binding protein RBP-J kappa
    • Tun, T. et al. Recognition sequence of a highly conserved DNA binding protein RBP-J kappa. Nucleic Acids Res. 22, 965-971 (1994).
    • (1994) Nucleic Acids Res. , vol.22 , pp. 965-971
    • Tun, T.1
  • 19
    • 0029837282 scopus 로고    scopus 로고
    • Cooperative interactions between paired domain and homeodomain
    • Jun, S. & Desplan, C. Cooperative interactions between paired domain and homeodomain. Development 122, 2639-2650 (1996).
    • (1996) Development , vol.122 , pp. 2639-2650
    • Jun, S.1    Desplan, C.2
  • 20
    • 0027409947 scopus 로고
    • Sequence specificity of the core-binding factor
    • Melnikova, I.N., Crute, B.E., Wang, S. & Speck, N.A. Sequence specificity of the core-binding factor. J. Virol. 67, 2408-2411 (1993).
    • (1993) J. Virol. , vol.67 , pp. 2408-2411
    • Melnikova, I.N.1    Crute, B.E.2    Wang, S.3    Speck, N.A.4
  • 21
    • 0030042980 scopus 로고    scopus 로고
    • Drosophila homologs of the proto-oncogene product PEBP2/CBF beta regulate the DNA-binding properties of Runt
    • Colling, G., Li, L., Pepling, M., Stebbins, M. & Gergen, J.P. Drosophila homologs of the proto-oncogene product PEBP2/CBF beta regulate the DNA-binding properties of Runt. Mol. Cell. Biol. 16, 932-942 (1996).
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 932-942
    • Colling, G.1    Li, L.2    Pepling, M.3    Stebbins, M.4    Gergen, J.P.5
  • 22
    • 0042121137 scopus 로고    scopus 로고
    • Target Explorer: An automated tool for the identification of new target genes for a specified set of transcription factors
    • Sosinsky, A., Bonin, C.P., Mann, R.S. & Honig, B. Target Explorer: an automated tool for the identification of new target genes for a specified set of transcription factors. Nucleic Acids Res. 31, 3589-3592 (2003).
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3589-3592
    • Sosinsky, A.1    Bonin, C.P.2    Mann, R.S.3    Honig, B.4
  • 23
    • 0025853591 scopus 로고
    • Individual stripe regulatory elements in the Drosophila hairy promoter respond to maternal, gap, and pair-rule genes
    • Riddihough, G. & Ish-Horowicz, D. Individual stripe regulatory elements in the Drosophila hairy promoter respond to maternal, gap, and pair-rule genes. Genes Dev. 5, 840-854 (1991).
    • (1991) Genes Dev. , vol.5 , pp. 840-854
    • Riddihough, G.1    Ish-Horowicz, D.2
  • 24
    • 20644456683 scopus 로고    scopus 로고
    • Dynamic changes in the functions of Odd-skipped during early Drosophila embryogenesis
    • Saulier-Le Drean, B., Nasiadka, A., Dong, J. & Krause, H.M. Dynamic changes in the functions of Odd-skipped during early Drosophila embryogenesis. Development 125, 4851-4861 (1998).
    • (1998) Development , vol.125 , pp. 4851-4861
    • Saulier-Le Drean, B.1    Nasiadka, A.2    Dong, J.3    Krause, H.M.4
  • 26
    • 0030861452 scopus 로고    scopus 로고
    • Independent and tight regulation of transcrlptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements
    • Lutz, R. & Bujard, H. Independent and tight regulation of transcrlptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements. Nucleic Acids Res. 25, 1203-1210 (1997).
    • (1997) Nucleic Acids Res. , vol.25 , pp. 1203-1210
    • Lutz, R.1    Bujard, H.2
  • 27
    • 0035228215 scopus 로고    scopus 로고
    • BioProspector: Discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes
    • Liu, X., Brutlag, D.L. & Liu, J.S. BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes. Pac. Symp. Biocomput. 6, 127-138 (2001).
    • (2001) Pac. Symp. Biocomput. , vol.6 , pp. 127-138
    • Liu, X.1    Brutlag, D.L.2    Liu, J.S.3
  • 28
    • 0025008168 scopus 로고
    • Sequence logos: A new way to display consensus sequences
    • Schneider, T.D. & Stephens, R.M. Sequence logos: a new way to display consensus sequences. Nucleic Acids Res. 18, 6097-5100 (1990).
    • (1990) Nucleic Acids Res. , vol.18 , pp. 6097-15100
    • Schneider, T.D.1    Stephens, R.M.2
  • 30
    • 0024319520 scopus 로고
    • A non-radioactive in situ hybridization method for the localization of specific RNAs in Drosophila embryos reveals translational control of the segmentation gene hunchback
    • Tautz, D. & Pfeifle, C. A non-radioactive in situ hybridization method for the localization of specific RNAs in Drosophila embryos reveals translational control of the segmentation gene hunchback. Chromosoma 98, 81-85 (1989).
    • (1989) Chromosoma , vol.98 , pp. 81-85
    • Tautz, D.1    Pfeifle, C.2


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