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Volumn 5, Issue 3, 2004, Pages 274-279

Convergent evolution of gene networks by single-gene duplications in higher eukaryotes

Author keywords

bHLH protein; Convergent evolution; Gene duplication; Protein interaction networks

Indexed keywords

HELIX LOOP HELIX PROTEIN; REPRESSOR PROTEIN; TRANSCRIPTION FACTOR;

EID: 2442631981     PISSN: 1469221X     EISSN: None     Source Type: Journal    
DOI: 10.1038/sj.embor.7400096     Document Type: Article
Times cited : (72)

References (29)
  • 1
    • 0035816218 scopus 로고    scopus 로고
    • Domain combinations in archaeal, eubacterial and eukaryotic proteomes
    • Apic G, Gough J, Teichmann SA (2001) Domain combinations in archaeal, eubacterial and eukaryotic proteomes. J Mol Biol 310: 311-325
    • (2001) J. Mol. Biol. , vol.310 , pp. 311-325
    • Apic, G.1    Gough, J.2    Teichmann, S.A.3
  • 2
    • 0031008399 scopus 로고    scopus 로고
    • A natural classification of the basic helix-loop-helix class of transcription factors
    • Atchley WR, Fitch WM (1997) A natural classification of the basic helix-loop-helix class of transcription factors. Proc Natl Acad Sci USA 94: 5172-5176
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 5172-5176
    • Atchley, W.R.1    Fitch, W.M.2
  • 4
    • 0025821904 scopus 로고
    • The leucine zipper of TFE3 dictates helix-loop-helix dimerization specificity
    • Beckmann H, Kadesch T (1991) The leucine zipper of TFE3 dictates helix-loop-helix dimerization specificity. Genes Dev 5: 1057-1066
    • (1991) Genes Dev. , vol.5 , pp. 1057-1066
    • Beckmann, H.1    Kadesch, T.2
  • 5
  • 6
    • 0031569798 scopus 로고    scopus 로고
    • The crystal structure of an intact human Max-DNA complex: New insights into mechanisms of transcriptional control
    • Brownlie P, Ceska T, Lamers M, Romier C, Stier G, Teo H, Suck D (1997) The crystal structure of an intact human Max-DNA complex: new insights into mechanisms of transcriptional control. Structure 5: 509-520
    • (1997) Structure , vol.5 , pp. 509-520
    • Brownlie, P.1    Ceska, T.2    Lamers, M.3    Romier, C.4    Stier, G.5    Teo, H.6    Suck, D.7
  • 7
    • 0037743679 scopus 로고    scopus 로고
    • Convergent evolution of gene circuits
    • Conant C, Wagner A (2003) Convergent evolution of gene circuits. Nat Genet 34: 264-266
    • (2003) Nat. Genet. , vol.34 , pp. 264-266
    • Conant, C.1    Wagner, A.2
  • 8
    • 0034721779 scopus 로고    scopus 로고
    • The basic helix-loop-helix transcription factors dHAND and eHAND exhibit dimerization characteristics that suggest complex regulation of function
    • Firulli BA, Hadzic DB, McDaid JR, Firulli AB (2000) The basic helix-loop-helix transcription factors dHAND and eHAND exhibit dimerization characteristics that suggest complex regulation of function. J Biol Chem 275: 33567-33573
    • (2000) J. Biol. Chem. , vol.275 , pp. 33567-33573
    • Firulli, B.A.1    Hadzic, D.B.2    McDaid, J.R.3    Firulli, A.B.4
  • 11
    • 0030887045 scopus 로고    scopus 로고
    • Characterization of a subset of the basic-helix-loop-helix-PAS superfamily that interacts with components of the dioxin signaling pathway
    • Hogenesch JB, Chan WK, Jackiw VH, Brown RC, Gu YZ, Pray-Grant M, Perdew GH, Bradfield CA (1997) Characterization of a subset of the basic-helix-loop-helix-PAS superfamily that interacts with components of the dioxin signaling pathway. J Biol Chem 272: 8581-8593
    • (1997) J. Biol. Chem. , vol.272 , pp. 8581-8593
    • Hogenesch, J.B.1    Chan, W.K.2    Jackiw, V.H.3    Brown, R.C.4    Gu, Y.Z.5    Pray-Grant, M.6    Perdew, G.H.7    Bradfield, C.A.8
  • 12
    • 0025052367 scopus 로고
    • Transcription factor AP-4 contains multiple dimerization domains that regulate dimer specificity
    • Hu YF, Luscher B, Admon A, Mermod N, Tjian R (1990) Transcription factor AP-4 contains multiple dimerization domains that regulate dimer specificity. Genes Dev 4: 1741-1752
    • (1990) Genes Dev. , vol.4 , pp. 1741-1752
    • Hu, Y.F.1    Luscher, B.2    Admon, A.3    Mermod, N.4    Tjian, R.5
  • 13
    • 0035001937 scopus 로고    scopus 로고
    • The basic helix-loop-helix protein family: Comparative genomics and phylogenetic analysis
    • Ledent V, Vervoort M (2001) The basic helix-loop-helix protein family: comparative genomics and phylogenetic analysis. Genome Res 11: 754-770
    • (2001) Genome Res. , vol.11 , pp. 754-770
    • Ledent, V.1    Vervoort, M.2
  • 14
    • 18744421788 scopus 로고    scopus 로고
    • Phylogenetic analysis of the human basic helix-loop-helix proteins
    • RESEARCH0030
    • Ledent V, Paquet O, Vervoort M (2002) Phylogenetic analysis of the human basic helix-loop-helix proteins. Genome Biol 3: RESEARCH0030
    • (2002) Genome Biol. , vol.3
    • Ledent, V.1    Paquet, O.2    Vervoort, M.3
  • 15
    • 0037819447 scopus 로고    scopus 로고
    • Transcription regulation and animal diversity
    • Levine M, Tjian R (2003) Transcription regulation and animal diversity. Nature 424: 147-151
    • (2003) Nature , vol.424 , pp. 147-151
    • Levine, M.1    Tjian, R.2
  • 16
    • 0029189481 scopus 로고
    • Transcription factors 2: Helix-loop-helix
    • Littlewood TD, Evan GI (1995) Transcription factors 2: helix-loop-helix. Protein Profile 2: 621-702
    • (1995) Protein Profile , vol.2 , pp. 621-702
    • Littlewood, T.D.1    Evan, G.I.2
  • 17
    • 0035904463 scopus 로고    scopus 로고
    • Function and regulation of the transcription factors of the Myc/Max/Mad network
    • Luscher B (2001) Function and regulation of the transcription factors of the Myc/Max/Mad network. Gene 277: 1-14
    • (2001) Gene , vol.277 , pp. 1-14
    • Luscher, B.1
  • 18
    • 0033980393 scopus 로고    scopus 로고
    • Helix-loop-helix proteins: Regulators of transcription in eucaryotic organisms
    • Massari ME, Murre C (2000) Helix-loop-helix proteins: regulators of transcription in eucaryotic organisms. Mol Cell Biol 20: 429-440
    • (2000) Mol. Cell Biol. , vol.20 , pp. 429-440
    • Massari, M.E.1    Murre, C.2
  • 19
    • 0037208166 scopus 로고    scopus 로고
    • TRANSFAC: Transcriptional regulation, from patterns to profiles
    • Matys V et al (2003) TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res 31: 374-378
    • (2003) Nucleic Acids Res. , vol.31 , pp. 374-378
    • Matys, V.1
  • 20
    • 0032555224 scopus 로고    scopus 로고
    • Dynamics of the genetic regulatory network for Arabidopsis thaliana flower morphogenesis
    • Mendoza L, Alvarez-Buylla ER (1998) Dynamics of the genetic regulatory network for Arabidopsis thaliana flower morphogenesis. J Theor Biol 193: 307-319
    • (1998) J. Theor. Biol. , vol.193 , pp. 307-319
    • Mendoza, L.1    Alvarez-Buylla, E.R.2
  • 21
    • 0035193659 scopus 로고    scopus 로고
    • Divergence pattern of animal gene families and relationship with the Cambrian explosion
    • Miyata T, Suga H (2001) Divergence pattern of animal gene families and relationship with the Cambrian explosion. BioEssays 23: 1018-1027
    • (2001) BioEssays , vol.23 , pp. 1018-1027
    • Miyata, T.1    Suga, H.2
  • 22
    • 0034641745 scopus 로고    scopus 로고
    • A genomewide survey of basic helix-loop-helix factors in Drosophila
    • Moore AW, Barbel S, Jan LY, Jan YN (2000) A genomewide survey of basic helix-loop-helix factors in Drosophila. Proc Natl Acad Sci USA 97: 10436-10441
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 10436-10441
    • Moore, A.W.1    Barbel, S.2    Jan, L.Y.3    Jan, Y.N.4
  • 23
    • 0037462459 scopus 로고    scopus 로고
    • X-ray structures of Myc-Max and Mad-Max recognizing DNA. Molecular bases of regulation by proto-oncogenic transcription factors
    • Nair SK, Burley SK (2003) X-ray structures of Myc-Max and Mad-Max recognizing DNA. Molecular bases of regulation by proto-oncogenic transcription factors. Cell 112: 193-205
    • (2003) Cell , vol.112 , pp. 193-205
    • Nair, S.K.1    Burley, S.K.2
  • 25
    • 0038157152 scopus 로고    scopus 로고
    • Dosage sensitivity and the evolution of gene families in yeast
    • Papp B, Pal C, Hurst L (2003) Dosage sensitivity and the evolution of gene families in yeast. Nature 424: 194-197
    • (2003) Nature , vol.424 , pp. 194-197
    • Papp, B.1    Pal, C.2    Hurst, L.3
  • 26
    • 0031834838 scopus 로고    scopus 로고
    • Role of the PAS domain in regulation of dimerization and DNA binding specificity of the dioxin receptor
    • Pongratz I, Antonsson C, Whitelaw ML, Poellinger L (1998) Role of the PAS domain in regulation of dimerization and DNA binding specificity of the dioxin receptor. Mol Cell Biol 18: 4079-4088
    • (1998) Mol. Cell Biol. , vol.18 , pp. 4079-4088
    • Pongratz, I.1    Antonsson, C.2    Whitelaw, M.L.3    Poellinger, L.4
  • 27
    • 0028206995 scopus 로고
    • Evolution of gene networks by gene duplications: A mathematical model and its implications on genome organization
    • Wagner A (1994) Evolution of gene networks by gene duplications: a mathematical model and its implications on genome organization. Proc Natl Acad Sci USA 91: 4387-4391
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 4387-4391
    • Wagner, A.1
  • 28
    • 0035339923 scopus 로고    scopus 로고
    • Birth and death of duplicated genes in completely sequenced eukaryotes
    • Wagner A (2001) Birth and death of duplicated genes in completely sequenced eukaryotes. Trends Genet 17: 237-239
    • (2001) Trends Genet. , vol.17 , pp. 237-239
    • Wagner, A.1
  • 29
    • 0037423828 scopus 로고    scopus 로고
    • How the global structure of protein interaction networks evolves
    • Wagner A (2003) How the global structure of protein interaction networks evolves. Proc R Soc Lond B 270: 457-466
    • (2003) Proc. R. Soc. Lond. B. , vol.270 , pp. 457-466
    • Wagner, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.