메뉴 건너뛰기




Volumn 2, Issue 5, 2004, Pages

A neutral model of transcriptome evolution

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; ANIMAL TISSUE; ARTICLE; BRAIN REGION; GENE EXPRESSION; GENE IDENTIFICATION; GENETIC VARIABILITY; HUMAN; HUMAN TISSUE; HYPOTHESIS; MALE; MOLECULAR EVOLUTION; MOUSE; NONHUMAN; PSEUDOGENE; SPECIES; STOCHASTIC MODEL; TRANSCRIPTION INITIATION; ANIMAL; BIOLOGICAL MODEL; BRAIN; DNA MICROARRAY; EVOLUTION; GENE EXPRESSION REGULATION; LIVER; METABOLISM; PAN TROGLODYTES; PHENOTYPE; SPECIES DIFFERENCE; STATISTICS; TIME; TISSUE DISTRIBUTION;

EID: 19344372220     PISSN: 15449173     EISSN: None     Source Type: Journal    
DOI: 10.1371/journal.pbio.0020132     Document Type: Article
Times cited : (276)

References (37)
  • 2
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Find this article online
    • Bolstad BM, Irizarry RA, Astrand M, Speed TP (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19: 185-193. Find this article online
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 4
    • 0242268390 scopus 로고    scopus 로고
    • Elevated gene expression levels distinguish human from non-human primate brains
    • Find this article online
    • Caceres M, Lachuer J, Zapala MA, Redmond JC, Kudo L, et al. (2003) Elevated gene expression levels distinguish human from non-human primate brains. Proc Natl Acad Sci U S A 100: 13030-13035. Find this article online
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 13030-13035
    • Caceres, M.1    Lachuer, J.2    Zapala, M.A.3    Redmond, J.C.4    Kudo, L.5
  • 5
    • 0021536852 scopus 로고
    • Some quantitative methods for studying evolutionary patterns in single characters
    • Find this article online
    • Charlesworth B (1984) Some quantitative methods for studying evolutionary patterns in single characters. Paleobiology 10: 308-318. Find this article online
    • (1984) Paleobiology , vol.10 , pp. 308-318
    • Charlesworth, B.1
  • 6
    • 0035130163 scopus 로고    scopus 로고
    • Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees
    • Find this article online
    • Chen FC, Li WH (2001) Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees. Am J Hum Genet 68: 444-456. Find this article online
    • (2001) Am J Hum Genet , vol.68 , pp. 444-456
    • Chen, F.C.1    Li, W.H.2
  • 7
    • 1842790484 scopus 로고    scopus 로고
    • Microarray analysis supports a role for CCAAT/enhancer binding protein beta in brain injury
    • in press
    • Cortes-Canteli M, Wagner M, Ansorge W, Perez-Castillo A (2004) Microarray analysis supports a role for CCAAT/enhancer binding protein beta in brain injury. J Biol Chem (in press).
    • (2004) J Biol Chem
    • Cortes-Canteli, M.1    Wagner, M.2    Ansorge, W.3    Perez-Castillo, A.4
  • 8
    • 0037066542 scopus 로고    scopus 로고
    • Intra- and interspecific variation in primate gene expression patterns
    • Find this article online
    • Enard W, Khaitovich P, Klose J, Zollner S, Heissig F, et al. (2002) Intra- and interspecific variation in primate gene expression patterns. Science 296: 340-343. Find this article online
    • (2002) Science , vol.296 , pp. 340-343
    • Enard, W.1    Khaitovich, P.2    Klose, J.3    Zollner, S.4    Heissig, F.5
  • 9
    • 0003991673 scopus 로고    scopus 로고
    • Sunderland (Massachusetts): Sinauer Associates. 664 p
    • Felsenstein J (2004) Inferring phylogenies. Sunderland (Massachusetts): Sinauer Associates. 664 p.
    • (2004) Inferring Phylogenies
    • Felsenstein, J.1
  • 10
    • 0037357461 scopus 로고    scopus 로고
    • Estimation of divergence times for major lineages of primate species
    • Find this article online
    • Glazko GV, Nei M (2003) Estimation of divergence times for major lineages of primate species. Mol Biol Evol 20: 424-434. Find this article online
    • (2003) Mol Biol Evol , vol.20 , pp. 424-434
    • Glazko, G.V.1    Nei, M.2
  • 11
    • 0004160847 scopus 로고
    • Cambridge (Massachusetts): Belknap Press. 501 p
    • Gould SJ (1977) Ontogeny and phylogeny. Cambridge (Massachusetts): Belknap Press. 501 p.
    • (1977) Ontogeny and Phylogeny
    • Gould, S.J.1
  • 12
    • 0018692402 scopus 로고
    • The spandrels of San Marco and the Panglossian paradigm: A critique of the adaptationist programme
    • Find this article online
    • Gould SJ, Lewontin RC (1979) The spandrels of San Marco and the Panglossian paradigm: A critique of the adaptationist programme. Proc R Soc Lond B Biol Sci 205: 581-598. Find this article online
    • (1979) Proc R Soc Lond B Biol Sci , vol.205 , pp. 581-598
    • Gould, S.J.1    Lewontin, R.C.2
  • 13
    • 0037303824 scopus 로고    scopus 로고
    • Induced gene expression in human brain after the split from chimpanzee
    • Find this article online
    • Gu J, Gu X (2003) Induced gene expression in human brain after the split from chimpanzee. Trends Genet 19: 63-65. Find this article online
    • (2003) Trends Genet , vol.19 , pp. 63-65
    • Gu, J.1    Gu, X.2
  • 14
    • 0029816997 scopus 로고    scopus 로고
    • Molecular phylogeny of macaques: Implications of nucleotide sequences from an 896-base pair region of mitochondrial DNA
    • Find this article online
    • Hayasaka K, Fujii K, Horai S (1996) Molecular phylogeny of macaques: Implications of nucleotide sequences from an 896-base pair region of mitochondrial DNA. Mol Biol Evol 13: 1044-1053. Find this article online
    • (1996) Mol Biol Evol , vol.13 , pp. 1044-1053
    • Hayasaka, K.1    Fujii, K.2    Horai, S.3
  • 15
    • 0038015586 scopus 로고    scopus 로고
    • A neutral explanation for the correlation of diversity with recombination rates in humans
    • Find this article online
    • Hellmann I, Ebersberger I, Ptak SE, Paabo S, Przeworski M (2003) A neutral explanation for the correlation of diversity with recombination rates in humans. Am J Hum Genet 72: 1527-1535. Find this article online
    • (2003) Am J Hum Genet , vol.72 , pp. 1527-1535
    • Hellmann, I.1    Ebersberger, I.2    Ptak, S.E.3    Paabo, S.4    Przeworski, M.5
  • 16
    • 0242318322 scopus 로고    scopus 로고
    • Mixed-model reanalysis of primate data suggests tissue and species biases in oligonucleotide-based gene expression profiles
    • Find this article online
    • Hsieh WP, Chu TM, Wolfinger RD, Gibson G (2003) Mixed-model reanalysis of primate data suggests tissue and species biases in oligonucleotide-based gene expression profiles. Genetics 165: 747-757. Find this article online
    • (2003) Genetics , vol.165 , pp. 747-757
    • Hsieh, W.P.1    Chu, T.M.2    Wolfinger, R.D.3    Gibson, G.4
  • 17
    • 0034616930 scopus 로고    scopus 로고
    • Functional discovery via a compendium of expression profiles
    • Find this article online
    • Hughes TR, Marton MJ, Jones AR, Roberts CJ, Stoughton R, et al. (2000) Functional discovery via a compendium of expression profiles. Cell 102: 109-126. Find this article online
    • (2000) Cell , vol.102 , pp. 109-126
    • Hughes, T.R.1    Marton, M.J.2    Jones, A.R.3    Roberts, C.J.4    Stoughton, R.5
  • 18
    • 0030305457 scopus 로고    scopus 로고
    • R: A language for data analysis and graphics
    • Find this article online
    • Ihaka R, Gentleman R (1996) R: A language for data analysis and graphics. J Comput Graph Stat 5: 299-314. Find this article online
    • (1996) J Comput Graph Stat , vol.5 , pp. 299-314
    • Ihaka, R.1    Gentleman, R.2
  • 20
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - The BLAST-like alignment tool
    • Find this article online
    • Kent WJ (2002) BLAT - the BLAST-like alignment tool. Genome Res 12: 656-664. Find this article online
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 22
    • 0017144189 scopus 로고
    • Natural selection and random genetic drift in phenotypic evolution
    • Find this article online
    • Lande R (1976) Natural selection and random genetic drift in phenotypic evolution. Evolution 30: 314-334. Find this article online
    • (1976) Evolution , vol.30 , pp. 314-334
    • Lande, R.1
  • 23
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Find this article online
    • Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, et al. (2001) Initial sequencing and analysis of the human genome. Nature 409: 860-921. Find this article online
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1    Linton, L.M.2    Birren, B.3    Nusbaum, C.4    Zody, M.C.5
  • 24
    • 0003421005 scopus 로고    scopus 로고
    • Sunderland (Massachusetts): Sinauer Associates. 487 p
    • Li WH (1997) Molecular evolution. Sunderland (Massachusetts): Sinauer Associates. 487 p.
    • (1997) Molecular Evolution
    • Li, W.H.1
  • 25
    • 0001199482 scopus 로고
    • Phenotypic evolution by neutral mutation
    • Find this article online
    • Lynch M, Hill WG (1986) Phenotypic evolution by neutral mutation. Evolution 40: 915-935. Find this article online
    • (1986) Evolution , vol.40 , pp. 915-935
    • Lynch, M.1    Hill, W.G.2
  • 26
    • 0035956926 scopus 로고    scopus 로고
    • Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mouse cDNA arrays
    • Find this article online
    • Miki R, Kadota K, Bono H, Mizuno Y, Tomaru Y, et al. (2001) Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mouse cDNA arrays. Proc Natl Acad Sci U S A 98: 2199-2204. Find this article online
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 2199-2204
    • Miki, R.1    Kadota, K.2    Bono, H.3    Mizuno, Y.4    Tomaru, Y.5
  • 28
    • 0036789519 scopus 로고    scopus 로고
    • Variation in gene expression within and among natural populations
    • Find this article online
    • Oleksiak MF, Churchill GA, Crawford DL (2002) Variation in gene expression within and among natural populations. Nat Genet 32: 261-266. Find this article online
    • (2002) Nat Genet , vol.32 , pp. 261-266
    • Oleksiak, M.F.1    Churchill, G.A.2    Crawford, D.L.3
  • 29
    • 0037504137 scopus 로고    scopus 로고
    • Sex-dependent gene expression and evolution of the Drosophila transcriptome
    • Find this article online
    • Ranz JM, Castillo-Davis CI, Meiklejohn CD, Hartl DL (2003) Sex-dependent gene expression and evolution of the Drosophila transcriptome. Science 300: 1742-1745. Find this article online
    • (2003) Science , vol.300 , pp. 1742-1745
    • Ranz, J.M.1    Castillo-Davis, C.I.2    Meiklejohn, C.D.3    Hartl, D.L.4
  • 30
    • 0037313182 scopus 로고    scopus 로고
    • Evolution of gene expression in the Drosophila melanogaster subgroup
    • Find this article online
    • Rifkin SA, Kim J, White KP (2003) Evolution of gene expression in the Drosophila melanogaster subgroup. Nat Genet 33: 138-144. Find this article online
    • (2003) Nat Genet , vol.33 , pp. 138-144
    • Rifkin, S.A.1    Kim, J.2    White, K.P.3
  • 31
    • 0037311919 scopus 로고    scopus 로고
    • TM4: A free, open-source system for microarray data management and analysis
    • Find this article online
    • Saeed AI, Sharov V, White J, Li J, Liang W, et al. (2003) TM4: A free, open-source system for microarray data management and analysis. Biotechniques 34: 374-378. Find this article online
    • (2003) Biotechniques , vol.34 , pp. 374-378
    • Saeed, A.I.1    Sharov, V.2    White, J.3    Li, J.4    Liang, W.5
  • 32
    • 0003061123 scopus 로고
    • Molecular phylogenies in the genus Mus Comparative analysis of electrophoretic, scnDNA hybridization, and mtDNA RFLP data
    • Find this article online
    • She JX, Bonhomme F, Boursot P, Thaler L, Catzeflis F (1990) Molecular phylogenies in the genus Mus Comparative analysis of electrophoretic, scnDNA hybridization, and mtDNA RFLP data. Biol J Linn Soc 41: 83-103. Find this article online
    • (1990) Biol J Linn Soc , vol.41 , pp. 83-103
    • She, J.X.1    Bonhomme, F.2    Boursot, P.3    Thaler, L.4    Catzeflis, F.5
  • 33
    • 0031742022 scopus 로고    scopus 로고
    • Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
    • Find this article online
    • Spellman PT, Sherlock G, Zhang MQ, Iyer VR, Anders K, et al. (1998) Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol Biol Cell 9: 3273-3297. Find this article online
    • (1998) Mol Biol Cell , vol.9 , pp. 3273-3297
    • Spellman, P.T.1    Sherlock, G.2    Zhang, M.Q.3    Iyer, V.R.4    Anders, K.5
  • 34
    • 0037007048 scopus 로고    scopus 로고
    • Large-scale analysis of the human and mouse transcriptomes
    • Find this article online
    • Su AI, Cooke MP, Ching KA, Hakak Y, Walker JR, et al. (2002) Large-scale analysis of the human and mouse transcriptomes. Proc Natl Acad Sci U S A 99: 4465-4470. Find this article online
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 4465-4470
    • Su, A.I.1    Cooke, M.P.2    Ching, K.A.3    Hakak, Y.4    Walker, J.R.5
  • 35
    • 0348013073 scopus 로고    scopus 로고
    • A genome-wide survey of human pseudogenes
    • Find this article online
    • Torrents D, Suyama M, Zdobnov E, Bork P (2003) A genome-wide survey of human pseudogenes. Genome Res 13: 2559-2567. Find this article online
    • (2003) Genome Res , vol.13 , pp. 2559-2567
    • Torrents, D.1    Suyama, M.2    Zdobnov, E.3    Bork, P.4
  • 36
    • 0001065304 scopus 로고
    • Rate tests for selection on quantitative characters during macroevolution and microevolution
    • Find this article online
    • Turelli M, Gillespie JH, Lande R (1988) Rate tests for selection on quantitative characters during macroevolution and microevolution. Evolution 42: 1085-1089. Find this article online
    • (1988) Evolution , vol.42 , pp. 1085-1089
    • Turelli, M.1    Gillespie, J.H.2    Lande, R.3
  • 37
    • 0346752110 scopus 로고    scopus 로고
    • Millions of years of evolution preserved: A comprehensive catalog of the processed pseudogenes in the human genome
    • Find this article online
    • Zhang Z, Harrison PM, Liu Y, Gerstein M (2003) Millions of years of evolution preserved: A comprehensive catalog of the processed pseudogenes in the human genome. Genome Res 13: 2541-2558. Find this article online
    • (2003) Genome Res , vol.13 , pp. 2541-2558
    • Zhang, Z.1    Harrison, P.M.2    Liu, Y.3    Gerstein, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.