-
1
-
-
34250181732
-
The MADS domain factors AGL15 and AGL18 act redundantly as repressors of the floral transition in Arabidopsis
-
Adamczyk BJ, Lehti-Shiu MD, Fernandez DE (2007) The MADS domain factors AGL15 and AGL18 act redundantly as repressors of the floral transition in Arabidopsis. Plant J 50: 1007-1019
-
(2007)
Plant J
, vol.50
, pp. 1007-1019
-
-
Adamczyk, B.J.1
Lehti-Shiu, M.D.2
Fernandez, D.E.3
-
3
-
-
0029197507
-
The value of prior knowledge in discovering motifs with MEME
-
Bailey TL, Elkan C (1995) The value of prior knowledge in discovering motifs with MEME. Proc Int Conf Intell Syst Mol Biol 3: 21-29
-
(1995)
Proc Int Conf Intell Syst Mol Biol
, vol.3
, pp. 21-29
-
-
Bailey, T.L.1
Elkan, C.2
-
4
-
-
33947532255
-
Role of heat stress transcription factor HsfA5 as specific repressor of HsfA4
-
Baniwal SK, Chan KY, Scharf KD, Nover L (2007) Role of heat stress transcription factor HsfA5 as specific repressor of HsfA4. J Biol Chem 282: 3605-3613
-
(2007)
J Biol Chem
, vol.282
, pp. 3605-3613
-
-
Baniwal, S.K.1
Chan, K.Y.2
Scharf, K.D.3
Nover, L.4
-
5
-
-
2942672959
-
Repression of AGAMOUS by BELLRINGER in floral and inflorescence meristems
-
Bao X, Franks RG, Levin JZ, Liu Z (2004) Repression of AGAMOUS by BELLRINGER in floral and inflorescence meristems. Plant Cell 16: 1478-1489
-
(2004)
Plant Cell
, vol.16
, pp. 1478-1489
-
-
Bao, X.1
Franks, R.G.2
Levin, J.Z.3
Liu, Z.4
-
6
-
-
0026201709
-
Expression of the Arabidopsis floral homeotic gene AGAMOUS is restricted to specific cell types late in flower development
-
Bowman JL, Drews GN, Meyerowitz EM (1991) Expression of the Arabidopsis floral homeotic gene AGAMOUS is restricted to specific cell types late in flower development. Plant Cell 3: 749-758
-
(1991)
Plant Cell
, vol.3
, pp. 749-758
-
-
Bowman, J.L.1
Drews, G.N.2
Meyerowitz, E.M.3
-
7
-
-
0036337173
-
ASYMMETRIC LEAVES1 reveals knox gene redundancy in Arabidopsis
-
Byrne ME, Simorowski J, Martienssen RA (2002) ASYMMETRIC LEAVES1 reveals knox gene redundancy in Arabidopsis. Development 129: 1957-1965
-
(2002)
Development
, vol.129
, pp. 1957-1965
-
-
Byrne, M.E.1
Simorowski, J.2
Martienssen, R.A.3
-
8
-
-
70349664314
-
ETHYLENE INSENSITIVE3 and ETHYLENE INSENSITIVE3-LIKE1 repress SALICYLIC ACID INDUCTION DEFI-CIENT2 expression to negatively regulate plant innate immunity in Arabidopsis
-
Chen H, Xue L, Chintamanani S, Germain H, Lin H, Cui H, Cai R, Zuo J, Tang X, Li X, et al (2009) ETHYLENE INSENSITIVE3 and ETHYLENE INSENSITIVE3-LIKE1 repress SALICYLIC ACID INDUCTION DEFI-CIENT2 expression to negatively regulate plant innate immunity in Arabidopsis. Plant Cell 21: 2527-2540
-
(2009)
Plant Cell
, vol.21
, pp. 2527-2540
-
-
Chen, H.1
Xue, L.2
Chintamanani, S.3
Germain, H.4
Lin, H.5
Cui, H.6
Cai, R.7
Zuo, J.8
Tang, X.9
Li, X.10
-
10
-
-
34547743829
-
The JAZ family of repressors is the missing link in jasmonate signalling
-
Chini A, Fonseca S, Fernandez G, Adie B, Chico JM, Lorenzo O, Garcia-Casado G, Lopez-Vidriero I, Lozano FM, Ponce MR, et al (2007) The JAZ family of repressors is the missing link in jasmonate signalling. Nature 448: 666-671
-
(2007)
Nature
, vol.448
, pp. 666-671
-
-
Chini, A.1
Fonseca, S.2
Fernandez, G.3
Adie, B.4
Chico, J.M.5
Lorenzo, O.6
Garcia-Casado, G.7
Lopez-Vidriero, I.8
Lozano, F.M.9
Ponce, M.R.10
-
12
-
-
34247890213
-
The EAR-motif of the Cys2/His2-type zinc finger protein Zat7 plays a key role in the defense response of Arabidopsis to salinity stress
-
Ciftci-Yilmaz S, Morsy MR, Song L, Coutu A, Krizek BA, Lewis MW, Warren D, Cushman J, Connolly EL, Mittler R (2007) The EAR-motif of the Cys2/His2-type zinc finger protein Zat7 plays a key role in the defense response of Arabidopsis to salinity stress. J Biol Chem 282: 9260-9268
-
(2007)
J Biol Chem
, vol.282
, pp. 9260-9268
-
-
Ciftci-Yilmaz, S.1
Morsy, M.R.2
Song, L.3
Coutu, A.4
Krizek, B.A.5
Lewis, M.W.6
Warren, D.7
Cushman, J.8
Connolly, E.L.9
Mittler, R.10
-
13
-
-
70350732744
-
Improved visualization of protein consensus sequences by IceLogo
-
Colaert N, Helsens K, Martens L, Vandekerckhove J, Gevaert K (2009) Improved visualization of protein consensus sequences by IceLogo. Nat Methods 6: 786-787
-
(2009)
Nat Methods
, vol.6
, pp. 786-787
-
-
Colaert, N.1
Helsens, K.2
Martens, L.3
Vandekerckhove, J.4
Gevaert, K.5
-
15
-
-
33344455077
-
The zinc-finger protein Zat12 plays a central role in reactive oxygen and abiotic stress signaling in Arabidopsis
-
Davletova S, Schlauch K, Coutu J, Mittler R (2005) The zinc-finger protein Zat12 plays a central role in reactive oxygen and abiotic stress signaling in Arabidopsis. Plant Physiol 139: 847-856
-
(2005)
Plant Physiol
, vol.139
, pp. 847-856
-
-
Davletova, S.1
Schlauch, K.2
Coutu, J.3
Mittler, R.4
-
16
-
-
0347492019
-
AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors
-
Davuluri RV, Sun H, Palaniswamy SK, Matthews N, Molina C, Kurtz M, Grotewold E (2003) AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors. BMC Bioinformatics 4: 25
-
(2003)
Bmc Bioinformatics
, vol.4
, pp. 25
-
-
Davuluri, R.V.1
Sun, H.2
Palaniswamy, S.K.3
Matthews, N.4
Molina, C.5
Kurtz, M.6
Grotewold, E.7
-
17
-
-
3042699706
-
Dimerization specificity of all 67 B-ZIP motifs in Arabidopsis thaliana: A comparison to Homo sapiens B-ZIP motifs
-
Deppmann CD, Acharya A, Rishi V, Wobbes B, Smeekens S, Taparowsky EJ, Vinson C (2004) Dimerization specificity of all 67 B-ZIP motifs in Arabidopsis thaliana: a comparison to Homo sapiens B-ZIP motifs. Nucleic Acids Res 32: 3435-3445
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 3435-3445
-
-
Deppmann, C.D.1
Acharya, A.2
Rishi, V.3
Wobbes, B.4
Smeekens, S.5
Taparowsky, E.J.6
Vinson, C.7
-
18
-
-
0141746099
-
The Arabidopsis NPR1 disease resistance protein is a novel cofactor that confers redox regulation of DNA binding activity to the basic domain/leucine zipper transcription factor TGA1
-
Despres C, Chubak C, Rochon A, Clark R, Bethune T, Desveaux D, Fobert PR (2003) The Arabidopsis NPR1 disease resistance protein is a novel cofactor that confers redox regulation of DNA binding activity to the basic domain/leucine zipper transcription factor TGA1. Plant Cell 15: 2181-2191
-
(2003)
Plant Cell
, vol.15
, pp. 2181-2191
-
-
Despres, C.1
Chubak, C.2
Rochon, A.3
Clark, R.4
Bethune, T.5
Desveaux, D.6
Fobert, P.R.7
-
19
-
-
34548666180
-
Phosphate homeostasis and root development in Arabidopsis are synchronized by the zinc finger transcription factor ZAT6
-
Devaiah BN, Nagarajan VK, Raghothama KG (2007) Phosphate homeostasis and root development in Arabidopsis are synchronized by the zinc finger transcription factor ZAT6. Plant Physiol 145: 147-159
-
(2007)
Plant Physiol
, vol.145
, pp. 147-159
-
-
Devaiah, B.N.1
Nagarajan, V.K.2
Raghothama, K.G.3
-
20
-
-
33744520726
-
NUBBIN and JAGGED define stamen and carpel shape in Arabidopsis
-
Dinneny JR, Weigel D, Yanofsky MF (2006) NUBBIN and JAGGED define stamen and carpel shape in Arabidopsis. Development 133: 1645-1655
-
(2006)
Development
, vol.133
, pp. 1645-1655
-
-
Dinneny, J.R.1
Weigel, D.2
Yanofsky, M.F.3
-
21
-
-
0025891885
-
Negative regulation of the Arabidopsis homeotic gene AGAMOUS by the APETALA2 product
-
Drews GN, Bowman JL, Meyerowitz EM (1991) Negative regulation of the Arabidopsis homeotic gene AGAMOUS by the APETALA2 product. Cell 65: 991-1002
-
(1991)
Cell
, vol.65
, pp. 991-1002
-
-
Drews, G.N.1
Bowman, J.L.2
Meyerowitz, E.M.3
-
22
-
-
0031743421
-
Profile Hidden Markov Models
-
Eddy SR (1998) Profile hidden Markov models. Bioinformatics 14: 755-763
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
23
-
-
0036676523
-
B-ZIP proteins encoded by the Drosophila genome: Evaluation of potential dimerization partners
-
Fassler J, Landsman D, Acharya A, Moll JR, Bonovich M, Vinson C (2002) B-ZIP proteins encoded by the Drosophila genome: evaluation of potential dimerization partners. Genome Res 12: 1190-1200
-
(2002)
Genome Res
, vol.12
, pp. 1190-1200
-
-
Fassler, J.1
Landsman, D.2
Acharya, A.3
Moll, J.R.4
Bonovich, M.5
Vinson, C.6
-
24
-
-
0034031131
-
Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression
-
Fujimoto SY, Ohta M, Usui A, Shinshi H, Ohme-Takagi M (2000) Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Plant Cell 12: 393-404
-
(2000)
Plant Cell
, vol.12
, pp. 393-404
-
-
Fujimoto, S.Y.1
Ohta, M.2
Usui, A.3
Shinshi, H.4
Ohme-Takagi, M.5
-
25
-
-
0042196547
-
An Arabidopsis MADS-box protein, AGL24, is specifically bound to and phosphorylated by meristematic receptor-like kinase (MRLK)
-
Fujita H, Takemura M, Tani E, Nemoto K, Yokota A, Kohchi T (2003) An Arabidopsis MADS-box protein, AGL24, is specifically bound to and phosphorylated by meristematic receptor-like kinase (MRLK). Plant Cell Physiol 44: 735-742
-
(2003)
Plant Cell Physiol
, vol.44
, pp. 735-742
-
-
Fujita, H.1
Takemura, M.2
Tani, E.3
Nemoto, K.4
Yokota, A.5
Kohchi, T.6
-
26
-
-
33745460951
-
GLABROUS INFLORESCENCE STEMS modulates the regulation by gibberellins of epidermal differentiation and shoot maturation in Arabidopsis
-
Gan Y, Kumimoto R, Liu C, Ratcliffe O, Yu H, Broun P (2006) GLABROUS INFLORESCENCE STEMS modulates the regulation by gibberellins of epidermal differentiation and shoot maturation in Arabidopsis. Plant Cell 18: 1383-1395
-
(2006)
Plant Cell
, vol.18
, pp. 1383-1395
-
-
Gan, Y.1
Kumimoto, R.2
Liu, C.3
Ratcliffe, O.4
Yu, H.5
Broun, P.6
-
27
-
-
34250794466
-
Integration of cytokinin and gibberellin signalling by Arabidopsis transcription factors GIS, ZFP8 and GIS2 in the regulation of epidermal cell fate
-
Gan Y, Liu C, Yu H, Broun P (2007) Integration of cytokinin and gibberellin signalling by Arabidopsis transcription factors GIS, ZFP8 and GIS2 in the regulation of epidermal cell fate. Development 134: 2073-2081
-
(2007)
Development
, vol.134
, pp. 2073-2081
-
-
Gan, Y.1
Liu, C.2
Yu, H.3
Broun, P.4
-
28
-
-
47749083127
-
The AtGenExpress hormone and chemical treatment data set: Experimental design, data evaluation, model data analysis and data access
-
Goda H, Sasaki E, Akiyama K, Maruyama-Nakashita A, Nakabayashi K, Li W, Ogawa M, Yamauchi Y, Preston J, Aoki K, et al (2008) The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access. Plant J 55: 526-542
-
(2008)
Plant J
, vol.55
, pp. 526-542
-
-
Goda, H.1
Sasaki, E.2
Akiyama, K.3
Maruyama-Nakashita, A.4
Nakabayashi, K.5
Li, W.6
Ogawa, M.7
Yamauchi, Y.8
Preston, J.9
Aoki, K.10
-
29
-
-
34547202027
-
The transcription corepressor LEUNIG interacts with the histone deacetylase HDA19 and mediator components MED14 (SWP) and CDK8 (HEN3) to repress transcription
-
Gonzalez D, Bowen AJ, Carroll TS, Conlan RS (2007) The transcription corepressor LEUNIG interacts with the histone deacetylase HDA19 and mediator components MED14 (SWP) and CDK8 (HEN3) to repress transcription. Mol Cell Biol 27: 5306-5315
-
(2007)
Mol Cell Biol
, vol.27
, pp. 5306-5315
-
-
Gonzalez, D.1
Bowen, A.J.2
Carroll, T.S.3
Conlan, R.S.4
-
30
-
-
33745459045
-
AGL24, SHORT VEGETATIVE PHASE, and APETALA1 redundantly control AGAMOUS during early stages of flower development in Arabidopsis
-
Gregis V, Sessa A, Colombo L, Kater MM (2006) AGL24, SHORT VEGETATIVE PHASE, and APETALA1 redundantly control AGAMOUS during early stages of flower development in Arabidopsis. Plant Cell 18: 1373-1382
-
(2006)
Plant Cell
, vol.18
, pp. 1373-1382
-
-
Gregis, V.1
Sessa, A.2
Colombo, L.3
Kater, M.M.4
-
32
-
-
0027169185
-
Functional domains of the Drosophila Engrailed protein
-
Han K, Manley JL (1993) Functional domains of the Drosophila Engrailed protein. EMBO J 12: 2723-2733
-
(1993)
Embo J
, vol.12
, pp. 2723-2733
-
-
Han, K.1
Manley, J.L.2
-
33
-
-
0029978521
-
Active repression mechanisms of eukaryotic transcription repressors
-
Hanna-Rose W, Hansen U (1996) Active repression mechanisms of eukaryotic transcription repressors. Trends Genet 12: 229-234
-
(1996)
Trends Genet
, vol.12
, pp. 229-234
-
-
Hanna-Rose, W.1
Hansen, U.2
-
34
-
-
14844351538
-
BZR1 is a transcriptional repressor with dual roles in brassinosteroid homeostasis and growth responses
-
He JX, Gendron JM, Sun Y, Gampala SS, Gendron N, Sun CQ, Wang ZY (2005) BZR1 is a transcriptional repressor with dual roles in brassinosteroid homeostasis and growth responses. Science 307: 1634-1638
-
(2005)
Science
, vol.307
, pp. 1634-1638
-
-
He, J.X.1
Gendron, J.M.2
Sun, Y.3
Gampala, S.S.4
Gendron, N.5
Sun, C.Q.6
Wang, Z.Y.7
-
35
-
-
38549127781
-
PhosPhAt: A database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor
-
Heazlewood JL, Durek P, Hummel J, Selbig J, Weckwerth W, Walther D, Schulze WX (2008) PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Res 36: D1015-D1021
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Heazlewood, J.L.1
Durek, P.2
Hummel, J.3
Selbig, J.4
Weckwerth, W.5
Walther, D.6
Schulze, W.X.7
-
36
-
-
37249087892
-
A transcriptional repression motif in the MADS factor AGL15 is involved in recruitment of histone deacetylase complex components
-
Hill K, Wang H, Perry SE (2008) A transcriptional repression motif in the MADS factor AGL15 is involved in recruitment of histone deacetylase complex components. Plant J 53: 172-185
-
(2008)
Plant J
, vol.53
, pp. 172-185
-
-
Hill, K.1
Wang, H.2
Perry, S.E.3
-
37
-
-
0038806468
-
Dominant repression of target genes by chimeric repressors that include the EAR motif, a repression domain, in Arabidopsis
-
Hiratsu K, Matsui K, Koyama T, Ohme-Takagi M (2003) Dominant repression of target genes by chimeric repressors that include the EAR motif, a repression domain, in Arabidopsis. Plant J 34: 733-739
-
(2003)
Plant J
, vol.34
, pp. 733-739
-
-
Hiratsu, K.1
Matsui, K.2
Koyama, T.3
Ohme-Takagi, M.4
-
38
-
-
3543007738
-
Identification of the minimal repression domain of SUPERMAN shows that the DLELRL hexapeptide is both necessary and sufficient for repression of transcription in Arabidopsis
-
Hiratsu K, Mitsuda N, Matsui K, Ohme-Takagi M (2004) Identification of the minimal repression domain of SUPERMAN shows that the DLELRL hexapeptide is both necessary and sufficient for repression of transcription in Arabidopsis. Biochem Biophys Res Commun 321: 172-178
-
(2004)
Biochem Biophys Res Commun
, vol.321
, pp. 172-178
-
-
Hiratsu, K.1
Mitsuda, N.2
Matsui, K.3
Ohme-Takagi, M.4
-
39
-
-
0037070613
-
The SUPERMAN protein is an active repressor whose carboxy-terminal repression domain is required for the development of normal flowers
-
Hiratsu K, Ohta M, Matsui K, Ohme-Takagi M (2002) The SUPERMAN protein is an active repressor whose carboxy-terminal repression domain is required for the development of normal flowers. FEBS Lett 514: 351-354
-
(2002)
Febs Lett
, vol.514
, pp. 351-354
-
-
Hiratsu, K.1
Ohta, M.2
Matsui, K.3
Ohme-Takagi, M.4
-
40
-
-
66149083210
-
A novel group of transcriptional repressors in Arabidopsis
-
Ikeda M, Ohme-Takagi M (2009) A novel group of transcriptional repressors in Arabidopsis. Plant Cell Physiol 50: 970-975
-
(2009)
Plant Cell Physiol
, vol.50
, pp. 970-975
-
-
Ikeda, M.1
Ohme-Takagi, M.2
-
41
-
-
0036016847
-
The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper
-
Iwakawa H, Ueno Y, Semiarti E, Onouchi H, Kojima S, Tsukaya H, Hasebe M, Soma T, Ikezaki M, Machida C, et al (2002) The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper. Plant Cell Physiol 43: 467-478
-
(2002)
Plant Cell Physiol
, vol.43
, pp. 467-478
-
-
Iwakawa, H.1
Ueno, Y.2
Semiarti, E.3
Onouchi, H.4
Kojima, S.5
Tsukaya, H.6
Hasebe, M.7
Soma, T.8
Ikezaki, M.9
Machida, C.10
-
42
-
-
0036516002
-
bZIP transcription factors in Arabidopsis
-
Jakoby M, Weisshaar B, Droge-Laser W, Vicente-Carbajosa J, Tiedemann J, Kroj T, Parcy F (2002) bZIP transcription factors in Arabidopsis. Trends Plant Sci 7: 106-111
-
(2002)
Trends Plant Sci
, vol.7
, pp. 106-111
-
-
Jakoby, M.1
Weisshaar, B.2
Droge-Laser, W.3
Vicente-Carbajosa, J.4
Tiedemann, J.5
Kroj, T.6
Parcy, F.7
-
43
-
-
38349014541
-
SAZ, a new SUPERMAN-like protein, negatively regulates a subset of ABA-responsive genes in Arabidopsis
-
Jiang CJ, Aono M, Tamaoki M, Maeda S, Sugano S, Mori M, Takatsuji H (2008) SAZ, a new SUPERMAN-like protein, negatively regulates a subset of ABA-responsive genes in Arabidopsis. Mol Genet Genomics 279: 183-192
-
(2008)
Mol Genet Genomics
, vol.279
, pp. 183-192
-
-
Jiang, C.J.1
Aono, M.2
Tamaoki, M.3
Maeda, S.4
Sugano, S.5
Mori, M.6
Takatsuji, H.7
-
44
-
-
0034669209
-
Transcriptional repression by AtMYB4 controls production of UV-protecting sunscreens in Arabidopsis
-
Jin H, Cominelli E, Bailey P, Parr A, Mehrtens F, Jones J, Tonelli C, Weisshaar B, Martin C (2000) Transcriptional repression by AtMYB4 controls production of UV-protecting sunscreens in Arabidopsis. EMBO J 19: 6150-6161
-
(2000)
Embo J
, vol.19
, pp. 6150-6161
-
-
Jin, H.1
Cominelli, E.2
Bailey, P.3
Parr, A.4
Mehrtens, F.5
Jones, J.6
Tonelli, C.7
Weisshaar, B.8
Martin, C.9
-
45
-
-
0033227377
-
Multifunctionality and diversity within the plant MYB-gene family
-
Jin H, Martin C (1999) Multifunctionality and diversity within the plant MYB-gene family. Plant Mol Biol 41: 577-585
-
(1999)
Plant Mol Biol
, vol.41
, pp. 577-585
-
-
Jin, H.1
Martin, C.2
-
47
-
-
33644849175
-
Negative regulation of defence and stress genes by EARmotif-containing repressors
-
Kazan K (2006) Negative regulation of defence and stress genes by EARmotif-containing repressors. Trends Plant Sci 11: 109-112
-
(2006)
Trends Plant Sci
, vol.11
, pp. 109-112
-
-
Kazan, K.1
-
48
-
-
33646832339
-
Analysis of the transcription factor WUSCHEL and its functional homologue in Antirrhinum reveals a potential mechanism for their roles in meristem maintenance
-
Kieffer M, Stern Y, Cook H, Clerici E, Maulbetsch C, Laux T, Davies B (2006) Analysis of the transcription factor WUSCHEL and its functional homologue in Antirrhinum reveals a potential mechanism for their roles in meristem maintenance. Plant Cell 18: 560-573
-
(2006)
Plant Cell
, vol.18
, pp. 560-573
-
-
Kieffer, M.1
Stern, Y.2
Cook, H.3
Clerici, E.4
Maulbetsch, C.5
Laux, T.6
Davies, B.7
-
49
-
-
34247200577
-
The AtGenExpress global stress expression data set: Protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses
-
Kilian J, Whitehead D, Horak J, Wanke D, Weinl S, Batistic O, D'Angelo C, Bornberg-Bauer E, Kudla J, Harter K (2007) The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. Plant J 50: 347-363
-
(2007)
Plant J
, vol.50
, pp. 347-363
-
-
Kilian, J.1
Whitehead, D.2
Horak, J.3
Wanke, D.4
Weinl, S.5
Batistic, O.6
D'angelo, C.7
Bornberg-Bauer, E.8
Kudla, J.9
Harter, K.10
-
50
-
-
0032191287
-
Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana
-
Kranz HD, Denekamp M, Greco R, Jin H, Leyva A, Meissner RC, Petroni K, Urzainqui A, Bevan M, Martin C, et al (1998) Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana. Plant J 16: 263-276
-
(1998)
Plant J
, vol.16
, pp. 263-276
-
-
Kranz, H.D.1
Denekamp, M.2
Greco, R.3
Jin, H.4
Leyva, A.5
Meissner, R.C.6
Petroni, K.7
Urzainqui, A.8
Bevan, M.9
Martin, C.10
-
51
-
-
33644852133
-
RABBIT EARS is a second-whorl repressor of AGAMOUS that maintains spatial boundaries in Arabidopsis flowers
-
Krizek BA, Lewis MW, Fletcher JC (2006) RABBIT EARS is a second-whorl repressor of AGAMOUS that maintains spatial boundaries in Arabidopsis flowers. Plant J 45: 369-383
-
(2006)
Plant J
, vol.45
, pp. 369-383
-
-
Krizek, B.A.1
Lewis, M.W.2
Fletcher, J.C.3
-
52
-
-
35748959369
-
The Arabidopsis BEL1-LIKE HOMEODOMAIN proteins SAW1 and SAW2 act redundantly to regulate KNOX expression spatially in leaf margins
-
Kumar R, Kushalappa K, Godt D, Pidkowich MS, Pastorelli S, Hepworth SR, Haughn GW (2007) The Arabidopsis BEL1-LIKE HOMEODOMAIN proteins SAW1 and SAW2 act redundantly to regulate KNOX expression spatially in leaf margins. Plant Cell 19: 2719-2735
-
(2007)
Plant Cell
, vol.19
, pp. 2719-2735
-
-
Kumar, R.1
Kushalappa, K.2
Godt, D.3
Pidkowich, M.S.4
Pastorelli, S.5
Hepworth, S.R.6
Haughn, G.W.7
-
53
-
-
57749121934
-
NAC family proteins NARS1/NAC2 and NARS2/NAM in the outer integument regulate embryogenesis in Arabidopsis
-
Kunieda T, Mitsuda N, Ohme-Takagi M, Takeda S, Aida M, Tasaka M, Kondo M, Nishimura M, Hara-Nishimura I (2008) NAC family proteins NARS1/NAC2 and NARS2/NAM in the outer integument regulate embryogenesis in Arabidopsis. Plant Cell 20: 2631-2642
-
(2008)
Plant Cell
, vol.20
, pp. 2631-2642
-
-
Kunieda, T.1
Mitsuda, N.2
Ohme-Takagi, M.3
Takeda, S.4
Aida, M.5
Tasaka, M.6
Kondo, M.7
Nishimura, M.8
Hara-Nishimura, I.9
-
54
-
-
0038038452
-
Molecular and biochemical characterization of VREILs encoding mung bean ETHYLENE INSENSITIVE3-LIKE proteins
-
Lee JH, Kim WT (2003) Molecular and biochemical characterization of VREILs encoding mung bean ETHYLENE INSENSITIVE3-LIKE proteins. Plant Physiol 132: 1475-1488
-
(2003)
Plant Physiol
, vol.132
, pp. 1475-1488
-
-
Lee, J.H.1
Kim, W.T.2
-
55
-
-
29244489097
-
WUSCHEL controls meristem function by direct regulation of cytokinin-inducible response regulators
-
Leibfried A, To JP, Busch W, Stehling S, Kehle A, Demar M, Kieber JJ, Lohmann JU (2005) WUSCHEL controls meristem function by direct regulation of cytokinin-inducible response regulators. Nature 438: 1172-1175
-
(2005)
Nature
, vol.438
, pp. 1172-1175
-
-
Leibfried, A.1
To, J.P.2
Busch, W.3
Stehling, S.4
Kehle, A.5
Demar, M.6
Kieber, J.J.7
Lohmann, J.U.8
-
56
-
-
0141519279
-
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
-
Li L, Stoeckert CJ Jr, Roos DS (2003) OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res 13: 2178-2189
-
(2003)
Genome Res
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert Jr, C.J.2
Roos, D.S.3
-
57
-
-
0028336737
-
Mapping and mutagenesis of the amino-terminal transcriptional repression domain of the Drosophila Kruppel protein
-
Licht JD, Hanna-Rose W, Reddy JC, English MA, Ro M, Grossel M, Shaknovich R, Hansen U (1994) Mapping and mutagenesis of the amino-terminal transcriptional repression domain of the Drosophila Kruppel protein. Mol Cell Biol 14: 4057-4066
-
(1994)
Mol Cell Biol
, vol.14
, pp. 4057-4066
-
-
Licht, J.D.1
Hanna-Rose, W.2
Reddy, J.C.3
English, M.A.4
Ro, M.5
Grossel, M.6
Shaknovich, R.7
Hansen, U.8
-
58
-
-
0142028834
-
The Arabidopsis LATERAL ORGAN BOUNDARIES-domain gene ASYMMETRIC LEAVES2 functions in the repression of KNOX gene expression and in adaxial-abaxial patterning
-
Lin WC, Shuai B, Springer PS (2003) The Arabidopsis LATERAL ORGAN BOUNDARIES-domain gene ASYMMETRIC LEAVES2 functions in the repression of KNOX gene expression and in adaxial-abaxial patterning. Plant Cell 15: 2241-2252
-
(2003)
Plant Cell
, vol.15
, pp. 2241-2252
-
-
Lin, W.C.1
Shuai, B.2
Springer, P.S.3
-
59
-
-
0035999460
-
Genetics of Aux/IAA and ARF action in plant growth and development
-
Liscum E, Reed JW (2002) Genetics of Aux/IAA and ARF action in plant growth and development. Plant Mol Biol 49: 387-400
-
(2002)
Plant Mol Biol
, vol.49
, pp. 387-400
-
-
Liscum, E.1
Reed, J.W.2
-
60
-
-
33744992478
-
TOPLESS regulates apical embryonic fate in Arabidopsis
-
Long JA, Ohno C, Smith ZR, Meyerowitz EM (2006) TOPLESS regulates apical embryonic fate in Arabidopsis. Science 312: 1520-1523
-
(2006)
Science
, vol.312
, pp. 1520-1523
-
-
Long, J.A.1
Ohno, C.2
Smith, Z.R.3
Meyerowitz, E.M.4
-
61
-
-
51249110324
-
AtMYBL2, a protein with a single MYB domain, acts as a negative regulator of anthocyanin biosynthesis in Arabidopsis
-
Matsui K, Umemura Y, Ohme-Takagi M (2008) AtMYBL2, a protein with a single MYB domain, acts as a negative regulator of anthocyanin biosynthesis in Arabidopsis. Plant J 55: 954-967
-
(2008)
Plant J
, vol.55
, pp. 954-967
-
-
Matsui, K.1
Umemura, Y.2
Ohme-Takagi, M.3
-
62
-
-
33644655130
-
Repressorand activator-type ethylene response factors functioning in jasmonate signaling and disease resistance identified via a genome-wide screen of Arabidopsis transcription factor gene expression
-
McGrath KC, Dombrecht B, Manners JM, Schenk PM, Edgar CI, Maclean DJ, Scheible WR, Udvardi MK, Kazan K (2005) Repressorand activator-type ethylene response factors functioning in jasmonate signaling and disease resistance identified via a genome-wide screen of Arabidopsis transcription factor gene expression. Plant Physiol 139: 949-959
-
(2005)
Plant Physiol
, vol.139
, pp. 949-959
-
-
McGrath, K.C.1
Dombrecht, B.2
Manners, J.M.3
Schenk, P.M.4
Edgar, C.I.5
Maclean, D.J.6
Scheible, W.R.7
Udvardi, M.K.8
Kazan, K.9
-
63
-
-
18744388016
-
Integration of flowering signals in winter-annual Arabidopsis
-
Michaels SD, Himelblau E, Kim SY, Schomburg FM, Amasino RM (2005) Integration of flowering signals in winter-annual Arabidopsis. Plant Physiol 137: 149-156
-
(2005)
Plant Physiol
, vol.137
, pp. 149-156
-
-
Michaels, S.D.1
Himelblau, E.2
Kim, S.Y.3
Schomburg, F.M.4
Amasino, R.M.5
-
64
-
-
34447631354
-
Gain- and loss-of-function mutations in Zat10 enhance the tolerance of plants to abiotic stress
-
Mittler R, Kim Y, Song L, Coutu J, Coutu A, Ciftci-Yilmaz S, Lee H, Stevenson B, Zhu JK (2006) Gain- and loss-of-function mutations in Zat10 enhance the tolerance of plants to abiotic stress. FEBS Lett 580: 6537-6542
-
(2006)
Febs Lett
, vol.580
, pp. 6537-6542
-
-
Mittler, R.1
Kim, Y.2
Song, L.3
Coutu, J.4
Coutu, A.5
Ciftci-Yilmaz, S.6
Lee, H.7
Stevenson, B.8
Zhu, J.K.9
-
65
-
-
0042836780
-
Antiquity and evolution of the MADS-box gene family controlling flower development in plants
-
Nam J, dePamphilis CW, Ma H, Nei M (2003) Antiquity and evolution of the MADS-box gene family controlling flower development in plants. Mol Biol Evol 20: 1435-1447
-
(2003)
Mol Biol Evol
, vol.20
, pp. 1435-1447
-
-
Nam, J.1
Depamphilis, C.W.2
Ma, H.3
Nei, M.4
-
66
-
-
0034804489
-
Arabidopsis and the heat stress transcription factor world: How many heat stress transcription factors do we need?
-
Nover L, Bharti K, Doring P, Mishra SK, Ganguli A, Scharf KD (2001) Arabidopsis and the heat stress transcription factor world: how many heat stress transcription factors do we need? Cell Stress Chaperones 6: 177-189
-
(2001)
Cell Stress Chaperones
, vol.6
, pp. 177-189
-
-
Nover, L.1
Bharti, K.2
Doring, P.3
Mishra, S.K.4
Ganguli, A.5
Scharf, K.D.6
-
67
-
-
0035080484
-
Negative autoregulation of the Arabidopsis homeobox gene ATHB-2
-
Ohgishi M, Oka A, Morelli G, Ruberti I, Aoyama T (2001) Negative autoregulation of the Arabidopsis homeobox gene ATHB-2. Plant J 25: 389-398
-
(2001)
Plant J
, vol.25
, pp. 389-398
-
-
Ohgishi, M.1
Oka, A.2
Morelli, G.3
Ruberti, I.4
Aoyama, T.5
-
68
-
-
1642340500
-
The Arabidopsis JAGGED gene encodes a zinc finger protein that promotes leaf tissue development
-
Ohno CK, Reddy GV, Heisler MG, Meyerowitz EM (2004) The Arabidopsis JAGGED gene encodes a zinc finger protein that promotes leaf tissue development. Development 131: 1111-1122
-
(2004)
Development
, vol.131
, pp. 1111-1122
-
-
Ohno, C.K.1
Reddy, G.V.2
Heisler, M.G.3
Meyerowitz, E.M.4
-
69
-
-
0034860366
-
Repression domains of class II ERF transcriptional repressors share an essential motif for active repression
-
Ohta M, Matsui K, Hiratsu K, Shinshi H, Ohme-Takagi M (2001) Repression domains of class II ERF transcriptional repressors share an essential motif for active repression. Plant Cell 13: 1959-1968
-
(2001)
Plant Cell
, vol.13
, pp. 1959-1968
-
-
Ohta, M.1
Matsui, K.2
Hiratsu, K.3
Shinshi, H.4
Ohme-Takagi, M.5
-
70
-
-
67650487252
-
The Evolution of Nuclear Auxin Signalling
-
Paponov IA, Teale W, Lang D, Paponov M, Reski R, Rensing SA, Palme K (2009) The evolution of nuclear auxin signalling. BMC Evol Biol 9: 126
-
(2009)
BMC Evol Biol
, vol.9
, pp. 126
-
-
Paponov, I.A.1
Teale, W.2
Lang, D.3
Paponov, M.4
Reski, R.5
Rensing, S.A.6
Palme, K.7
-
71
-
-
4444330319
-
KNUCKLES (KNU) encodes a C2H2 zinc-finger protein that regulates development of basal pattern elements of the Arabidopsis gynoecium
-
Payne T, Johnson SD, Koltunow AM (2004) KNUCKLES (KNU) encodes a C2H2 zinc-finger protein that regulates development of basal pattern elements of the Arabidopsis gynoecium. Development 131: 3737-3749
-
(2004)
Development
, vol.131
, pp. 3737-3749
-
-
Payne, T.1
Johnson, S.D.2
Koltunow, A.M.3
-
72
-
-
0030916336
-
What's up and down with histone deacetylation and transcription?
-
Pazin MJ, Kadonaga JT (1997) What's up and down with histone deacetylation and transcription? Cell 89: 325-328
-
(1997)
Cell
, vol.89
, pp. 325-328
-
-
Pazin, M.J.1
Kadonaga, J.T.2
-
73
-
-
0034930959
-
APETALA1 and SEPALLATA3 interact to promote flower development
-
Pelaz S, Gustafson-Brown C, Kohalmi SE, Crosby WL, Yanofsky MF (2001) APETALA1 and SEPALLATA3 interact to promote flower development. Plant J 26: 385-394
-
(2001)
Plant J
, vol.26
, pp. 385-394
-
-
Pelaz, S.1
Gustafson-Brown, C.2
Kohalmi, S.E.3
Crosby, W.L.4
Yanofsky, M.F.5
-
74
-
-
11144242220
-
AtMYB32 is required for normal pollen development in Arabidopsis thaliana
-
Preston J, Wheeler J, Heazlewood J, Li SF, Parish RW (2004) AtMYB32 is required for normal pollen development in Arabidopsis thaliana. Plant J 40: 979-995
-
(2004)
Plant J
, vol.40
, pp. 979-995
-
-
Preston, J.1
Wheeler, J.2
Heazlewood, J.3
Li, S.F.4
Parish, R.W.5
-
75
-
-
0034671865
-
Arabidopsis transcription factors: Genome-wide comparative analysis among eukaryotes
-
Riechmann JL, Heard J, Martin G, Reuber L, Jiang C, Keddie J, Adam L, Pineda O, Ratcliffe OJ, Samaha RR, et al (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290: 2105-2110
-
(2000)
Science
, vol.290
, pp. 2105-2110
-
-
Riechmann, J.L.1
Heard, J.2
Martin, G.3
Reuber, L.4
Jiang, C.5
Keddie, J.6
Adam, L.7
Pineda, O.8
Ratcliffe, O.J.9
Samaha, R.R.10
-
76
-
-
1642564552
-
The zinc finger protein Zat12 is required for cytosolic ascorbate peroxidase 1 expression during oxidative stress in Arabidopsis
-
Rizhsky L, Davletova S, Liang H, Mittler R (2004) The zinc finger protein Zat12 is required for cytosolic ascorbate peroxidase 1 expression during oxidative stress in Arabidopsis. J Biol Chem 279: 11736-11743
-
(2004)
J Biol Chem
, vol.279
, pp. 11736-11743
-
-
Rizhsky, L.1
Davletova, S.2
Liang, H.3
Mittler, R.4
-
77
-
-
0028828227
-
Role of SUPERMAN in maintaining Arabidopsis floral whorl boundaries
-
Sakai H, Medrano LJ, Meyerowitz EM (1995) Role of SUPERMAN in maintaining Arabidopsis floral whorl boundaries. Nature 378: 199-203
-
(1995)
Nature
, vol.378
, pp. 199-203
-
-
Sakai, H.1
Medrano, L.J.2
Meyerowitz, E.M.3
-
78
-
-
13744249154
-
Arabidopsis Cys2/His2-type zinc-finger proteins function as transcription repressors under drought, cold, and high-salinity stress conditions
-
Sakamoto H, Maruyama K, Sakuma Y, Meshi T, Iwabuchi M, Shinozaki K, Yamaguchi-Shinozaki K (2004) Arabidopsis Cys2/His2-type zinc-finger proteins function as transcription repressors under drought, cold, and high-salinity stress conditions. Plant Physiol 136: 2734-2746
-
(2004)
Plant Physiol
, vol.136
, pp. 2734-2746
-
-
Sakamoto, H.1
Maruyama, K.2
Sakuma, Y.3
Meshi, T.4
Iwabuchi, M.5
Shinozaki, K.6
Yamaguchi-Shinozaki, K.7
-
79
-
-
0036954020
-
The HAT2 gene, a member of the HD-Zip gene family, isolated as an auxin inducible gene by DNA microarray screening, affects auxin response in Arabidopsis
-
Sawa S, Ohgishi M, Goda H, Higuchi K, Shimada Y, Yoshida S, Koshiba T (2002) The HAT2 gene, a member of the HD-Zip gene family, isolated as an auxin inducible gene by DNA microarray screening, affects auxin response in Arabidopsis. Plant J 32: 1011-1022
-
(2002)
Plant J
, vol.32
, pp. 1011-1022
-
-
Sawa, S.1
Ohgishi, M.2
Goda, H.3
Higuchi, K.4
Shimada, Y.5
Yoshida, S.6
Koshiba, T.7
-
80
-
-
16244362244
-
A gene expression map of Arabidopsis thaliana development
-
Schmid M, Davison TS, Henz SR, Pape UJ, Demar M, Vingron M, Scholkopf B, Weigel D, Lohmann JU (2005) A gene expression map of Arabidopsis thaliana development. Nat Genet 37: 501-506
-
(2005)
Nat Genet
, vol.37
, pp. 501-506
-
-
Schmid, M.1
Davison, T.S.2
Henz, S.R.3
Pape, U.J.4
Demar, M.5
Vingron, M.6
Scholkopf, B.7
Weigel, D.8
Lohmann, J.U.9
-
81
-
-
0034985159
-
The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana regulates formation of a symmetric lamina, establishment of venation and repression of meristem-related homeobox genes in leaves
-
Semiarti E, Ueno Y, Tsukaya H, Iwakawa H, Machida C, Machida Y (2001) The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana regulates formation of a symmetric lamina, establishment of venation and repression of meristem-related homeobox genes in leaves. Development 128: 1771-1783
-
(2001)
Development
, vol.128
, pp. 1771-1783
-
-
Semiarti, E.1
Ueno, Y.2
Tsukaya, H.3
Iwakawa, H.4
Machida, C.5
Machida, Y.6
-
82
-
-
1642528831
-
Post-translational modifications and their biological functions: Proteomic analysis and systematic approaches
-
Seo J, Lee KJ (2004) Post-translational modifications and their biological functions: proteomic analysis and systematic approaches. J Biochem Mol Biol 37: 35-44
-
(2004)
J Biochem Mol Biol
, vol.37
, pp. 35-44
-
-
Seo, J.1
Lee, K.J.2
-
83
-
-
27744556379
-
Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses
-
Song CP, Agarwal M, Ohta M, Guo Y, Halfter U, Wang P, Zhu JK (2005) Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses. Plant Cell 17: 2384-2396
-
(2005)
Plant Cell
, vol.17
, pp. 2384-2396
-
-
Song, C.P.1
Agarwal, M.2
Ohta, M.3
Guo, Y.4
Halfter, U.5
Wang, P.6
Zhu, J.K.7
-
84
-
-
42149143483
-
The utility of transcription factors for manipulation of floral traits
-
Shikata M, Ohme-Takagi M (2008) The utility of transcription factors for manipulation of floral traits. Plant Biotechnol 25: 31-36
-
(2008)
Plant Biotechnol
, vol.25
, pp. 31-36
-
-
Shikata, M.1
Ohme-Takagi, M.2
-
85
-
-
3843094797
-
Transcriptional repression of target genes by LEUNIG and SEUSS, two interacting regulatory proteins for Arabidopsis flower development
-
Sridhar VV, Surendrarao A, Gonzalez D, Conlan RS, Liu Z (2004) Transcriptional repression of target genes by LEUNIG and SEUSS, two interacting regulatory proteins for Arabidopsis flower development. Proc Natl Acad Sci USA 101: 11494-11499
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 11494-11499
-
-
Sridhar, V.V.1
Surendrarao, A.2
Gonzalez, D.3
Conlan, R.S.4
Liu, Z.5
-
86
-
-
33748795801
-
APETALA1 and SEPALLATA3 interact with SEUSS to mediate transcription repression during flower development
-
Sridhar VV, Surendrarao A, Liu Z (2006) APETALA1 and SEPALLATA3 interact with SEUSS to mediate transcription repression during flower development. Development 133: 3159-3166
-
(2006)
Development
, vol.133
, pp. 3159-3166
-
-
Sridhar, V.V.1
Surendrarao, A.2
Liu, Z.3
-
87
-
-
0032735095
-
Shade avoidance responses are mediated by the ATHB-2 HD-zip protein, a negative regulator of gene expression
-
Steindler C, Matteucci A, Sessa G, Weimar T, Ohgishi M, Aoyama T, Morelli G, Ruberti I (1999) Shade avoidance responses are mediated by the ATHB-2 HD-zip protein, a negative regulator of gene expression. Development 126: 4235-4245
-
(1999)
Development
, vol.126
, pp. 4235-4245
-
-
Steindler, C.1
Matteucci, A.2
Sessa, G.3
Weimar, T.4
Ohgishi, M.5
Aoyama, T.6
Morelli, G.7
Ruberti, I.8
-
88
-
-
34247257356
-
Repression of the LEAFY COTYLEDON 1/B3 regulatory network in plant embryo development by VP1/ABSCISIC ACID INSENSITIVE 3-LIKE B3 genes
-
Suzuki M, Wang HH, McCarty DR (2007) Repression of the LEAFY COTYLEDON 1/B3 regulatory network in plant embryo development by VP1/ABSCISIC ACID INSENSITIVE 3-LIKE B3 genes. Plant Physiol 143: 902-911
-
(2007)
Plant Physiol
, vol.143
, pp. 902-911
-
-
Suzuki, M.1
Wang, H.H.2
McCarty, D.R.3
-
89
-
-
40449131628
-
TOPLESS mediates auxindependent transcriptional repression during Arabidopsis embryogenesis
-
Szemenyei H, Hannon M, Long JA (2008) TOPLESS mediates auxindependent transcriptional repression during Arabidopsis embryogenesis. Science 319: 1384-1386
-
(2008)
Science
, vol.319
, pp. 1384-1386
-
-
Szemenyei, H.1
Hannon, M.2
Long, J.A.3
-
90
-
-
3242811226
-
How mammalian transcriptional repressors work
-
Thiel G, Lietz M, Hohl M (2004) How mammalian transcriptional repressors work. Eur J Biochem 271: 2855-2862
-
(2004)
Eur J Biochem
, vol.271
, pp. 2855-2862
-
-
Thiel, G.1
Lietz, M.2
Hohl, M.3
-
91
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
92
-
-
1042290638
-
Aux/IAA proteins contain a potent transcriptional repression domain
-
Tiwari SB, Hagen G, Guilfoyle TJ (2004) Aux/IAA proteins contain a potent transcriptional repression domain. Plant Cell 16: 533-543
-
(2004)
Plant Cell
, vol.16
, pp. 533-543
-
-
Tiwari, S.B.1
Hagen, G.2
Guilfoyle, T.J.3
-
93
-
-
0035542787
-
AUX/IAA proteins are active repressors, and their stability and activity are modulated by auxin
-
Tiwari SB, Wang XJ, Hagen G, Guilfoyle TJ (2001) AUX/IAA proteins are active repressors, and their stability and activity are modulated by auxin. Plant Cell 13: 2809-2822
-
(2001)
Plant Cell
, vol.13
, pp. 2809-2822
-
-
Tiwari, S.B.1
Wang, X.J.2
Hagen, G.3
Guilfoyle, T.J.4
-
94
-
-
22044437388
-
The Botany Array Resource: E-northerns, expression angling, and promoter analyses
-
Toufighi K, Brady SM, Austin R, Ly E, Provart NJ (2005) The Botany Array Resource: e-northerns, expression angling, and promoter analyses. Plant J 43: 153-163
-
(2005)
Plant J
, vol.43
, pp. 153-163
-
-
Toufighi, K.1
Brady, S.M.2
Austin, R.3
Ly, E.4
Provart, N.J.5
-
95
-
-
33847784301
-
Two B3 domain transcriptional repressors prevent sugar-inducible expression of seed maturation genes in Arabidopsis seedlings
-
Tsukagoshi H, Morikami A, Nakamura K (2007) Two B3 domain transcriptional repressors prevent sugar-inducible expression of seed maturation genes in Arabidopsis seedlings. Proc Natl Acad Sci USA 104: 2543-2547
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 2543-2547
-
-
Tsukagoshi, H.1
Morikami, A.2
Nakamura, K.3
-
96
-
-
18444385522
-
Analysis of a sugar response mutant of Arabidopsis identified a novel B3 domain protein that functions as an active transcriptional repressor
-
Tsukagoshi H, Saijo T, Shibata D, Morikami A, Nakamura K (2005) Analysis of a sugar response mutant of Arabidopsis identified a novel B3 domain protein that functions as an active transcriptional repressor. Plant Physiol 138: 675-685
-
(2005)
Plant Physiol
, vol.138
, pp. 675-685
-
-
Tsukagoshi, H.1
Saijo, T.2
Shibata, D.3
Morikami, A.4
Nakamura, K.5
-
97
-
-
70350621072
-
DEAR1, a transcriptional repressor of DREB protein that mediates plant defense and freezing stress responses in Arabidopsis
-
Tsutsui T, Kato W, Asada Y, Sako K, Sato T, Sonoda Y, Kidokoro S, Yamaguchi-Shinozaki K, Tamaoki M, Arakawa K, et al (2009) DEAR1, a transcriptional repressor of DREB protein that mediates plant defense and freezing stress responses in Arabidopsis. J Plant Res 122: 633-643
-
(2009)
J Plant Res
, vol.122
, pp. 633-643
-
-
Tsutsui, T.1
Kato, W.2
Asada, Y.3
Sako, K.4
Sato, T.5
Sonoda, Y.6
Kidokoro, S.7
Yamaguchi-Shinozaki, K.8
Tamaoki, M.9
Arakawa, K.10
-
98
-
-
0031277708
-
Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements
-
Ulmasov T, Murfett J, Hagen G, Guilfoyle TJ (1997) Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements. Plant Cell 9: 1963-1971
-
(1997)
Plant Cell
, vol.9
, pp. 1963-1971
-
-
Ulmasov, T.1
Murfett, J.2
Hagen, G.3
Guilfoyle, T.J.4
-
99
-
-
0036724089
-
Classification of human B-ZIP proteins based on dimerization properties
-
Vinson C, Myakishev M, Acharya A, Mir AA, Moll JR, Bonovich M (2002) Classification of human B-ZIP proteins based on dimerization properties. Mol Cell Biol 22: 6321-6335
-
(2002)
Mol Cell Biol
, vol.22
, pp. 6321-6335
-
-
Vinson, C.1
Myakishev, M.2
Acharya, A.3
Mir, A.A.4
Moll, J.R.5
Bonovich, M.6
-
100
-
-
12844280128
-
Roles of the CBF2 and ZAT12 transcription factors in configuring the low temperature transcriptome of Arabidopsis
-
Vogel JT, Zarka DG, Van Buskirk HA, Fowler SG, Thomashow MF (2005) Roles of the CBF2 and ZAT12 transcription factors in configuring the low temperature transcriptome of Arabidopsis. Plant J 41: 195-211
-
(2005)
Plant J
, vol.41
, pp. 195-211
-
-
Vogel, J.T.1
Zarka, D.G.2
van Buskirk, H.A.3
Fowler, S.G.4
Thomashow, M.F.5
-
101
-
-
0034956872
-
NIMIN-1, NIMIN-2 and NIMIN-3, members of a novel family of proteins from Arabidopsis that interact with NPR1/NIM1, a key regulator of systemic acquired resistance in plants
-
Weigel RR, Bauscher C, Pfitzner AJ, Pfitzner UM (2001) NIMIN-1, NIMIN-2 and NIMIN-3, members of a novel family of proteins from Arabidopsis that interact with NPR1/NIM1, a key regulator of systemic acquired resistance in plants. Plant Mol Biol 46: 143-160
-
(2001)
Plant Mol Biol
, vol.46
, pp. 143-160
-
-
Weigel, R.R.1
Bauscher, C.2
Pfitzner, A.J.3
Pfitzner, U.M.4
-
102
-
-
31344442838
-
Interaction of NIMIN1 with NPR1 modulates PR gene expression in Arabidopsis
-
Weigel RR, Pfitzner UM, Gatz C (2005) Interaction of NIMIN1 with NPR1 modulates PR gene expression in Arabidopsis. Plant Cell 17: 1279-1291
-
(2005)
Plant Cell
, vol.17
, pp. 1279-1291
-
-
Weigel, R.R.1
Pfitzner, U.M.2
Gatz, C.3
-
103
-
-
38949116413
-
Arabidopsis genes AS1, AS2, and JAG negatively regulate boundary-specifying genes to promote sepal and petal development
-
Xu B, Li Z, Zhu Y, Wang H, Ma H, Dong A, Huang H (2008) Arabidopsis genes AS1, AS2, and JAG negatively regulate boundary-specifying genes to promote sepal and petal development. Plant Physiol 146: 566-575
-
(2008)
Plant Physiol
, vol.146
, pp. 566-575
-
-
Xu, B.1
Li, Z.2
Zhu, Y.3
Wang, H.4
Ma, H.5
Dong, A.6
Huang, H.7
-
104
-
-
23144439384
-
PatMatch: A program for finding patterns in peptide and nucleotide sequences
-
Yan T, Yoo D, Berardini TZ, Mueller LA, Weems DC, Weng S, Cherry JM, Rhee SY (2005) PatMatch: a program for finding patterns in peptide and nucleotide sequences. Nucleic Acids Res 33: W262-W266
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Yan, T.1
Yoo, D.2
Berardini, T.Z.3
Mueller, L.A.4
Weems, D.C.5
Weng, S.6
Cherry, J.M.7
Rhee, S.Y.8
-
105
-
-
77449106478
-
Poplar genomics: State of the science
-
Yang W, Kalluri UC, Difazio SP, Wullschleger SD, Tschaplinski TJ, Cheng Z-M, Tuskan GA (2009) Poplar genomics: state of the science. Crit Rev Plant Sci 28: 285-308
-
(2009)
Crit Rev Plant Sci
, vol.28
, pp. 285-308
-
-
Yang, W.1
Kalluri, U.C.2
Difazio, S.P.3
Wullschleger, S.D.4
Tschaplinski, T.J.5
Cheng, Z.-M.6
Tuskan, G.A.7
-
106
-
-
23744460947
-
Arabidopsis ERF4 is a transcriptional repressor capable of modulating ethylene and abscisic acid responses
-
Yang Z, Tian L, Latoszek-Green M, Brown D, Wu K (2005) Arabidopsis ERF4 is a transcriptional repressor capable of modulating ethylene and abscisic acid responses. Plant Mol Biol 58: 585-596
-
(2005)
Plant Mol Biol
, vol.58
, pp. 585-596
-
-
Yang, Z.1
Tian, L.2
Latoszek-Green, M.3
Brown, D.4
Wu, K.5
-
107
-
-
0025371984
-
The protein encoded by the Arabidopsis homeotic gene agamous resembles transcription factors
-
Yanofsky MF, Ma H, Bowman JL, Drews GN, Feldmann KA, Meyerowitz EM (1990) The protein encoded by the Arabidopsis homeotic gene agamous resembles transcription factors. Nature 346: 35-39
-
(1990)
Nature
, vol.346
, pp. 35-39
-
-
Yanofsky, M.F.1
Ma, H.2
Bowman, J.L.3
Drews, G.N.4
Feldmann, K.A.5
Meyerowitz, E.M.6
-
108
-
-
12944297734
-
A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis
-
Yin Y, Vafeados D, Tao Y, Yoshida S, Asami T, Chory J (2005) A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis. Cell 120: 249-259
-
(2005)
Cell
, vol.120
, pp. 249-259
-
-
Yin, Y.1
Vafeados, D.2
Tao, Y.3
Yoshida, S.4
Asami, T.5
Chory, J.6
-
109
-
-
0037250149
-
The TIGR rice genome annotation resource: Annotating the rice genome and creating resources for plant biologists
-
Yuan Q, Ouyang S, Liu J, Suh B, Cheung F, Sultana R, Lee D, Quackenbush J, Buell CR (2003) The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists. Nucleic Acids Res 31: 229-233
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 229-233
-
-
Yuan, Q.1
Ouyang, S.2
Liu, J.3
Suh, B.4
Cheung, F.5
Sultana, R.6
Lee, D.7
Quackenbush, J.8
Buell, C.R.9
-
110
-
-
77949515298
-
Isolation and characterization of a novel EAR-motif-containing gene GmERF4 from soybean (Glycine max L.)
-
Zhang G, Chen M, Chen X, Xu Z, Li L, Guo J, Ma Y (2010) Isolation and characterization of a novel EAR-motif-containing gene GmERF4 from soybean (Glycine max L.). Mol Biol Rep 37: 809-818
-
(2010)
Mol Biol Rep
, vol.37
, pp. 809-818
-
-
Zhang, G.1
Chen, M.2
Chen, X.3
Xu, Z.4
Li, L.5
Guo, J.6
Ma, Y.7
-
111
-
-
33750985700
-
Negative regulation of defense responses in Arabidopsis by two NPR1 paralogs
-
Zhang Y, Cheng YT, Qu N, Zhao Q, Bi D, Li X (2006) Negative regulation of defense responses in Arabidopsis by two NPR1 paralogs. Plant J 48: 647-656
-
(2006)
Plant J
, vol.48
, pp. 647-656
-
-
Zhang, Y.1
Cheng, Y.T.2
Qu, N.3
Zhao, Q.4
Bi, D.5
Li, X.6
-
112
-
-
0032169849
-
Protein sequence similarity searches using patterns as seeds
-
Zhang Z, Schaffer AA, Miller W, Madden TL, Lipman DJ, Koonin EV, Altschul SF (1998) Protein sequence similarity searches using patterns as seeds. Nucleic Acids Res 26: 3986-3990
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 3986-3990
-
-
Zhang, Z.1
Schaffer, A.A.2
Miller, W.3
Madden, T.L.4
Lipman, D.J.5
Koonin, E.V.6
Altschul, S.F.7
-
113
-
-
34547799698
-
EasyGO: Gene Ontology-based annotation and functional enrichment analysis tool for agronomical species
-
Zhou X, Su Z (2007) EasyGO: Gene Ontology-based annotation and functional enrichment analysis tool for agronomical species. BMC Genomics 8: 246
-
(2007)
Bmc Genomics
, vol.8
, pp. 246
-
-
Zhou, X.1
Su, Z.2
-
114
-
-
22244455773
-
HOS10 encodes an R2R3-type MYB transcription factor essential for cold acclimation in plants
-
Zhu J, Verslues PE, Zheng X, Lee BH, Zhan X, Manabe Y, Sokolchik I, Zhu Y, Dong CH, Zhu JK, et al (2005) HOS10 encodes an R2R3-type MYB transcription factor essential for cold acclimation in plants. Proc Natl Acad Sci USA 102: 9966-9971
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 9966-9971
-
-
Zhu, J.1
Verslues, P.E.2
Zheng, X.3
Lee, B.H.4
Zhan, X.5
Manabe, Y.6
Sokolchik, I.7
Zhu, Y.8
Dong, C.H.9
Zhu, J.K.10
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