-
1
-
-
0034730610
-
Alteration of stimulus-specific guard cell calcium oscillations and stomatal closing in the Arabidopsis det3 mutant
-
Allen, G.J., Chu, S.P., Schumacher, K. et al. (2000) Alteration of stimulus-specific guard cell calcium oscillations and stomatal closing in the Arabidopsis det3 mutant. Science, 289, 2338-2342.
-
(2000)
Science
, vol.289
, pp. 2338-2342
-
-
Allen, G.J.1
Chu, S.P.2
Schumacher, K.3
-
2
-
-
3242715114
-
Reactive oxygen species: Metabolism, oxidative stress, and signal transduction
-
Apel, K. and Hirt, H. (2004) Reactive oxygen species: Metabolism, oxidative stress, and signal transduction. Annu. Rev. Plant Biol. 55, 373-399.
-
(2004)
Annu. Rev. Plant Biol
, vol.55
, pp. 373-399
-
-
Apel, K.1
Hirt, H.2
-
3
-
-
33845609562
-
Cismotifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequilibrium in eukaryote genomes using frequency distribution curves
-
Berendzen, K.W., Stüber, K., Harter, K. and Wanke, D. (2006) Cismotifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequilibrium in eukaryote genomes using frequency distribution curves. BMC Bioinformatics, 7, 522-541.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 522-541
-
-
Berendzen, K.W.1
Stüber, K.2
Harter, K.3
Wanke, D.4
-
4
-
-
24644481999
-
Order preserving clustering over multiple time course experiments
-
Bleuler, S. and Zitzler, E. (2005) Order preserving clustering over multiple time course experiments. Lecture Notes in Computer Science, 3449, 33-43.
-
(2005)
Lecture Notes in Computer Science
, vol.3449
, pp. 33-43
-
-
Bleuler, S.1
Zitzler, E.2
-
5
-
-
33344454751
-
Unravelling abiotic stress tolerance mechanisms: Getting genomics going
-
Bohnert, H.J., Gong, Q. and Ma, S. (2006) Unravelling abiotic stress tolerance mechanisms: Getting genomics going. Curr. Opin. Plant Biol. 9, 180-188.
-
(2006)
Curr. Opin. Plant Biol
, vol.9
, pp. 180-188
-
-
Bohnert, H.J.1
Gong, Q.2
Ma, S.3
-
6
-
-
25444461919
-
Vector analysis as a fast and easy method to compare gene expression in responses between different experimental background
-
Breitling, R., Armengaud, P. and Amtmann, A. (2005) Vector analysis as a fast and easy method to compare gene expression in responses between different experimental background. BMC Bioinformatics, 6, 181-188.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 181-188
-
-
Breitling, R.1
Armengaud, P.2
Amtmann, A.3
-
7
-
-
29144433413
-
A UV-B-specific signalling component orchestrates plant UV protection
-
Brown, B.A., Cloix, C., Jiang, G.H., Kaiserli, E., Herzyk, P., Kliebenstein, D.J. and Jenkins, G.I. (2005) A UV-B-specific signalling component orchestrates plant UV protection. Proc. Natl Acad. Sci. USA, 102, 18225-18230.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 18225-18230
-
-
Brown, B.A.1
Cloix, C.2
Jiang, G.H.3
Kaiserli, E.4
Herzyk, P.5
Kliebenstein, D.J.6
Jenkins, G.I.7
-
8
-
-
4644360515
-
Rapid transcriptome responses of maize (Zea mays) to UV-B in irradiated and shielded tissues
-
Casati, P. and Walbot, V. (2004) Rapid transcriptome responses of maize (Zea mays) to UV-B in irradiated and shielded tissues. Genome Biol. 5, R16.
-
(2004)
Genome Biol
, vol.5
-
-
Casati, P.1
Walbot, V.2
-
9
-
-
0035149551
-
Remodeling of yeast genome expression in response to environmental changes
-
Causton, H.C., Ren, B., Koh, S.S., Harbison, C.T., Kanin, E., Jennings, E.G., Lee, T.I., True, H.L., Lander, E.S. and Young, R.A. (2001) Remodeling of yeast genome expression in response to environmental changes. Mol. Biol. Cell, 12, 323-337.
-
(2001)
Mol. Biol. Cell
, vol.12
, pp. 323-337
-
-
Causton, H.C.1
Ren, B.2
Koh, S.S.3
Harbison, C.T.4
Kanin, E.5
Jennings, E.G.6
Lee, T.I.7
True, H.L.8
Lander, E.S.9
Young, R.A.10
-
10
-
-
0036010572
-
Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses
-
Chen, W., Provart, N.J., Glazebrook, J. et al. (2002) Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses. Plant Cell, 14, 559-574.
-
(2002)
Plant Cell
, vol.14
, pp. 559-574
-
-
Chen, W.1
Provart, N.J.2
Glazebrook, J.3
-
11
-
-
12244267727
-
Global transcriptional responses of fission yeast to environmental stress
-
Chen, D., Toone, W.M., Mata, J., Lyne, R., Burns, G., Kivinen, K., Brazma, A., Jones, N. and Bähler, J. (2003) Global transcriptional responses of fission yeast to environmental stress. Mol. Biol. Cell, 14, 214-229.
-
(2003)
Mol. Biol. Cell
, vol.14
, pp. 214-229
-
-
Chen, D.1
Toone, W.M.2
Mata, J.3
Lyne, R.4
Burns, G.5
Kivinen, K.6
Brazma, A.7
Jones, N.8
Bähler, J.9
-
12
-
-
33344455077
-
The zinc-finger protein ZAT12 plays a central role in reactive oxygen and abiotic stress signaling in Arabidopsis
-
Davletova, S., Schlauch, K., Coutu, J. and Mittler, R. (2005) The zinc-finger protein ZAT12 plays a central role in reactive oxygen and abiotic stress signaling in Arabidopsis. Plant Physiol. 139, 847-856.
-
(2005)
Plant Physiol
, vol.139
, pp. 847-856
-
-
Davletova, S.1
Schlauch, K.2
Coutu, J.3
Mittler, R.4
-
13
-
-
0034813646
-
Regulation of the Arabidopsis transcriptome by oxidative stress
-
Desikan, R., A-H-Mackerness, S., Hancock, J.T. and Neill, S.J. (2001) Regulation of the Arabidopsis transcriptome by oxidative stress. Plant Physiol. 127, 159-172.
-
(2001)
Plant Physiol
, vol.127
, pp. 159-172
-
-
Desikan, R.1
A-H-Mackerness, S.2
Hancock, J.T.3
Neill, S.J.4
-
14
-
-
0036671216
-
Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway
-
Fowler, S. and Thomashow, M.F. (2002) Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway. Plant Cell, 14, 1675-1690.
-
(2002)
Plant Cell
, vol.14
, pp. 1675-1690
-
-
Fowler, S.1
Thomashow, M.F.2
-
15
-
-
3042750616
-
Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana
-
Hirai, M.Y., Yano, M., Goodenowe, D.B., Kanaya, S., Kimura, T., Awazuhara, M., Arita, M., Fujiwara, T. and Saito, K. (2004) Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana. Proc. Natl Acad. Sci. USA, 101, 10205-10210.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 10205-10210
-
-
Hirai, M.Y.1
Yano, M.2
Goodenowe, D.B.3
Kanaya, S.4
Kimura, T.5
Awazuhara, M.6
Arita, M.7
Fujiwara, T.8
Saito, K.9
-
16
-
-
11244352554
-
Kernlab - an S4 package for kernel methods in R
-
Karatzoglou, A., Smola, A., Hornik, K. and Zeileis, A. (2004) Kernlab - an S4 package for kernel methods in R. J. Statistical Software, 11, 9.
-
(2004)
J. Statistical Software
, vol.11
, pp. 9
-
-
Karatzoglou, A.1
Smola, A.2
Hornik, K.3
Zeileis, A.4
-
17
-
-
0033990432
-
Calcium signaling during abiotic stress in plants
-
Knight, H. (2000) Calcium signaling during abiotic stress in plants. Int. Rev. Cytol. 195, 269-324.
-
(2000)
Int. Rev. Cytol
, vol.195
, pp. 269-324
-
-
Knight, H.1
-
18
-
-
0035206163
-
Abiotic stress signalling pathways: Specificity and cross-talk
-
Knight, H. and Knight, M.R. (2001) Abiotic stress signalling pathways: specificity and cross-talk. Trends Plant Sci. 6, 262-267.
-
(2001)
Trends Plant Sci
, vol.6
, pp. 262-267
-
-
Knight, H.1
Knight, M.R.2
-
19
-
-
0036909761
-
Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress
-
Kreps, J.A., Wu, Y., Chang, H.-S., Zhu, T., Wang, X. and Harper, J.F. (2002) Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress. Plant Physiol. 130, 2129-2141.
-
(2002)
Plant Physiol
, vol.130
, pp. 2129-2141
-
-
Kreps, J.A.1
Wu, Y.2
Chang, H.-S.3
Zhu, T.4
Wang, X.5
Harper, J.F.6
-
20
-
-
0036017859
-
Cross talk between signalling pathways in pathogen defense
-
Kunkel, B.N. and Brooks, D.M. (2002) Cross talk between signalling pathways in pathogen defense. Curr. Opin. Plant Biol. 5, 325-331.
-
(2002)
Curr. Opin. Plant Biol
, vol.5
, pp. 325-331
-
-
Kunkel, B.N.1
Brooks, D.M.2
-
21
-
-
0343953411
-
The involvement of hydrogen peroxide in plant responses to stresses
-
Kuzniak, E. and Urbanek, H. (2000) The involvement of hydrogen peroxide in plant responses to stresses. Acta Physiol. Plant. 22, 195-203.
-
(2000)
Acta Physiol. Plant
, vol.22
, pp. 195-203
-
-
Kuzniak, E.1
Urbanek, H.2
-
22
-
-
33645025500
-
Dissecting salt stress pathways
-
Ma, S., Gong, Q. and Bohnert, H.J. (2006) Dissecting salt stress pathways. J. Exp. Bot. 57, 1097-1107.
-
(2006)
J. Exp. Bot
, vol.57
, pp. 1097-1107
-
-
Ma, S.1
Gong, Q.2
Bohnert, H.J.3
-
23
-
-
0141857861
-
Stress response, cell death and signalling: The many faces of reactive oxygen species
-
Mahalingam, R. and Fedoroff, N. (2003) Stress response, cell death and signalling: the many faces of reactive oxygen species. Physiol. Plant. 119, 56-68.
-
(2003)
Physiol. Plant
, vol.119
, pp. 56-68
-
-
Mahalingam, R.1
Fedoroff, N.2
-
24
-
-
14744279267
-
-
Sandermann, H.ed, Berlin: Springer, pp
-
Mittler, R. and Zilinskas, B.A. (2004). Molecular Ecotoxicology of Plants. (Sandermann, H.ed.). Berlin: Springer, pp. 51-73.
-
(2004)
Molecular Ecotoxicology of Plants
, pp. 51-73
-
-
Mittler, R.1
Zilinskas, B.A.2
-
25
-
-
0034860366
-
Repression domains of class II ERF transcriptional repressors share an essential motif for active repression
-
Ohta, M., Matsui, K., Hiratsu, K., Shinshi, H. and Ohme-Takagi, M. (2001) Repression domains of class II ERF transcriptional repressors share an essential motif for active repression. Plant Cell, 13, 1959-1968.
-
(2001)
Plant Cell
, vol.13
, pp. 1959-1968
-
-
Ohta, M.1
Matsui, K.2
Hiratsu, K.3
Shinshi, H.4
Ohme-Takagi, M.5
-
26
-
-
0034625364
-
The transcriptional response of yeast to saline stress
-
Posas, F., Chambers, J.R., Heyman, J.A., Hoeffler, J.P., de Nadal, E. and Arino, J. (2000) The transcriptional response of yeast to saline stress. J. Biol. Chem. 275, 17249-17255.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 17249-17255
-
-
Posas, F.1
Chambers, J.R.2
Heyman, J.A.3
Hoeffler, J.P.4
de Nadal, E.5
Arino, J.6
-
27
-
-
2342501846
-
Development and evaluation of an Arabidopsis whole genome Affymetrix probe array
-
Redman, J.C., Haas, B.J., Tanimoto, T. and Town, C.D. (2004) Development and evaluation of an Arabidopsis whole genome Affymetrix probe array. Plant J. 38, 545-561.
-
(2004)
Plant J
, vol.38
, pp. 545-561
-
-
Redman, J.C.1
Haas, B.J.2
Tanimoto, T.3
Town, C.D.4
-
28
-
-
14744281201
-
Balancing the generation and elimination of reactive oxygen species
-
Rodriguez, R. and Redman, R. (2005) Balancing the generation and elimination of reactive oxygen species. Proc. Natl Acad. Sci. USA, 102, 3175-3176.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 3175-3176
-
-
Rodriguez, R.1
Redman, R.2
-
29
-
-
0036851187
-
Global changes in gene expression in response to high light in Arabidopsis
-
Rossel, J.B., Wilson, I.W. and Pogson, B.J. (2002) Global changes in gene expression in response to high light in Arabidopsis. Plant Physiol. 130, 1109-1120.
-
(2002)
Plant Physiol
, vol.130
, pp. 1109-1120
-
-
Rossel, J.B.1
Wilson, I.W.2
Pogson, B.J.3
-
30
-
-
0035999364
-
Synthetic plant promoters containing defined regulatory elements provide novel insights into pathogen- and wound- induced signaling
-
Rushton, P.J., Reinstaedler, A., Lipka, V., Lippok, B. and Somssich, I.E. (2002) Synthetic plant promoters containing defined regulatory elements provide novel insights into pathogen- and wound- induced signaling. Plant Cell, 14, 749-762.
-
(2002)
Plant Cell
, vol.14
, pp. 749-762
-
-
Rushton, P.J.1
Reinstaedler, A.2
Lipka, V.3
Lippok, B.4
Somssich, I.E.5
-
31
-
-
13744249154
-
Arabidopsis Cys2/His2-type zinc-finger proteins function as transcription repressors under drought, cold, and high salinity stress conditions
-
Sakamoto, H., Maruyama, K., Sakuma, Y., Meshi, T., Iwabuchi, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2004) Arabidopsis Cys2/His2-type zinc-finger proteins function as transcription repressors under drought, cold, and high salinity stress conditions. Plant Physiol. 136, 2734-2746.
-
(2004)
Plant Physiol
, vol.136
, pp. 2734-2746
-
-
Sakamoto, H.1
Maruyama, K.2
Sakuma, Y.3
Meshi, T.4
Iwabuchi, M.5
Shinozaki, K.6
Yamaguchi-Shinozaki, K.7
-
32
-
-
0347243182
-
Nonlinear component analysis as a kernel eigenvalue problem
-
Schoelkopf, B., Smola, A. and Mueller, K.-R. (1998) Nonlinear component analysis as a kernel eigenvalue problem. J. Neural Comp. 10, 1299-1319.
-
(1998)
J. Neural Comp
, vol.10
, pp. 1299-1319
-
-
Schoelkopf, B.1
Smola, A.2
Mueller, K.-R.3
-
33
-
-
0035107803
-
Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray
-
Seki, M., Narusaka, M., Abe, H., Kasuga, M., Yamaguchi-Shinozaki, K., Carninci, P., Hayashizaki, Y. and Shinozaki, K. (2001) Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray. Plant Cell, 13, 61-72.
-
(2001)
Plant Cell
, vol.13
, pp. 61-72
-
-
Seki, M.1
Narusaka, M.2
Abe, H.3
Kasuga, M.4
Yamaguchi-Shinozaki, K.5
Carninci, P.6
Hayashizaki, Y.7
Shinozaki, K.8
-
34
-
-
0036679053
-
Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray
-
Seki, M., Narusaka, M., Ishida, J. et al. (2002) Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray. Plant J. 31, 279-292.
-
(2002)
Plant J
, vol.31
, pp. 279-292
-
-
Seki, M.1
Narusaka, M.2
Ishida, J.3
-
35
-
-
0141725442
-
Regulatory network of gene expression in the drought and cold stress responses
-
Shinozaki, K., Yamaguchi-Shinozaki, K. and Seki, M. (2003) Regulatory network of gene expression in the drought and cold stress responses. Curr. Opin. Plant Biol. 6, 410-417.
-
(2003)
Curr. Opin. Plant Biol
, vol.6
, pp. 410-417
-
-
Shinozaki, K.1
Yamaguchi-Shinozaki, K.2
Seki, M.3
-
36
-
-
33845789612
-
The association among gene expression responses to nine abiotic stress treatments in Arabidopsis thaliana
-
doi 10.1534/genetics.106.061374
-
Swindell, W.R. (2006) The association among gene expression responses to nine abiotic stress treatments in Arabidopsis thaliana. Genetics, doi 10.1534/genetics.106.061374.
-
(2006)
Genetics
-
-
Swindell, W.R.1
-
37
-
-
23944460533
-
Signalling and gene regulation in response to ultraviolet light
-
Ulm, R. and Nagy, F. (2005) Signalling and gene regulation in response to ultraviolet light. Curr. Opin. Plant Biol. 8, 477-482.
-
(2005)
Curr. Opin. Plant Biol
, vol.8
, pp. 477-482
-
-
Ulm, R.1
Nagy, F.2
-
38
-
-
0842299514
-
Genome-wide analysis of gene expression reveals function of the bZIP transcription factor HY5 in the UV-B response of Arabidopsis
-
Ulm, R., Baumann, A., Oravecz, A., Máté, Z., Ádám, É., Oakeley, E.J., Schäfer, E. and Nagy, F. (2004) Genome-wide analysis of gene expression reveals function of the bZIP transcription factor HY5 in the UV-B response of Arabidopsis. Proc. Natl Acad. Sci. USA, 101, 1397-1402.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 1397-1402
-
-
Ulm, R.1
Baumann, A.2
Oravecz, A.3
Máté, Z.4
Ádám, E.5
Oakeley, E.J.6
Schäfer, E.7
Nagy, F.8
-
39
-
-
33847290320
-
The regulatory code for transcriptional response diversity and ist relation to genome structural properties in Arabidopsis thaliana
-
doi:10.1371/journal.pgen.0030011.eor
-
Walther, D., Brunnemann, R. and Selbig, J. (2007) The regulatory code for transcriptional response diversity and ist relation to genome structural properties in Arabidopsis thaliana. PLoS Genetics, doi:10.1371/journal.pgen.0030011.eor.
-
(2007)
PLoS Genetics
-
-
Walther, D.1
Brunnemann, R.2
Selbig, J.3
-
40
-
-
34247204536
-
-
Berkeley Electronic Press
-
Wu, Z., Irizarryy, R.A., Gentlemanz, R., Martinez Murillo, F. and Spencer, F. (2004) A model based background adjustment for oligonucleotide expression arrays. Berkeley Electronic Press No. 1001.
-
(2004)
A model based background adjustment for oligonucleotide expression arrays
, Issue.1001
-
-
Wu, Z.1
Irizarryy, R.A.2
Gentlemanz, R.3
Martinez Murillo, F.4
Spencer, F.5
-
41
-
-
0036273511
-
Cell signaling during cold, drought, and salt stress
-
Xiong, L., Schumaker, K.S. and Zhu, J-K. (2002) Cell signaling during cold, drought, and salt stress. Plant Cell, 14 (Supplement 2002), S165-S183.
-
(2002)
Plant Cell
, vol.14
, Issue.SUPPL.EMENT
-
-
Xiong, L.1
Schumaker, K.S.2
Zhu, J.-K.3
|