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Volumn 11, Issue 1, 2010, Pages

Distinct, ecotype-specific genome and proteome signatures in the marine cyanobacteria Prochlorococcus

Author keywords

[No Author keywords available]

Indexed keywords

PROTEOME; BACTERIAL DNA; SPACER DNA;

EID: 77949441084     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-11-103     Document Type: Article
Times cited : (26)

References (56)
  • 1
    • 33749022803 scopus 로고    scopus 로고
    • Analysis of Nanoarchaeum equitans genome and proteome composition: indications for hyperthermophilic and parasitic adaptation
    • 10.1186/1471-2164-7-186, 1574309, 16869956
    • Das S, Paul S, Bag SK, Dutta C. Analysis of Nanoarchaeum equitans genome and proteome composition: indications for hyperthermophilic and parasitic adaptation. BMC Genomics 2006, 7:186. 10.1186/1471-2164-7-186, 1574309, 16869956.
    • (2006) BMC Genomics , vol.7 , pp. 186
    • Das, S.1    Paul, S.2    Bag, S.K.3    Dutta, C.4
  • 2
    • 24944495338 scopus 로고    scopus 로고
    • Codon and amino acid usage in two major human pathogens of genus Bartonella--optimization between replicational-transcriptional selection, translational control and cost minimization
    • 10.1093/dnares/12.2.91, 16303741
    • Das S, Paul S, Chatterjee S, Dutta C. Codon and amino acid usage in two major human pathogens of genus Bartonella--optimization between replicational-transcriptional selection, translational control and cost minimization. DNA Res 2005, 12(2):91-102. 10.1093/dnares/12.2.91, 16303741.
    • (2005) DNA Res , vol.12 , Issue.2 , pp. 91-102
    • Das, S.1    Paul, S.2    Chatterjee, S.3    Dutta, C.4
  • 3
    • 33745662661 scopus 로고    scopus 로고
    • Evolutionary constraints on codon and amino acid usage in two strains of human pathogenic actinobacteria Tropheryma whipplei
    • 10.1007/s00239-005-0164-6, 16557339
    • Das S, Paul S, Dutta C. Evolutionary constraints on codon and amino acid usage in two strains of human pathogenic actinobacteria Tropheryma whipplei. J Mol Evol 2006, 62(5):645-658. 10.1007/s00239-005-0164-6, 16557339.
    • (2006) J Mol Evol , vol.62 , Issue.5 , pp. 645-658
    • Das, S.1    Paul, S.2    Dutta, C.3
  • 4
    • 0028933771 scopus 로고
    • Life in unusual environments: progress in understanding the structure and function of enzymes from extreme halophilic bacteria
    • 10.1006/abbi.1995.1196, 7726549
    • Eisenberg H. Life in unusual environments: progress in understanding the structure and function of enzymes from extreme halophilic bacteria. Arch Biochem Biophys 1995, 318(1):1-5. 10.1006/abbi.1995.1196, 7726549.
    • (1995) Arch Biochem Biophys , vol.318 , Issue.1 , pp. 1-5
    • Eisenberg, H.1
  • 5
    • 0034255952 scopus 로고    scopus 로고
    • Lifestyle evolution in symbiotic bacteria: insights from genomics
    • 10.1016/S0169-5347(00)01902-9, 10884696
    • Moran NA, Wernegreen JJ. Lifestyle evolution in symbiotic bacteria: insights from genomics. Trends Ecol Evol 2000, 15(8):321-326. 10.1016/S0169-5347(00)01902-9, 10884696.
    • (2000) Trends Ecol Evol , vol.15 , Issue.8 , pp. 321-326
    • Moran, N.A.1    Wernegreen, J.J.2
  • 6
    • 47149088683 scopus 로고    scopus 로고
    • Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes
    • 10.1186/gb-2008-9-4-r70, 2643941, 18397532
    • Paul S, Bag SK, Das S, Harvill ET, Dutta C. Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes. Genome Biol 2008, 9(4):R70. 10.1186/gb-2008-9-4-r70, 2643941, 18397532.
    • (2008) Genome Biol , vol.9 , Issue.4
    • Paul, S.1    Bag, S.K.2    Das, S.3    Harvill, E.T.4    Dutta, C.5
  • 7
    • 34547263402 scopus 로고    scopus 로고
    • Microbial extremophiles at the limits of life
    • 10.1080/10408410701451948, 17653987
    • Pikuta EV, Hoover RB, Tang J. Microbial extremophiles at the limits of life. Crit Rev Microbiol 2007, 33(3):183-209. 10.1080/10408410701451948, 17653987.
    • (2007) Crit Rev Microbiol , vol.33 , Issue.3 , pp. 183-209
    • Pikuta, E.V.1    Hoover, R.B.2    Tang, J.3
  • 8
    • 0242290154 scopus 로고    scopus 로고
    • Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content
    • 10.1016/S0378-1119(03)00660-7, 14604790
    • Singer GA, Hickey DA. Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content. Gene 2003, 317(1-2):39-47. 10.1016/S0378-1119(03)00660-7, 14604790.
    • (2003) Gene , vol.317 , Issue.1-2 , pp. 39-47
    • Singer, G.A.1    Hickey, D.A.2
  • 9
    • 58549119536 scopus 로고    scopus 로고
    • Intracellular pathogenic bacteria and fungi--a case of convergent evolution?
    • Bliska JB, Casadevall A. Intracellular pathogenic bacteria and fungi--a case of convergent evolution?. Nat Rev Microbiol 2009, 7(2):165-171.
    • (2009) Nat Rev Microbiol , vol.7 , Issue.2 , pp. 165-171
    • Bliska, J.B.1    Casadevall, A.2
  • 10
    • 66749136930 scopus 로고    scopus 로고
    • Massive comparative genomic analysis reveals convergent evolution of specialized bacteria
    • 10.1186/1745-6150-4-13, 2688493, 19361336
    • Merhej V, Royer-Carenzi M, Pontarotti P, Raoult D. Massive comparative genomic analysis reveals convergent evolution of specialized bacteria. Biol Direct 2009, 4:13. 10.1186/1745-6150-4-13, 2688493, 19361336.
    • (2009) Biol Direct , vol.4 , pp. 13
    • Merhej, V.1    Royer-Carenzi, M.2    Pontarotti, P.3    Raoult, D.4
  • 13
    • 0027141828 scopus 로고
    • The marine prochlorophyte Prochlorococcus contributes significantly to phytoplankton biomass and primary production in the Sargasso Sea
    • Goericke R, Welschmeyer N. The marine prochlorophyte Prochlorococcus contributes significantly to phytoplankton biomass and primary production in the Sargasso Sea. Deep-sea research Part 1 Oceanographic research papers 1993, 40(11-12):2283-2294.
    • (1993) Deep-sea research Part 1 Oceanographic research papers , vol.40 , Issue.11-12 , pp. 2283-2294
    • Goericke, R.1    Welschmeyer, N.2
  • 14
    • 0000449745 scopus 로고    scopus 로고
    • Differential distribution and ecology of Prochlorococcus and Synechococcus in oceanic waters: a review
    • Partensky F, Blanchot J, Vaulot D. Differential distribution and ecology of Prochlorococcus and Synechococcus in oceanic waters: a review. Bulletin de l'Institut océanographique(Monaco) 1999, 457-475.
    • (1999) Bulletin de l'Institut océanographique(Monaco) , pp. 457-475
    • Partensky, F.1    Blanchot, J.2    Vaulot, D.3
  • 15
    • 0033009854 scopus 로고    scopus 로고
    • Prochlorococcus, a marine photosynthetic prokaryote of global significance
    • 98958, 10066832
    • Partensky F, Hess WR, Vaulot D. Prochlorococcus, a marine photosynthetic prokaryote of global significance. Microbiol Mol Biol Rev 1999, 63(1):106-127. 98958, 10066832.
    • (1999) Microbiol Mol Biol Rev , vol.63 , Issue.1 , pp. 106-127
    • Partensky, F.1    Hess, W.R.2    Vaulot, D.3
  • 16
    • 0032482462 scopus 로고    scopus 로고
    • Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes
    • 10.1038/30861, 9624000
    • Moore LR, Rocap G, Chisholm SW. Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes. Nature 1998, 393(6684):464-467. 10.1038/30861, 9624000.
    • (1998) Nature , vol.393 , Issue.6684 , pp. 464-467
    • Moore, L.R.1    Rocap, G.2    Chisholm, S.W.3
  • 17
    • 0031889272 scopus 로고    scopus 로고
    • Rapid diversification of marine picophytoplankton with dissimilar light-harvesting structures inferred from sequences of Prochlorococcus and Synechococcus (Cyanobacteria)
    • 10.1007/PL00006294, 9452521
    • Urbach E, Scanlan DJ, Distel DL, Waterbury JB, Chisholm SW. Rapid diversification of marine picophytoplankton with dissimilar light-harvesting structures inferred from sequences of Prochlorococcus and Synechococcus (Cyanobacteria). J Mol Evol 1998, 46(2):188-201. 10.1007/PL00006294, 9452521.
    • (1998) J Mol Evol , vol.46 , Issue.2 , pp. 188-201
    • Urbach, E.1    Scanlan, D.J.2    Distel, D.L.3    Waterbury, J.B.4    Chisholm, S.W.5
  • 18
    • 0033012306 scopus 로고    scopus 로고
    • Niche-partitioning of Prochlorococcus populations in a stratified water column in the eastern North Atlantic Ocean
    • 91382, 10347047
    • West NJ, Scanlan DJ. Niche-partitioning of Prochlorococcus populations in a stratified water column in the eastern North Atlantic Ocean. Appl Environ Microbiol 1999, 65(6):2585-2591. 91382, 10347047.
    • (1999) Appl Environ Microbiol , vol.65 , Issue.6 , pp. 2585-2591
    • West, N.J.1    Scanlan, D.J.2
  • 21
    • 34548491646 scopus 로고    scopus 로고
    • Code and context: Prochlorococcus as a model for cross-scale biology
    • 10.1016/j.tim.2007.07.001, 17693088
    • Coleman ML, Chisholm SW. Code and context: Prochlorococcus as a model for cross-scale biology. Trends Microbiol 2007, 15(9):398-407. 10.1016/j.tim.2007.07.001, 17693088.
    • (2007) Trends Microbiol , vol.15 , Issue.9 , pp. 398-407
    • Coleman, M.L.1    Chisholm, S.W.2
  • 22
    • 9644258967 scopus 로고    scopus 로고
    • Adaptive mechanisms of nitrogen and carbon assimilatory pathways in the marine cyanobacteria Prochlorococcus
    • 10.1016/j.resmic.2004.06.009, 15567272
    • Garcia-Fernandez JM, Diez J. Adaptive mechanisms of nitrogen and carbon assimilatory pathways in the marine cyanobacteria Prochlorococcus. Res Microbiol 2004, 155(10):795-802. 10.1016/j.resmic.2004.06.009, 15567272.
    • (2004) Res Microbiol , vol.155 , Issue.10 , pp. 795-802
    • Garcia-Fernandez, J.M.1    Diez, J.2
  • 23
    • 33747621641 scopus 로고    scopus 로고
    • Phosphate acquisition genes in Prochlorococcus ecotypes: evidence for genome-wide adaptation
    • 10.1073/pnas.0601301103, 1567916, 16895994
    • Martiny AC, Coleman ML, Chisholm SW. Phosphate acquisition genes in Prochlorococcus ecotypes: evidence for genome-wide adaptation. Proc Natl Acad Sci USA 2006, 103(33):12552-12557. 10.1073/pnas.0601301103, 1567916, 16895994.
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.33 , pp. 12552-12557
    • Martiny, A.C.1    Coleman, M.L.2    Chisholm, S.W.3
  • 24
    • 0041375471 scopus 로고    scopus 로고
    • Cyanophages infecting the oceanic cyanobacterium Prochlorococcus
    • 10.1038/nature01929, 12944965
    • Sullivan MB, Waterbury JB, Chisholm SW. Cyanophages infecting the oceanic cyanobacterium Prochlorococcus. Nature 2003, 424(6952):1047-1051. 10.1038/nature01929, 12944965.
    • (2003) Nature , vol.424 , Issue.6952 , pp. 1047-1051
    • Sullivan, M.B.1    Waterbury, J.B.2    Chisholm, S.W.3
  • 25
    • 28044436397 scopus 로고    scopus 로고
    • Accelerated evolution associated with genome reduction in a free-living prokaryote
    • 10.1186/gb-2005-6-2-r14, 551534, 15693943
    • Dufresne A, Garczarek L, Partensky F. Accelerated evolution associated with genome reduction in a free-living prokaryote. Genome Biol 2005, 6(2):R14. 10.1186/gb-2005-6-2-r14, 551534, 15693943.
    • (2005) Genome Biol , vol.6 , Issue.2
    • Dufresne, A.1    Garczarek, L.2    Partensky, F.3
  • 26
    • 0036899896 scopus 로고    scopus 로고
    • Evolution of microbial genomes: sequence acquisition and loss
    • Berg OG, Kurland CG. Evolution of microbial genomes: sequence acquisition and loss. Mol Biol Evol 2002, 19(12):2265-2276.
    • (2002) Mol Biol Evol , vol.19 , Issue.12 , pp. 2265-2276
    • Berg, O.G.1    Kurland, C.G.2
  • 27
    • 7344254101 scopus 로고    scopus 로고
    • Deleterious mutation accumulation in organelle genomes
    • 10.1023/A:1017022522486, 9720269
    • Lynch M, Blanchard JL. Deleterious mutation accumulation in organelle genomes. Genetica 1998, 102-103(1-6):29-39. 10.1023/A:1017022522486, 9720269.
    • (1998) Genetica , vol.102-103 , Issue.1-6 , pp. 29-39
    • Lynch, M.1    Blanchard, J.L.2
  • 28
    • 0036847064 scopus 로고    scopus 로고
    • Genome evolution in bacterial endosymbionts of insects
    • 10.1038/nrg931, 12415315
    • Wernegreen JJ. Genome evolution in bacterial endosymbionts of insects. Nat Rev Genet 2002, 3(11):850-861. 10.1038/nrg931, 12415315.
    • (2002) Nat Rev Genet , vol.3 , Issue.11 , pp. 850-861
    • Wernegreen, J.J.1
  • 29
    • 0032948901 scopus 로고    scopus 로고
    • Evidence for genetic drift in endosymbionts (Buchnera): analyses of protein-coding genes
    • Wernegreen JJ, Moran NA. Evidence for genetic drift in endosymbionts (Buchnera): analyses of protein-coding genes. Mol Biol Evol 1999, 16(1):83-97.
    • (1999) Mol Biol Evol , vol.16 , Issue.1 , pp. 83-97
    • Wernegreen, J.J.1    Moran, N.A.2
  • 30
    • 57749176901 scopus 로고    scopus 로고
    • Environmental sequence data from the Sargasso Sea reveal that the characteristics of genome reduction in Prochlorococcus are not a harbinger for an escalation in genetic drift
    • 10.1093/molbev/msn217, 18845550
    • Hu J, Blanchard JL. Environmental sequence data from the Sargasso Sea reveal that the characteristics of genome reduction in Prochlorococcus are not a harbinger for an escalation in genetic drift. Mol Biol Evol 2009, 26(1):5-13. 10.1093/molbev/msn217, 18845550.
    • (2009) Mol Biol Evol , vol.26 , Issue.1 , pp. 5-13
    • Hu, J.1    Blanchard, J.L.2
  • 31
    • 10344237544 scopus 로고    scopus 로고
    • Streamlined regulation and gene loss as adaptive mechanisms in Prochlorococcus for optimized nitrogen utilization in oligotrophic environments
    • 10.1128/MMBR.68.4.630-638.2004, 539009, 15590777
    • Garcia-Fernandez JM, de Marsac NT, Diez J. Streamlined regulation and gene loss as adaptive mechanisms in Prochlorococcus for optimized nitrogen utilization in oligotrophic environments. Microbiol Mol Biol Rev 2004, 68(4):630-638. 10.1128/MMBR.68.4.630-638.2004, 539009, 15590777.
    • (2004) Microbiol Mol Biol Rev , vol.68 , Issue.4 , pp. 630-638
    • Garcia-Fernandez, J.M.1    de Marsac, N.T.2    Diez, J.3
  • 33
    • 50249107979 scopus 로고    scopus 로고
    • Mutation rate and genome reduction in endosymbiotic and free-living bacteria
    • 10.1007/s10709-007-9226-6, 18046510
    • Marais GA, Calteau A, Tenaillon O. Mutation rate and genome reduction in endosymbiotic and free-living bacteria. Genetica 2008, 134(2):205-210. 10.1007/s10709-007-9226-6, 18046510.
    • (2008) Genetica , vol.134 , Issue.2 , pp. 205-210
    • Marais, G.A.1    Calteau, A.2    Tenaillon, O.3
  • 34
    • 0033118273 scopus 로고    scopus 로고
    • Proteome composition and codon usage in spirochaetes: species-specific and DNA strand-specific mutational biases
    • 10.1093/nar/27.7.1642, 148367, 10075995
    • Lafay B, Lloyd AT, McLean MJ, Devine KM, Sharp PM, Wolfe KH. Proteome composition and codon usage in spirochaetes: species-specific and DNA strand-specific mutational biases. Nucleic Acids Res 1999, 27(7):1642-1649. 10.1093/nar/27.7.1642, 148367, 10075995.
    • (1999) Nucleic Acids Res , vol.27 , Issue.7 , pp. 1642-1649
    • Lafay, B.1    Lloyd, A.T.2    McLean, M.J.3    Devine, K.M.4    Sharp, P.M.5    Wolfe, K.H.6
  • 35
    • 0032169578 scopus 로고    scopus 로고
    • Replicational and transcriptional selection on codon usage in Borrelia burgdorferi
    • 10.1073/pnas.95.18.10698, 27958, 9724767
    • McInerney JO. Replicational and transcriptional selection on codon usage in Borrelia burgdorferi. Proc Natl Acad Sci USA 1998, 95(18):10698-10703. 10.1073/pnas.95.18.10698, 27958, 9724767.
    • (1998) Proc Natl Acad Sci USA , vol.95 , Issue.18 , pp. 10698-10703
    • McInerney, J.O.1
  • 36
    • 0035049521 scopus 로고    scopus 로고
    • Genome-scale compositional comparisons in eukaryotes
    • 10.1101/gr.163101, 311039, 11282969
    • Gentles AJ, Karlin S. Genome-scale compositional comparisons in eukaryotes. Genome Res 2001, 11(4):540-546. 10.1101/gr.163101, 311039, 11282969.
    • (2001) Genome Res , vol.11 , Issue.4 , pp. 540-546
    • Gentles, A.J.1    Karlin, S.2
  • 37
    • 0026684849 scopus 로고
    • Evidence that MutY and MutM combine to prevent mutations by an oxidatively damaged form of guanine in DNA
    • 10.1073/pnas.89.15.7022, 49637, 1495996
    • Michaels ML, Cruz C, Grollman AP, Miller JH. Evidence that MutY and MutM combine to prevent mutations by an oxidatively damaged form of guanine in DNA. Proc Natl Acad Sci USA 1992, 89(15):7022-7025. 10.1073/pnas.89.15.7022, 49637, 1495996.
    • (1992) Proc Natl Acad Sci USA , vol.89 , Issue.15 , pp. 7022-7025
    • Michaels, M.L.1    Cruz, C.2    Grollman, A.P.3    Miller, J.H.4
  • 38
    • 0032972974 scopus 로고    scopus 로고
    • Escherichia coli mutator genes
    • 10.1016/S0966-842X(98)01424-3, 10068995
    • Horst JP, Wu TH, Marinus MG. Escherichia coli mutator genes. Trends Microbiol 1999, 7(1):29-36. 10.1016/S0966-842X(98)01424-3, 10068995.
    • (1999) Trends Microbiol , vol.7 , Issue.1 , pp. 29-36
    • Horst, J.P.1    Wu, T.H.2    Marinus, M.G.3
  • 40
    • 17844387345 scopus 로고    scopus 로고
    • Comparative genome analyses of Arabidopsis spp.: inferring chromosomal rearrangement events in the evolutionary history of A. thaliana
    • 10.1101/gr.3436305, 1074365, 15805492
    • Yogeeswaran K, Frary A, York TL, Amenta A, Lesser AH, Nasrallah JB, Tanksley SD, Nasrallah ME. Comparative genome analyses of Arabidopsis spp.: inferring chromosomal rearrangement events in the evolutionary history of A. thaliana. Genome Res 2005, 15(4):505-515. 10.1101/gr.3436305, 1074365, 15805492.
    • (2005) Genome Res , vol.15 , Issue.4 , pp. 505-515
    • Yogeeswaran, K.1    Frary, A.2    York, T.L.3    Amenta, A.4    Lesser, A.H.5    Nasrallah, J.B.6    Tanksley, S.D.7    Nasrallah, M.E.8
  • 41
    • 19544374490 scopus 로고    scopus 로고
    • Genome rearrangement distances and gene order phylogeny in gamma-Proteobacteria
    • 10.1093/molbev/msi134, 15772379
    • Belda E, Moya A, Silva FJ. Genome rearrangement distances and gene order phylogeny in gamma-Proteobacteria. Mol Biol Evol 2005, 22(6):1456-1467. 10.1093/molbev/msi134, 15772379.
    • (2005) Mol Biol Evol , vol.22 , Issue.6 , pp. 1456-1467
    • Belda, E.1    Moya, A.2    Silva, F.J.3
  • 42
    • 0035479142 scopus 로고    scopus 로고
    • Deletional bias and the evolution of bacterial genomes
    • 10.1016/S0168-9525(01)02447-7, 11585665
    • Mira A, Ochman H, Moran NA. Deletional bias and the evolution of bacterial genomes. Trends Genet 2001, 17(10):589-596. 10.1016/S0168-9525(01)02447-7, 11585665.
    • (2001) Trends Genet , vol.17 , Issue.10 , pp. 589-596
    • Mira, A.1    Ochman, H.2    Moran, N.A.3
  • 43
    • 50249155987 scopus 로고    scopus 로고
    • Association between the availability of environmental resources and the atomic composition of organismal proteomes: evidence from Prochlorococcus strains living at different depths
    • 10.1016/j.bbrc.2008.08.011, 18706891
    • Lv J, Li N, Niu DK. Association between the availability of environmental resources and the atomic composition of organismal proteomes: evidence from Prochlorococcus strains living at different depths. Biochem Biophys Res Commun 2008, 375(2):241-246. 10.1016/j.bbrc.2008.08.011, 18706891.
    • (2008) Biochem Biophys Res Commun , vol.375 , Issue.2 , pp. 241-246
    • Lv, J.1    Li, N.2    Niu, D.K.3
  • 44
    • 0034595515 scopus 로고    scopus 로고
    • Protein packing: dependence on protein size, secondary structure and amino acid composition
    • 10.1006/jmbi.2000.3750, 10860754
    • Fleming PJ, Richards FM. Protein packing: dependence on protein size, secondary structure and amino acid composition. J Mol Biol 2000, 299(2):487-498. 10.1006/jmbi.2000.3750, 10860754.
    • (2000) J Mol Biol , vol.299 , Issue.2 , pp. 487-498
    • Fleming, P.J.1    Richards, F.M.2
  • 45
    • 3142748120 scopus 로고    scopus 로고
    • Where does bacterial replication start? Rules for predicting the oriC region
    • 10.1093/nar/gkh699, 506792, 15258248
    • Mackiewicz P, Zakrzewska-Czerwinska J, Zawilak A, Dudek MR, Cebrat S. Where does bacterial replication start? Rules for predicting the oriC region. Nucleic Acids Res 2004, 32(13):3781-3791. 10.1093/nar/gkh699, 506792, 15258248.
    • (2004) Nucleic Acids Res , vol.32 , Issue.13 , pp. 3781-3791
    • Mackiewicz, P.1    Zakrzewska-Czerwinska, J.2    Zawilak, A.3    Dudek, M.R.4    Cebrat, S.5
  • 46
    • 0009183442 scopus 로고    scopus 로고
    • Analysis of codon usage
    • University of Nottingham, Department of Genetics
    • Penden J. Analysis of codon usage. PhD thesis 1997, University of Nottingham, Department of Genetics.
    • (1997) PhD thesis
    • Penden, J.1
  • 47
    • 0029060923 scopus 로고
    • Dinucleotide relative abundance extremes: a genomic signature
    • 10.1016/S0168-9525(00)89076-9, 7482779
    • Karlin S, Burge C. Dinucleotide relative abundance extremes: a genomic signature. Trends Genet 1995, 11(7):283-290. 10.1016/S0168-9525(00)89076-9, 7482779.
    • (1995) Trends Genet , vol.11 , Issue.7 , pp. 283-290
    • Karlin, S.1    Burge, C.2
  • 48
    • 1842332701 scopus 로고    scopus 로고
    • Compositional biases of bacterial genomes and evolutionary implications
    • 179198, 9190805
    • Karlin S, Mrazek J, Campbell AM. Compositional biases of bacterial genomes and evolutionary implications. J Bacteriol 1997, 179(12):3899-3913. 179198, 9190805.
    • (1997) J Bacteriol , vol.179 , Issue.12 , pp. 3899-3913
    • Karlin, S.1    Mrazek, J.2    Campbell, A.M.3
  • 49
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • 10.1093/molbev/msm092, 17488738
    • Tamura K, Dudley J, Nei M, Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 2007, 24(8):1596-1599. 10.1093/molbev/msm092, 17488738.
    • (2007) Mol Biol Evol , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 50
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei M, Gojobori T. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 1986, 3(5):418-426.
    • (1986) Mol Biol Evol , vol.3 , Issue.5 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 51
    • 0004036449 scopus 로고    scopus 로고
    • Molecular evolution and phylogenetics
    • Oxford University Press, USA
    • Nei M, Kumar S. Molecular evolution and phylogenetics. 2000, Oxford University Press, USA.
    • (2000)
    • Nei, M.1    Kumar, S.2
  • 52
    • 0023650543 scopus 로고
    • The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications
    • 10.1093/nar/15.3.1281, 340524, 3547335
    • Sharp PM, Li WH. The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res 1987, 15(3):1281-1295. 10.1093/nar/15.3.1281, 340524, 3547335.
    • (1987) Nucleic Acids Res , vol.15 , Issue.3 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.H.2
  • 53
    • 0020475449 scopus 로고
    • A simple method for displaying the hydropathic character of a protein
    • 10.1016/0022-2836(82)90515-0, 7108955
    • Kyte J, Doolittle RF. A simple method for displaying the hydropathic character of a protein. J Mol Biol 1982, 157(1):105-132. 10.1016/0022-2836(82)90515-0, 7108955.
    • (1982) J Mol Biol , vol.157 , Issue.1 , pp. 105-132
    • Kyte, J.1    Doolittle, R.F.2
  • 54
    • 0025612425 scopus 로고
    • Correlation between stability of a protein and its dipeptide composition: a novel approach for predicting in vivo stability of a protein from its primary sequence
    • 10.1093/protein/4.2.155, 2075190
    • Guruprasad K, Reddy BV, Pandit MW. Correlation between stability of a protein and its dipeptide composition: a novel approach for predicting in vivo stability of a protein from its primary sequence. Protein Eng 1990, 4(2):155-161. 10.1093/protein/4.2.155, 2075190.
    • (1990) Protein Eng , vol.4 , Issue.2 , pp. 155-161
    • Guruprasad, K.1    Reddy, B.V.2    Pandit, M.W.3
  • 55
    • 27844519588 scopus 로고    scopus 로고
    • Expasy Proteomics Server
    • Expasy Proteomics Server. , http://expasy.org
  • 56
    • 0030931336 scopus 로고    scopus 로고
    • Seventy-five percent accuracy in protein secondary structure prediction
    • 10.1002/(SICI)1097-0134(199703)27:3<329::AID-PROT1>3.0.CO;2-8, 9094735
    • Frishman D, Argos P. Seventy-five percent accuracy in protein secondary structure prediction. Proteins 1997, 27(3):329-335. 10.1002/(SICI)1097-0134(199703)27:3<329::AID-PROT1>3.0.CO;2-8, 9094735.
    • (1997) Proteins , vol.27 , Issue.3 , pp. 329-335
    • Frishman, D.1    Argos, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.