-
1
-
-
33644961434
-
Measurement of Prochlorococcus ecotypes using real-time polymerase chain reaction reveals different abundances of genotypes with similar light physiologies
-
Ahlgren NA, Rocap G, Chisholm SW. 2006. Measurement of Prochlorococcus ecotypes using real-time polymerase chain reaction reveals different abundances of genotypes with similar light physiologies. Environ Microbiol. 8:441-454.
-
(2006)
Environ Microbiol
, vol.8
, pp. 441-454
-
-
Ahlgren, N.A.1
Rocap, G.2
Chisholm, S.W.3
-
2
-
-
0032127258
-
Reductive evolution of resident genomes
-
Andersson SG, Kurland CG. 1998. Reductive evolution of resident genomes. Trends Microbiol. 6:263-268.
-
(1998)
Trends Microbiol
, vol.6
, pp. 263-268
-
-
Andersson, S.G.1
Kurland, C.G.2
-
3
-
-
33746296470
-
Large-scale analyses of synonymous substitution rates can be sensitive to assumptions about the process of mutation
-
Aris-Brosou S, Bielawski JP. 2006. Large-scale analyses of synonymous substitution rates can be sensitive to assumptions about the process of mutation. Gene. 378:58-64.
-
(2006)
Gene
, vol.378
, pp. 58-64
-
-
Aris-Brosou, S.1
Bielawski, J.P.2
-
4
-
-
0034237205
-
Organellar genes: Why do they end up in the nucleus?
-
Blanchard JL, Lynch M. 2000. Organellar genes: why do they end up in the nucleus? Trends Genet. 16:315-320.
-
(2000)
Trends Genet
, vol.16
, pp. 315-320
-
-
Blanchard, J.L.1
Lynch, M.2
-
5
-
-
0024265562
-
A novel free living Prochlorococcus occurs at high concentration in the oceanic euphotic zone
-
Chisholm SW, Olson RJ, Zettler ER, Waterbury J, Goericke R, Welschmeyer NA. 1988. A novel free living Prochlorococcus occurs at high concentration in the oceanic euphotic zone. Nature. 334:340-343.
-
(1988)
Nature
, vol.334
, pp. 340-343
-
-
Chisholm, S.W.1
Olson, R.J.2
Zettler, E.R.3
Waterbury, J.4
Goericke, R.5
Welschmeyer, N.A.6
-
6
-
-
34548491646
-
Code and context: Prochlorococcus as a model for cross-scale biology
-
Coleman ML, Chisholm SW. 2007. Code and context: Prochlorococcus as a model for cross-scale biology. Trends Microbiol. 15:398-407.
-
(2007)
Trends Microbiol
, vol.15
, pp. 398-407
-
-
Coleman, M.L.1
Chisholm, S.W.2
-
7
-
-
19144362371
-
Microbial community genomics in the ocean
-
DeLong EF. 2005. Microbial community genomics in the ocean. Nat Rev Microbiol. 3:459-469.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 459-469
-
-
DeLong, E.F.1
-
8
-
-
28044436397
-
Accelerated evolution associated with genome reduction in a free-living prokaryote
-
Dufresne A, Garczarek L, Partensky F. 2005. Accelerated evolution associated with genome reduction in a free-living prokaryote. Genome Biol. 6:R14.
-
(2005)
Genome Biol
, vol.6
-
-
Dufresne, A.1
Garczarek, L.2
Partensky, F.3
-
9
-
-
0041386044
-
-
Dufresne A, Salanoubat M, Partensky F, et al. (21 co-authors). 2003. Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome. Proc Natl Acad Sci USA. 100:10020-10025.
-
Dufresne A, Salanoubat M, Partensky F, et al. (21 co-authors). 2003. Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome. Proc Natl Acad Sci USA. 100:10020-10025.
-
-
-
-
10
-
-
57749192358
-
-
Felsenstein J. 1989. PHYLIP, phylogeny inference package version 3.2, Cladistics. 5:164-166
-
Felsenstein J. 1989. PHYLIP - phylogeny inference package (version 3.2). Cladistics. 5:164-166.
-
-
-
-
11
-
-
10344237544
-
Streamlined regulation and gene loss as adaptive mechanisms in Prochlorococcus for optimized nitrogen utilization in oligotrophic environments
-
Garcia-Fernandez JM, de Marsac NT, Diez J. 2004. Streamlined regulation and gene loss as adaptive mechanisms in Prochlorococcus for optimized nitrogen utilization in oligotrophic environments. Microbiol Mol Biol Rev. 68:630-638.
-
(2004)
Microbiol Mol Biol Rev
, vol.68
, pp. 630-638
-
-
Garcia-Fernandez, J.M.1
de Marsac, N.T.2
Diez, J.3
-
12
-
-
0022376704
-
Dating of the humanape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa M, Kishino H, Yano T. 1985. Dating of the humanape splitting by a molecular clock of mitochondrial DNA. J Mol Evol. 22:160-174.
-
(1985)
J Mol Evol
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
13
-
-
0035706612
-
The photosynthetic apparatus of Prochlorococcus: Insights through comparative genomics
-
Hess WR, Rocap G, Ting CS, Larimer FW, Stilwagen S, Lamerdin J, Chisholm SW. 2001. The photosynthetic apparatus of Prochlorococcus: insights through comparative genomics. Photosiynth Res. 70:53-71.
-
(2001)
Photosiynth Res
, vol.70
, pp. 53-71
-
-
Hess, W.R.1
Rocap, G.2
Ting, C.S.3
Larimer, F.W.4
Stilwagen, S.5
Lamerdin, J.6
Chisholm, S.W.7
-
14
-
-
33645216333
-
Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients
-
Johnson ZI, Zinser ER, Coe A, McNulty NP, Woodward EM, Chisholm SW. 2006. Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients. Science. 311:1737-1740.
-
(2006)
Science
, vol.311
, pp. 1737-1740
-
-
Johnson, Z.I.1
Zinser, E.R.2
Coe, A.3
McNulty, N.P.4
Woodward, E.M.5
Chisholm, S.W.6
-
15
-
-
0036203448
-
Multiple sequence alignment using partial order graphs
-
Lee C, Grasso C, Sharlow MF. 2002. Multiple sequence alignment using partial order graphs. Bioinformatics. 18: 452-464.
-
(2002)
Bioinformatics
, vol.18
, pp. 452-464
-
-
Lee, C.1
Grasso, C.2
Sharlow, M.F.3
-
16
-
-
7344254101
-
Deleterious mutation accumulation in organelle genomes
-
Lynch M, Blanchard JL. 1998. Deleterious mutation accumulation in organelle genomes. Genetica. 102-103:29-39.
-
(1998)
Genetica
, vol.102-103
, pp. 29-39
-
-
Lynch, M.1
Blanchard, J.L.2
-
18
-
-
33747621641
-
Phosphate acquisition genes in Prochlorococcus ecotypes: Evidence for genome-wide adaptation
-
Martiny AC, Coleman ML, Chisholm SW. 2006. Phosphate acquisition genes in Prochlorococcus ecotypes: evidence for genome-wide adaptation. Proc Natl Acad Sci USA. 103: 12552-12557.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 12552-12557
-
-
Martiny, A.C.1
Coleman, M.L.2
Chisholm, S.W.3
-
19
-
-
0029109040
-
Comparative physiology of Synechococcus and Prochlorococcus: Influence of light and temperature on growth, pigments, fluorescence and absorptive properties
-
Moore LR, Goericke R, Chisholm SW. 1995. Comparative physiology of Synechococcus and Prochlorococcus: influence of light and temperature on growth, pigments, fluorescence and absorptive properties. Mar Ecol Prog Ser. 116:259-275.
-
(1995)
Mar Ecol Prog Ser
, vol.116
, pp. 259-275
-
-
Moore, L.R.1
Goericke, R.2
Chisholm, S.W.3
-
20
-
-
0033009854
-
Prochlorococcus, a marine photosynthetic prokaryote of global significance
-
Partensky F, Hess WR, Vaulot D. 1999. Prochlorococcus, a marine photosynthetic prokaryote of global significance. Microbiol Mol Biol Rev. 63:106-127.
-
(1999)
Microbiol Mol Biol Rev
, vol.63
, pp. 106-127
-
-
Partensky, F.1
Hess, W.R.2
Vaulot, D.3
-
21
-
-
0042878464
-
-
Rocap G, Larimer FW, Lamerdin J, et al. (24 co-authors). 2003. Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature. 424:1042-1047.
-
Rocap G, Larimer FW, Lamerdin J, et al. (24 co-authors). 2003. Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature. 424:1042-1047.
-
-
-
-
22
-
-
33644630612
-
Comparisons of dN/dS are time dependent for closely related bacterial genomes
-
Rocha EP, Smith JM, Hurst LD, Holden MT, Cooper JE, Smith NH, Feil EJ. 2006. Comparisons of dN/dS are time dependent for closely related bacterial genomes. J Theor Biol. 239:226-235.
-
(2006)
J Theor Biol
, vol.239
, pp. 226-235
-
-
Rocha, E.P.1
Smith, J.M.2
Hurst, L.D.3
Holden, M.T.4
Cooper, J.E.5
Smith, N.H.6
Feil, E.J.7
-
23
-
-
11144354360
-
-
Venter JC, Remington K, Heidelberg JF, et al. (23 co-authors). 2004. Environmental genome shotgun sequencing of the Sargasso Sea. Science. 304:66-74.
-
Venter JC, Remington K, Heidelberg JF, et al. (23 co-authors). 2004. Environmental genome shotgun sequencing of the Sargasso Sea. Science. 304:66-74.
-
-
-
-
24
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci. 13: 555-556.
-
(1997)
Comput Appl Biosci
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
25
-
-
0033979433
-
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
-
Yang Z, Nielsen R. 2000. Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol Biol Evol. 17:32-43.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 32-43
-
-
Yang, Z.1
Nielsen, R.2
|