메뉴 건너뛰기




Volumn 26, Issue 1, 2009, Pages 5-13

Environmental sequence data from the sargasso sea reveal that the characteristics of genome reduction in prochlorococcus are not a harbinger for an escalation in genetic drift (Mol. Biol. Evol. (2009) 26 (5-13) DOI:10.1093/molbev/msn217);Environmental sequence data from the Sargasso Sea reveal that the characteristics of genome reduction in Prochlorococcus are not a harbinger for an escalation in genetic drift

Author keywords

Cyanobacteria; Endosymbionts; Genetic drift; Genomics; Metagenomics; Prochlorococcus

Indexed keywords

AMINO ACID; DNA;

EID: 57749176901     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msn299     Document Type: Erratum
Times cited : (18)

References (25)
  • 1
    • 33644961434 scopus 로고    scopus 로고
    • Measurement of Prochlorococcus ecotypes using real-time polymerase chain reaction reveals different abundances of genotypes with similar light physiologies
    • Ahlgren NA, Rocap G, Chisholm SW. 2006. Measurement of Prochlorococcus ecotypes using real-time polymerase chain reaction reveals different abundances of genotypes with similar light physiologies. Environ Microbiol. 8:441-454.
    • (2006) Environ Microbiol , vol.8 , pp. 441-454
    • Ahlgren, N.A.1    Rocap, G.2    Chisholm, S.W.3
  • 2
    • 0032127258 scopus 로고    scopus 로고
    • Reductive evolution of resident genomes
    • Andersson SG, Kurland CG. 1998. Reductive evolution of resident genomes. Trends Microbiol. 6:263-268.
    • (1998) Trends Microbiol , vol.6 , pp. 263-268
    • Andersson, S.G.1    Kurland, C.G.2
  • 3
    • 33746296470 scopus 로고    scopus 로고
    • Large-scale analyses of synonymous substitution rates can be sensitive to assumptions about the process of mutation
    • Aris-Brosou S, Bielawski JP. 2006. Large-scale analyses of synonymous substitution rates can be sensitive to assumptions about the process of mutation. Gene. 378:58-64.
    • (2006) Gene , vol.378 , pp. 58-64
    • Aris-Brosou, S.1    Bielawski, J.P.2
  • 4
    • 0034237205 scopus 로고    scopus 로고
    • Organellar genes: Why do they end up in the nucleus?
    • Blanchard JL, Lynch M. 2000. Organellar genes: why do they end up in the nucleus? Trends Genet. 16:315-320.
    • (2000) Trends Genet , vol.16 , pp. 315-320
    • Blanchard, J.L.1    Lynch, M.2
  • 6
    • 34548491646 scopus 로고    scopus 로고
    • Code and context: Prochlorococcus as a model for cross-scale biology
    • Coleman ML, Chisholm SW. 2007. Code and context: Prochlorococcus as a model for cross-scale biology. Trends Microbiol. 15:398-407.
    • (2007) Trends Microbiol , vol.15 , pp. 398-407
    • Coleman, M.L.1    Chisholm, S.W.2
  • 7
    • 19144362371 scopus 로고    scopus 로고
    • Microbial community genomics in the ocean
    • DeLong EF. 2005. Microbial community genomics in the ocean. Nat Rev Microbiol. 3:459-469.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 459-469
    • DeLong, E.F.1
  • 8
    • 28044436397 scopus 로고    scopus 로고
    • Accelerated evolution associated with genome reduction in a free-living prokaryote
    • Dufresne A, Garczarek L, Partensky F. 2005. Accelerated evolution associated with genome reduction in a free-living prokaryote. Genome Biol. 6:R14.
    • (2005) Genome Biol , vol.6
    • Dufresne, A.1    Garczarek, L.2    Partensky, F.3
  • 9
    • 0041386044 scopus 로고    scopus 로고
    • Dufresne A, Salanoubat M, Partensky F, et al. (21 co-authors). 2003. Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome. Proc Natl Acad Sci USA. 100:10020-10025.
    • Dufresne A, Salanoubat M, Partensky F, et al. (21 co-authors). 2003. Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome. Proc Natl Acad Sci USA. 100:10020-10025.
  • 10
    • 57749192358 scopus 로고    scopus 로고
    • Felsenstein J. 1989. PHYLIP, phylogeny inference package version 3.2, Cladistics. 5:164-166
    • Felsenstein J. 1989. PHYLIP - phylogeny inference package (version 3.2). Cladistics. 5:164-166.
  • 11
    • 10344237544 scopus 로고    scopus 로고
    • Streamlined regulation and gene loss as adaptive mechanisms in Prochlorococcus for optimized nitrogen utilization in oligotrophic environments
    • Garcia-Fernandez JM, de Marsac NT, Diez J. 2004. Streamlined regulation and gene loss as adaptive mechanisms in Prochlorococcus for optimized nitrogen utilization in oligotrophic environments. Microbiol Mol Biol Rev. 68:630-638.
    • (2004) Microbiol Mol Biol Rev , vol.68 , pp. 630-638
    • Garcia-Fernandez, J.M.1    de Marsac, N.T.2    Diez, J.3
  • 12
    • 0022376704 scopus 로고
    • Dating of the humanape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa M, Kishino H, Yano T. 1985. Dating of the humanape splitting by a molecular clock of mitochondrial DNA. J Mol Evol. 22:160-174.
    • (1985) J Mol Evol , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 14
    • 33645216333 scopus 로고    scopus 로고
    • Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients
    • Johnson ZI, Zinser ER, Coe A, McNulty NP, Woodward EM, Chisholm SW. 2006. Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients. Science. 311:1737-1740.
    • (2006) Science , vol.311 , pp. 1737-1740
    • Johnson, Z.I.1    Zinser, E.R.2    Coe, A.3    McNulty, N.P.4    Woodward, E.M.5    Chisholm, S.W.6
  • 15
    • 0036203448 scopus 로고    scopus 로고
    • Multiple sequence alignment using partial order graphs
    • Lee C, Grasso C, Sharlow MF. 2002. Multiple sequence alignment using partial order graphs. Bioinformatics. 18: 452-464.
    • (2002) Bioinformatics , vol.18 , pp. 452-464
    • Lee, C.1    Grasso, C.2    Sharlow, M.F.3
  • 16
    • 7344254101 scopus 로고    scopus 로고
    • Deleterious mutation accumulation in organelle genomes
    • Lynch M, Blanchard JL. 1998. Deleterious mutation accumulation in organelle genomes. Genetica. 102-103:29-39.
    • (1998) Genetica , vol.102-103 , pp. 29-39
    • Lynch, M.1    Blanchard, J.L.2
  • 18
    • 33747621641 scopus 로고    scopus 로고
    • Phosphate acquisition genes in Prochlorococcus ecotypes: Evidence for genome-wide adaptation
    • Martiny AC, Coleman ML, Chisholm SW. 2006. Phosphate acquisition genes in Prochlorococcus ecotypes: evidence for genome-wide adaptation. Proc Natl Acad Sci USA. 103: 12552-12557.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 12552-12557
    • Martiny, A.C.1    Coleman, M.L.2    Chisholm, S.W.3
  • 19
    • 0029109040 scopus 로고
    • Comparative physiology of Synechococcus and Prochlorococcus: Influence of light and temperature on growth, pigments, fluorescence and absorptive properties
    • Moore LR, Goericke R, Chisholm SW. 1995. Comparative physiology of Synechococcus and Prochlorococcus: influence of light and temperature on growth, pigments, fluorescence and absorptive properties. Mar Ecol Prog Ser. 116:259-275.
    • (1995) Mar Ecol Prog Ser , vol.116 , pp. 259-275
    • Moore, L.R.1    Goericke, R.2    Chisholm, S.W.3
  • 20
    • 0033009854 scopus 로고    scopus 로고
    • Prochlorococcus, a marine photosynthetic prokaryote of global significance
    • Partensky F, Hess WR, Vaulot D. 1999. Prochlorococcus, a marine photosynthetic prokaryote of global significance. Microbiol Mol Biol Rev. 63:106-127.
    • (1999) Microbiol Mol Biol Rev , vol.63 , pp. 106-127
    • Partensky, F.1    Hess, W.R.2    Vaulot, D.3
  • 21
    • 0042878464 scopus 로고    scopus 로고
    • Rocap G, Larimer FW, Lamerdin J, et al. (24 co-authors). 2003. Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature. 424:1042-1047.
    • Rocap G, Larimer FW, Lamerdin J, et al. (24 co-authors). 2003. Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature. 424:1042-1047.
  • 23
    • 11144354360 scopus 로고    scopus 로고
    • Venter JC, Remington K, Heidelberg JF, et al. (23 co-authors). 2004. Environmental genome shotgun sequencing of the Sargasso Sea. Science. 304:66-74.
    • Venter JC, Remington K, Heidelberg JF, et al. (23 co-authors). 2004. Environmental genome shotgun sequencing of the Sargasso Sea. Science. 304:66-74.
  • 24
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci. 13: 555-556.
    • (1997) Comput Appl Biosci , vol.13 , pp. 555-556
    • Yang, Z.1
  • 25
    • 0033979433 scopus 로고    scopus 로고
    • Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
    • Yang Z, Nielsen R. 2000. Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol Biol Evol. 17:32-43.
    • (2000) Mol Biol Evol , vol.17 , pp. 32-43
    • Yang, Z.1    Nielsen, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.