-
1
-
-
0242300069
-
The genome of Nanoarchaeum equitans: Insights into early archaeal evolution and derived parasitism
-
Waters E, Hohn MJ, Ahel I, Graham DE, Adams MD, Barnstead M, Beeson KY, Bibbs L, Bolanos R, Keller M, et al.: The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism. Proc Natl Acad Sci USA 2003, 100:12984-12988.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 12984-12988
-
-
Waters, E.1
Hohn, M.J.2
Ahel, I.3
Graham, D.E.4
Adams, M.D.5
Barnstead, M.6
Beeson, K.Y.7
Bibbs, L.8
Bolanos, R.9
Keller, M.10
-
2
-
-
0037007636
-
A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont
-
Huber H, Hohn MJ, Rachel R, Fuchs T, Wimmer VC, Stetter KO: A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont. Nature 2002, 417:63-67.
-
(2002)
Nature
, vol.417
, pp. 63-67
-
-
Huber, H.1
Hohn, M.J.2
Rachel, R.3
Fuchs, T.4
Wimmer, V.C.5
Stetter, K.O.6
-
3
-
-
0029866448
-
Accelerated evolution and Muller's rachet in endosymbiotic bacteria
-
Moran NA: Accelerated evolution and Muller's rachet in endosymbiotic bacteria. Proc Natl Acad Sci USA 1996, 93:2873-2878.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 2873-2878
-
-
Moran, N.A.1
-
4
-
-
0034255952
-
Lifestyle evolution in symbiotic bacteria: Insights from genomics
-
Moran NA, Wernegreen JJ: Lifestyle evolution in symbiotic bacteria: insights from genomics. Trends Ecol Evol (Amst) 2000, 15:321-326.
-
(2000)
Trends Ecol Evol (Amst)
, vol.15
, pp. 321-326
-
-
Moran, N.A.1
Wernegreen, J.J.2
-
5
-
-
0023956574
-
Directional mutation pressure and transfer RNA in choice of the third nucleotide of synonymous two-codon sets
-
Osawa S, Ohama T, Yamao F, Muto A, Jukes TH, Ozeki H, Umesono K: Directional mutation pressure and transfer RNA in choice of the third nucleotide of synonymous two-codon sets. Proc Natl Acad Sci USA 1988, 85:1124-1128.
-
(1988)
Proc Natl Acad Sci USA
, vol.85
, pp. 1124-1128
-
-
Osawa, S.1
Ohama, T.2
Yamao, F.3
Muto, A.4
Jukes, T.H.5
Ozeki, H.6
Umesono, K.7
-
6
-
-
8744310123
-
Codon usage bias from tRNA's point of view: Redundancy, specialization, and efficient decoding for translation optimization
-
Rocha EP: Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization. Genome Res 2004, 14:2279-2286.
-
(2004)
Genome Res
, vol.14
, pp. 2279-2286
-
-
Rocha, E.P.1
-
7
-
-
14544277543
-
Variation in the strength of selected codon usage bias among bacteria
-
Sharp PM, Bailes E, Grocock RJ, Peden JF, Sockett RE: Variation in the strength of selected codon usage bias among bacteria. Nucleic Acids Res 2005, 33:1141-1153.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1141-1153
-
-
Sharp, P.M.1
Bailes, E.2
Grocock, R.J.3
Peden, J.F.4
Sockett, R.E.5
-
8
-
-
0041422250
-
The genome sequence of Blochmannia floridanus: Comparative analysis of reduced genomes
-
Gil R, Silva FJ, Zientz E, Delmotte F, Gonzalez-Candelas F, Latorre A, Rausell C, Kamerbeek J, Gadau J, Holldobler B, et al.: The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes. Proc Natl Acad Sci USA 2003, 100:9388-9393.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 9388-9393
-
-
Gil, R.1
Silva, F.J.2
Zientz, E.3
Delmotte, F.4
Gonzalez-Candelas, F.5
Latorre, A.6
Rausell, C.7
Kamerbeek, J.8
Gadau, J.9
Holldobler, B.10
-
9
-
-
0032169578
-
Replicational and transcriptional selection on codon usage in Borrelia burgdorferi
-
McInerney JO: Replicational and transcriptional selection on codon usage in Borrelia burgdorferi. Proc Natl Acad Sci USA 1998, 95:10698-10703.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 10698-10703
-
-
McInerney, J.O.1
-
10
-
-
0347135951
-
Mutational and selective pressures on codon and amino acid usage in Buchnera, endosymbiotic bacteria of aphids
-
Rispe C, Delmotte F, van Ham RC, Moya A: Mutational and selective pressures on codon and amino acid usage in Buchnera, endosymbiotic bacteria of aphids. Genome Res 2004, 14:44-53.
-
(2004)
Genome Res
, vol.14
, pp. 44-53
-
-
Rispe, C.1
Delmotte, F.2
van Ham, R.C.3
Moya, A.4
-
11
-
-
0034086295
-
Absence of translationally selected synonymous codon usage bias in Helicobacter pylori
-
Lafay B, Atherton JC, Sharp PM: Absence of translationally selected synonymous codon usage bias in Helicobacter pylori. Microbiology 2000, 146(Pt 4):851-860.
-
(2000)
Microbiology
, vol.146
, Issue.PART 4
, pp. 851-860
-
-
Lafay, B.1
Atherton, J.C.2
Sharp, P.M.3
-
12
-
-
24944495338
-
Codon and amino Acid usage in two major human pathogens of genus Bartonella - Optimization between replicational-transcriptional selection, translational control and cost minimization
-
Das S, Paul S, Chatterjee S, Dutta C: Codon and amino Acid usage in two major human pathogens of genus Bartonella - optimization between replicational-transcriptional selection, translational control and cost minimization. DNA Res 2005, 12:91-102.
-
(2005)
DNA Res
, vol.12
, pp. 91-102
-
-
Das, S.1
Paul, S.2
Chatterjee, S.3
Dutta, C.4
-
13
-
-
0141814791
-
Gene expression level influences amino acid usage, but not codon usage, in the tsetse fly endosymbiont Wigglesworthia
-
Herbeck JT, Wall DP, Wernegreen JJ: Gene expression level influences amino acid usage, but not codon usage, in the tsetse fly endosymbiont Wigglesworthia. Microbiology 2003, 149:2585-2596.
-
(2003)
Microbiology
, vol.149
, pp. 2585-2596
-
-
Herbeck, J.T.1
Wall, D.P.2
Wernegreen, J.J.3
-
14
-
-
33745662661
-
Evolutionary constraints on codon and amino acid usage in two strains of human pathogenic actinobacteria Tropheryma whipplei
-
Das S, Paul S, Dutta C: Evolutionary constraints on codon and amino acid usage in two strains of human pathogenic actinobacteria Tropheryma whipplei. J Mol Evol 2006, 62:645-658.
-
(2006)
J Mol Evol
, vol.62
, pp. 645-658
-
-
Das, S.1
Paul, S.2
Dutta, C.3
-
15
-
-
0242290154
-
Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content
-
Singer GA, Hickey DA: Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content. Gene 2003, 317:39-47.
-
(2003)
Gene
, vol.317
, pp. 39-47
-
-
Singer, G.A.1
Hickey, D.A.2
-
16
-
-
0030732907
-
Representation of amino acid sequences in terms of interaction energy in protein globules
-
Berezovsky IN, Tumanyan VG, Esipova NG: Representation of amino acid sequences in terms of interaction energy in protein globules. FEBS Lett 1997, 418:43-46.
-
(1997)
FEBS Lett
, vol.418
, pp. 43-46
-
-
Berezovsky, I.N.1
Tumanyan, V.G.2
Esipova, N.G.3
-
17
-
-
0034017055
-
Factors enhancing protein thermostability
-
Kumar S, Tsai CJ, Nussinov R: Factors enhancing protein thermostability. Protein Eng 2000, 13:179-191.
-
(2000)
Protein Eng
, vol.13
, pp. 179-191
-
-
Kumar, S.1
Tsai, C.J.2
Nussinov, R.3
-
18
-
-
0029932580
-
Analysis of protein conformational characteristics related to thermostability
-
Querol E, Perez-Pons JA, Mozo-Villarias A: Analysis of protein conformational characteristics related to thermostability. Protein Eng 1996, 9:265-271.
-
(1996)
Protein Eng
, vol.9
, pp. 265-271
-
-
Querol, E.1
Perez-Pons, J.A.2
Mozo-Villarias, A.3
-
19
-
-
0027488713
-
Stabilization of creatinase from Pseudomonas putida by random mutagenesis
-
Schumann J, Bohm G, Schumacher G, Rudolph R, Jaenicke R: Stabilization of creatinase from Pseudomonas putida by random mutagenesis. Protein Sci 1993, 2:1612-1620.
-
(1993)
Protein Sci
, vol.2
, pp. 1612-1620
-
-
Schumann, J.1
Bohm, G.2
Schumacher, G.3
Rudolph, R.4
Jaenicke, R.5
-
20
-
-
0032438190
-
The stability of proteins in extreme environments
-
Jaenicke R, Bohm G: The stability of proteins in extreme environments. Curr Opin Struct Biol 1998, 8:738-748.
-
(1998)
Curr Opin Struct Biol
, vol.8
, pp. 738-748
-
-
Jaenicke, R.1
Bohm, G.2
-
21
-
-
0032514678
-
Protein thermostability above 100 degreesC: A key role for ionic interactions
-
Vetriani C, Maeder DL, Tolliday N, Yip KS, Stillman TJ, Britton KL, Rice DW, Klump HH, Robb FT: Protein thermostability above 100 degreesC: a key role for ionic interactions. Proc Natl Acad Sci USA 1998, 95:12300-12305.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 12300-12305
-
-
Vetriani, C.1
Maeder, D.L.2
Tolliday, N.3
Yip, K.S.4
Stillman, T.J.5
Britton, K.L.6
Rice, D.W.7
Klump, H.H.8
Robb, F.T.9
-
22
-
-
0026439763
-
Crystallization and preliminary X-ray investigation of bovine liver mitochondrial aldehyde dehydrogenase
-
Hurley TD, Weiner H: Crystallization and preliminary X-ray investigation of bovine liver mitochondrial aldehyde dehydrogenase. J Mol Biol 1992, 227:1255-1257.
-
(1992)
J Mol Biol
, vol.227
, pp. 1255-1257
-
-
Hurley, T.D.1
Weiner, H.2
-
23
-
-
0033538553
-
Transproteomic evidence of a loop-deletion mechanism for enhancing protein thermostability
-
Thompson MJ, Eisenberg D: Transproteomic evidence of a loop-deletion mechanism for enhancing protein thermostability. J Mol Biol 1999, 290:595-604.
-
(1999)
J Mol Biol
, vol.290
, pp. 595-604
-
-
Thompson, M.J.1
Eisenberg, D.2
-
24
-
-
1542361245
-
Optimum growth temperature and the base composition of open reading frames in prokaryotes
-
Lambros RJ, Mortimer JR, Forsdyke DR: Optimum growth temperature and the base composition of open reading frames in prokaryotes. Extremophiles 2003, 7:443-450.
-
(2003)
Extremophiles
, vol.7
, pp. 443-450
-
-
Lambros, R.J.1
Mortimer, J.R.2
Forsdyke, D.R.3
-
25
-
-
0036796799
-
Synonymous codon usage is subject to selection in thermophilic bacteria
-
Lynn DJ, Singer GA, Hickey DA: Synonymous codon usage is subject to selection in thermophilic bacteria. Nucleic Acids Res 2002, 30:4272-4277.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 4272-4277
-
-
Lynn, D.J.1
Singer, G.A.2
Hickey, D.A.3
-
26
-
-
0030900384
-
Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes
-
Galtier N, Lobry JR: Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes. J Mol Evol 1997, 44:632-636.
-
(1997)
J Mol Evol
, vol.44
, pp. 632-636
-
-
Galtier, N.1
Lobry, J.R.2
-
27
-
-
14344277180
-
Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium
-
Kawashima T, Amano N, Koike H, Makino S, Higuchi S, Kawashima-Ohya Y, Watanabe K, Yamazaki M, Kanehori K, Kawamoto T, et al.: Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium. Proc Natl Acad Sci USA 2000, 97:14257-14262.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 14257-14262
-
-
Kawashima, T.1
Amano, N.2
Koike, H.3
Makino, S.4
Higuchi, S.5
Kawashima-Ohya, Y.6
Watanabe, K.7
Yamazaki, M.8
Kanehori, K.9
Kawamoto, T.10
-
28
-
-
0035819839
-
High guanine-cytosine content is not an adaptation to high temperature: A comparative analysis amongst prokaryotes
-
Hurst LD, Merchant AR: High guanine-cytosine content is not an adaptation to high temperature: a comparative analysis amongst prokaryotes. Proc Biol Sci 2001, 268:493-497.
-
(2001)
Proc Biol Sci
, vol.268
, pp. 493-497
-
-
Hurst, L.D.1
Merchant, A.R.2
-
29
-
-
0036606141
-
Evidence for strong selective constraint acting on the nucleotide composition of 16S ribosomal RNA genes
-
Wang HC, Hickey DA: Evidence for strong selective constraint acting on the nucleotide composition of 16S ribosomal RNA genes. Nucleic Acids Res 2002, 30:2501-2507.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 2501-2507
-
-
Wang, H.C.1
Hickey, D.A.2
-
30
-
-
1542297746
-
Adaptive role of increased frequency of polypurine tracts in mRNA sequences of thermophilic prokaryotes
-
Paz A, Mester D, Baca I, Nevo E, Korol A: Adaptive role of increased frequency of polypurine tracts in mRNA sequences of thermophilic prokaryotes. Proc Natl Acad Sci USA 2004, 101:2951-2956.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 2951-2956
-
-
Paz, A.1
Mester, D.2
Baca, I.3
Nevo, E.4
Korol, A.5
-
31
-
-
0035312933
-
Identification of thermophilic species by the amino acid compositions deduced from their genomes
-
Kreil DP, Ouzounis CA: Identification of thermophilic species by the amino acid compositions deduced from their genomes. Nucleic Acids Res 2001, 29:1608-1615.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 1608-1615
-
-
Kreil, D.P.1
Ouzounis, C.A.2
-
32
-
-
0033616712
-
Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species
-
Haney PJ, Badger JH, Buldak GL, Reich CI, Woese CR, Olsen GJ: Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species. Proc Natl Acad Sci USA 1999, 96:3578-3583.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 3578-3583
-
-
Haney, P.J.1
Badger, J.H.2
Buldak, G.L.3
Reich, C.I.4
Woese, C.R.5
Olsen, G.J.6
-
33
-
-
0038583819
-
Compositional changes in RNA, DNA and proteins for bacterial adaptation to higher and lower temperatures
-
Nakashima H, Fukuchi S, Nishikawa K: Compositional changes in RNA, DNA and proteins for bacterial adaptation to higher and lower temperatures. J Biochem 2003, 133:507-513.
-
(2003)
J Biochem
, vol.133
, pp. 507-513
-
-
Nakashima, H.1
Fukuchi, S.2
Nishikawa, K.3
-
34
-
-
0021112868
-
Correlation of sequence hydrophobicities measures similarity in three-dimensional protein structure
-
Sweet RM, Eisenberg D: Correlation of sequence hydrophobicities measures similarity in three-dimensional protein structure. J Mol Biol 1983, 171:479-488.
-
(1983)
J Mol Biol
, vol.171
, pp. 479-488
-
-
Sweet, R.M.1
Eisenberg, D.2
-
35
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
Henikoff S, Henikoff JG: Amino acid substitution matrices from protein blocks. Proc Natl Acad Sci USA 1992, 89:10915-10919.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
36
-
-
0033593370
-
Crystal structure of intact elongation factor EF-Tu from Escherichia coli in GDP conformation at 2.05 A resolution
-
Song H, Parsons MR, Rowsell S, Leonard G, Phillips SE: Crystal structure of intact elongation factor EF-Tu from Escherichia coli in GDP conformation at 2.05 A resolution. J Mol Biot 1999, 285:1245-1256.
-
(1999)
J Mol Biol
, vol.285
, pp. 1245-1256
-
-
Song, H.1
Parsons, M.R.2
Rowsell, S.3
Leonard, G.4
Phillips, S.E.5
-
37
-
-
2142757231
-
Preformed structural elements feature in partner recognition by intrinsically unstructured proteins
-
Fuxreiter M, Simon I, Friedrich P, Tompa P: Preformed structural elements feature in partner recognition by intrinsically unstructured proteins. J Mol Biol 2004, 338:1015-1026.
-
(2004)
J Mol Biol
, vol.338
, pp. 1015-1026
-
-
Fuxreiter, M.1
Simon, I.2
Friedrich, P.3
Tompa, P.4
-
38
-
-
0042622240
-
GlobPlot: Exploring protein sequences for globularity and disorder
-
Linding R, Russell RB, Neduva V, Gibson TJ: GlobPlot: Exploring protein sequences for globularity and disorder. Nucleic Acids Res 2003, 31:3701-3708.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3701-3708
-
-
Linding, R.1
Russell, R.B.2
Neduva, V.3
Gibson, T.J.4
-
39
-
-
0037308511
-
Cost-minimization of amino acid usage
-
Seligmann H: Cost-minimization of amino acid usage. J Mol Evol 2003, 56:151-161.
-
(2003)
J Mol Evol
, vol.56
, pp. 151-161
-
-
Seligmann, H.1
-
40
-
-
24944461117
-
Compositional variation in bacterial genes and proteins with potential expression level
-
Das S, Ghosh S, Pan A, Dutta C: Compositional variation in bacterial genes and proteins with potential expression level. FEBS Lett 2005, 579:5205-5210.
-
(2005)
FEBS Lett
, vol.579
, pp. 5205-5210
-
-
Das, S.1
Ghosh, S.2
Pan, A.3
Dutta, C.4
-
42
-
-
30844449653
-
Contribution of Electrostatic Interactions, Compactness and Quaternary Structure to Protein Thermostability: Lessons from Structural Genomics of Thermotoga maritima
-
Robinson-Rechavi M, Alibes A, Godzik A: Contribution of Electrostatic Interactions, Compactness and Quaternary Structure to Protein Thermostability: Lessons from Structural Genomics of Thermotoga maritima. J Mol Biol 2006, 356:547-557.
-
(2006)
J Mol Biol
, vol.356
, pp. 547-557
-
-
Robinson-Rechavi, M.1
Alibes, A.2
Godzik, A.3
-
43
-
-
0035876847
-
Important inter-residue contacts for enhancing the thermal stability of thermophilic proteins
-
Gromiha MM: Important inter-residue contacts for enhancing the thermal stability of thermophilic proteins. Biophys Chem 2001, 91:71-77.
-
(2001)
Biophys Chem
, vol.91
, pp. 71-77
-
-
Gromiha, M.M.1
-
45
-
-
0034984373
-
Thermostability of proteins from Thermotoga maritima
-
Jaenicke R, Bohm G: Thermostability of proteins from Thermotoga maritima. Meth Enzymol 2001, 334:438-469.
-
(2001)
Meth Enzymol
, vol.334
, pp. 438-469
-
-
Jaenicke, R.1
Bohm, G.2
-
46
-
-
0035214616
-
Bivalent cations and amino-acid composition contribute to the thermostability of Bacillus licheniformis xylose isomerase
-
Vieille C, Epting KL, Kelly RM, Zeikus JG: Bivalent cations and amino-acid composition contribute to the thermostability of Bacillus licheniformis xylose isomerase. Eur J Biochem 2001, 268:6291-6301.
-
(2001)
Eur J Biochem
, vol.268
, pp. 6291-6301
-
-
Vieille, C.1
Epting, K.L.2
Kelly, R.M.3
Zeikus, J.G.4
-
47
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte J, Doolittle RF: A simple method for displaying the hydropathic character of a protein. J Mol Biol 1982, 157:105-132.
-
(1982)
J Mol Biol
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
48
-
-
0022609327
-
Local stability of DNA and RNA secondary structure and its relation to biological functions
-
Wada A, Suyama A: Local stability of DNA and RNA secondary structure and its relation to biological functions. Prog Biophys Mol Biol 1986, 47:113-157.
-
(1986)
Prog Biophys Mol Biol
, vol.47
, pp. 113-157
-
-
Wada, A.1
Suyama, A.2
-
49
-
-
4644280499
-
Solving the riddle of codon usage preferences: A test for translational selection
-
dos Reis M, Savva R, Wernisch L: Solving the riddle of codon usage preferences: a test for translational selection. Nucleic Acids Res 2004, 32:5036-5044.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 5036-5044
-
-
dos Reis, M.1
Savva, R.2
Wernisch, L.3
-
50
-
-
1842555142
-
The effect of expression levels on codon usage in Plasmodium falciparum
-
Peixoto L, Fernandez V, Musto H: The effect of expression levels on codon usage in Plasmodium falciparum. Parasitology 2004, 128:245-251.
-
(2004)
Parasitology
, vol.128
, pp. 245-251
-
-
Peixoto, L.1
Fernandez, V.2
Musto, H.3
-
51
-
-
0034212268
-
Chromosome replication, nucleoid segregation and cell division in archaea
-
Bernander R: Chromosome replication, nucleoid segregation and cell division in archaea. Trends Microbiol 2000, 8:278-283.
-
(2000)
Trends Microbiol
, vol.8
, pp. 278-283
-
-
Bernander, R.1
-
53
-
-
84872278297
-
-
National Centre for Biotechnology Information
-
National Centre for Biotechnology Information [http://www.ncbi.nlm.nih.gov/]
-
-
-
-
54
-
-
84872273089
-
-
Program CODONW 1.4.2
-
Program CODONW 1.4.2 [http://molbiol.ox.ac.uk/win95.codonW.zip]
-
-
-
-
55
-
-
0037109119
-
Use and misuse of correspondence analysis in codon usage studies
-
Perriere G, Thioulouse J: Use and misuse of correspondence analysis in codon usage studies. Nucleic Acids Res 2002, 30:4548-4555.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 4548-4555
-
-
Perriere, G.1
Thioulouse, J.2
-
56
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
57
-
-
0029884694
-
GOR method for predicting protein secondary structure from amino acid sequence
-
Garnier J, Gibrat JF, Robson B: GOR method for predicting protein secondary structure from amino acid sequence. Meth Enzymol 1996, 266:540-553.
-
(1996)
Meth Enzymol
, vol.266
, pp. 540-553
-
-
Garnier, J.1
Gibrat, J.F.2
Robson, B.3
-
58
-
-
0032568655
-
SMART, a simple modular architecture research tool: Identification of signaling domains
-
Schultz J, Milpetz F, Bork P, Ponting CP: SMART, a simple modular architecture research tool: identification of signaling domains. Proc Natl Acad Sci USA 1998, 95:5857-5864.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 5857-5864
-
-
Schultz, J.1
Milpetz, F.2
Bork, P.3
Ponting, C.P.4
-
59
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
Krogh A, Larsson B, von Heijne G, Sonnhammer EL: Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 2001, 305:567-580.
-
(2001)
J Mol Biol
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
von Heijne, G.3
Sonnhammer, E.L.4
-
60
-
-
84872269845
-
-
ExPASy Proteomics Server
-
ExPASy Proteomics Server [http://www.expasy.org/]
-
-
-
-
61
-
-
0023650543
-
The codon Adaptation Index - A measure of directional synonymous codon usage bias, and its potential applications
-
Sharp PM, Li WH: The codon Adaptation Index - a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res 1987, 15:1281-1295.
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 1281-1295
-
-
Sharp, P.M.1
Li, W.H.2
-
62
-
-
0028088517
-
Hydrophobicity, expressivity and aromaticity are the major trends of amino-acid usage in 999 Escherichia coli chromosome-encoded genes
-
Lobry JR, Gautier C: Hydrophobicity, expressivity and aromaticity are the major trends of amino-acid usage in 999 Escherichia coli chromosome-encoded genes. Nucleic Acids Res 1994, 22:3174-3180.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 3174-3180
-
-
Lobry, J.R.1
Gautier, C.2
-
63
-
-
0019287872
-
Thermostability and aliphatic index of globular proteins
-
Ikai A: Thermostability and aliphatic index of globular proteins. J Biochem 1980, 88:1895-1898.
-
(1980)
J Biochem
, vol.88
, pp. 1895-1898
-
-
Ikai, A.1
-
64
-
-
84872277948
-
-
SWISS-MODEL at ExPASy
-
SWISS-MODEL at ExPASy [http://swissmodel.expasy.org/]
-
-
-
-
65
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
29-32
-
Koradi R, Billeter M, Wuthrich K: MOLMOL: a program for display and analysis of macromolecular structures. J Mol Graph 1996, 14:51-55. 29-32
-
(1996)
J Mol Graph
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wuthrich, K.3
|