메뉴 건너뛰기




Volumn 66, Issue 1, 2010, Pages 1-12

Linking bacterial community structure to carbon fluxes in marine environments

Author keywords

Bacterial community; Biogeochemical cycle; Carbon flux; Microbial food webs; Microbial oceanography

Indexed keywords

BIOGEOCHEMICAL CYCLE; BIOGEOCHEMISTRY; CARBON FLUX; COMMUNITY COMPOSITION; FOOD WEB; GENOMICS; LITERATURE REVIEW; MARINE ENVIRONMENT; MICROBIAL COMMUNITY; MICROBIOLOGY;

EID: 77749301910     PISSN: 09168370     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10872-010-0001-4     Document Type: Review
Times cited : (30)

References (93)
  • 1
    • 33644961434 scopus 로고    scopus 로고
    • Measurement of Prochlorococcus ecotypes using real-time polymerase chain reaction reveals different abundances of genotypes with similar light physiologies
    • Ahlgren, N. A., G. Rocap and S. W. Chisholm (2006): Measurement of Prochlorococcus ecotypes using real-time polymerase chain reaction reveals different abundances of genotypes with similar light physiologies. Environ. Microbiol., 8, 441-454.
    • (2006) Environ. Microbiol. , vol.8 , pp. 441-454
    • Ahlgren, N.A.1    Rocap, G.2    Chisholm, S.W.3
  • 2
    • 34249903107 scopus 로고    scopus 로고
    • Seasonal variations in the contributions of different bacterial groups to the uptake of low-molecular-weight compounds in northwestern Mediterranean coastal waters
    • Alonso-Saez, L. and J. M. Gasol (2007): Seasonal variations in the contributions of different bacterial groups to the uptake of low-molecular-weight compounds in northwestern Mediterranean coastal waters. Appl. Environ. Microbiol., 73, 3528-3535.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 3528-3535
    • Alonso-Saez, L.1    Gasol, J.M.2
  • 3
    • 42349093774 scopus 로고    scopus 로고
    • Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques
    • Amann, R. and B. M. Fuchs (2008): Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques. Nature Rev. Microbiol., 6, 339-348.
    • (2008) Nature Rev. Microbiol. , vol.6 , pp. 339-348
    • Amann, R.1    Fuchs, B.M.2
  • 4
    • 1542513560 scopus 로고    scopus 로고
    • Microbes, molecules, and marine ecosystems
    • Azam, F. and A. Z. Worden (2004): Microbes, molecules, and marine ecosystems. Science, 303, 1622-1624.
    • (2004) Science , vol.303 , pp. 1622-1624
    • Azam, F.1    Worden, A.Z.2
  • 5
    • 44249104008 scopus 로고    scopus 로고
    • Linking microbial phylogeny to metabolic activity at the single-cell level by using enhanced element labeling-catalyzed reporter deposition fluorescence in situ hybridization (EL-FISH) and NanoSIMS
    • Behrens, S., T. Lösekann, J. Pett-Ridge, P. K. Weber, W. O. Ng, B. S. Stevenson, I. D. Hutcheon, D. A. Relman and A. M. Spormann (2008): Linking microbial phylogeny to metabolic activity at the single-cell level by using enhanced element labeling-catalyzed reporter deposition fluorescence in situ hybridization (EL-FISH) and NanoSIMS. Appl. Environ. Microbiol., 74, 3143-3150.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 3143-3150
    • Behrens, S.1    Lösekann, T.2    Pett-Ridge, J.3    Weber, P.K.4    Ng, W.O.5    Stevenson, B.S.6    Hutcheon, I.D.7    Relman, D.A.8    Spormann, A.M.9
  • 6
    • 84891296973 scopus 로고    scopus 로고
    • Photoheterotrophic marine prokaryotes
    • 2nd ed., D. L. Kirchman (Ed.), New Jersey: Wiley-Blackwell
    • Béjà, O. and M. T. Suzuki (2008): Photoheterotrophic marine prokaryotes. p. 131-157. In Microbial Ecology of the Oceans, 2nd ed., ed. by D. L. Kirchman, Wiley-Blackwell, New Jersey.
    • (2008) Microbial Ecology of the Oceans , pp. 131-157
    • Béjà, O.1    Suzuki, M.T.2
  • 7
    • 0034665853 scopus 로고    scopus 로고
    • Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea
    • Béjà, O., E. V. Koonin and M. T. Suzuki (2000): Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea. Science, 289, 1902-1906.
    • (2000) Science , vol.289 , pp. 1902-1906
    • Béjà, O.1    Koonin, E.V.2    Suzuki, M.T.3
  • 9
    • 0036222111 scopus 로고    scopus 로고
    • Compositional changes in free-living bacterial communities along a salinity gradient in two temperate estuaries
    • Bouvier, T. C. and P. A. del Giorgio (2002): Compositional changes in free-living bacterial communities along a salinity gradient in two temperate estuaries. Limnol. Oceanogr., 47, 453-470.
    • (2002) Limnol. Oceanogr. , vol.47 , pp. 453-470
    • Bouvier, T.C.1    del Giorgio, P.A.2
  • 10
    • 33846060282 scopus 로고    scopus 로고
    • Key role of selective viral-induced mortality in determining marine bacterial community composition
    • Bouvier, T. and P. A. del Giorgio (2007): Key role of selective viral-induced mortality in determining marine bacterial community composition. Environ. Microbiol., 9, 287-297.
    • (2007) Environ. Microbiol. , vol.9 , pp. 287-297
    • Bouvier, T.1    del Giorgio, P.A.2
  • 11
    • 58049120181 scopus 로고    scopus 로고
    • Marine viruses: Community dynamics, diversity and impact on microbial processes
    • 2nd ed., D. L. Kirchman (Ed.), New Jersey: Wiley-Blackwell
    • Breitbart, M., M. Middelboe and F. Rohwer (2008): Marine viruses: community dynamics, diversity and impact on microbial processes. p. 443-479. In Microbial Ecology of the Oceans, 2nd ed., ed. by D. L. Kirchman, Wiley-Blackwell, New Jersey.
    • (2008) Microbial Ecology of the Oceans , pp. 443-479
    • Breitbart, M.1    Middelboe, M.2    Rohwer, F.3
  • 12
    • 23944517269 scopus 로고    scopus 로고
    • Coupling 16S-ITS rDNA clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: Development and application to a time series
    • Brown, M. V., M. S. Schwalbach, I. Hewson and J. A. Fuhrman (2005): Coupling 16S-ITS rDNA clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: development and application to a time series. Environ. Microbiol., 7, 1466-1479.
    • (2005) Environ. Microbiol. , vol.7 , pp. 1466-1479
    • Brown, M.V.1    Schwalbach, M.S.2    Hewson, I.3    Fuhrman, J.A.4
  • 13
    • 66249117185 scopus 로고    scopus 로고
    • Resource control of bacterial dynamics in the sea
    • 2nd ed., D. L. Kirchman (Ed.), New Jersey: Wiley-Blackwell
    • Church, M. J. (2008): Resource control of bacterial dynamics in the sea. p. 335-382. In Microbial Ecology of the Oceans, 2nd ed., ed. by D. L. Kirchman, Wiley-Blackwell, New Jersey.
    • (2008) Microbial Ecology of the Oceans , pp. 335-382
    • Church, M.J.1
  • 14
    • 0141428760 scopus 로고    scopus 로고
    • Abundance and distribution of planktonic Archaea and Bacteria in the waters west of the Antarctic Peninsula
    • Church, M. J., E. F. DeLong, H. W. Ducklow, M. B. Karner, C. M. Preston and D. M. Karl (2003): Abundance and distribution of planktonic Archaea and Bacteria in the waters west of the Antarctic Peninsula. Limnol. Oceanogr., 48, 1893-1902.
    • (2003) Limnol. Oceanogr. , vol.48 , pp. 1893-1902
    • Church, M.J.1    Delong, E.F.2    Ducklow, H.W.3    Karner, M.B.4    Preston, C.M.5    Karl, D.M.6
  • 15
    • 0036407157 scopus 로고    scopus 로고
    • What are bacterial species?
    • Cohan, F. M. (2002): What are bacterial species? Annu. Rev. Microbiol., 56, 457-487.
    • (2002) Annu. Rev. Microbiol. , vol.56 , pp. 457-487
    • Cohan, F.M.1
  • 16
    • 0034068899 scopus 로고    scopus 로고
    • Natural assemblages of marine proteobacteria and members of the Cytophaga- Flavobacter cluster consuming low- and high-molecularweight dissolved organic matter
    • Cottrell, M. T. and D. L. Kirchman (2000): Natural assemblages of marine proteobacteria and members of the Cytophaga- Flavobacter cluster consuming low- and high-molecularweight dissolved organic matter. Appl. Environ. Microbiol., 66, 1692-1697.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1692-1697
    • Cottrell, M.T.1    Kirchman, D.L.2
  • 17
    • 0037250698 scopus 로고    scopus 로고
    • Contribution of major bacterial groups to bacterial biomass production (thymidine and leucine incorporation) in the Delaware estuary
    • Cottrell, M. T. and D. L. Kirchman (2003): Contribution of major bacterial groups to bacterial biomass production (thymidine and leucine incorporation) in the Delaware estuary. Limnol. Oceanogr., 48, 168-178.
    • (2003) Limnol. Oceanogr. , vol.48 , pp. 168-178
    • Cottrell, M.T.1    Kirchman, D.L.2
  • 18
    • 4143134295 scopus 로고    scopus 로고
    • Single-cell analysis of bacterial growth, cell size, and community structure in the Delaware estuary
    • Cottrell, M. T. and D. L. Kirchman (2004): Single-cell analysis of bacterial growth, cell size, and community structure in the Delaware estuary. Aquat. Microb. Ecol., 34, 139-149.
    • (2004) Aquat. Microb. Ecol. , vol.34 , pp. 139-149
    • Cottrell, M.T.1    Kirchman, D.L.2
  • 19
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • DeLong, E. F. (1992): Archaea in coastal marine environments. Proc. Nat. Acad. Sci. USA, 89, 5685-5689.
    • (1992) Proc. Nat. Acad. Sci. USA , vol.89 , pp. 5685-5689
    • Delong, E.F.1
  • 20
    • 66149119261 scopus 로고    scopus 로고
    • The microbial ocean from genomes to biomes
    • DeLong, E. F. (2009): The microbial ocean from genomes to biomes. Nature, 459, 200-206.
    • (2009) Nature , vol.459 , pp. 200-206
    • DeLong, E.F.1
  • 21
    • 25144462641 scopus 로고    scopus 로고
    • Genomic perspectives in microbial oceanography
    • DeLong, E. F. and D. M. Karl (2005): Genomic perspectives in microbial oceanography. Nature, 437, 336-342.
    • (2005) Nature , vol.437 , pp. 336-342
    • DeLong, E.F.1    Karl, D.M.2
  • 24
    • 0002335569 scopus 로고    scopus 로고
    • Bacterial production and biomass in the oceans
    • 1st ed., D. L. Kirchman (Ed.), New York: Wiley-Liss
    • Ducklow, H. W. (2000): Bacterial production and biomass in the oceans. p. 85-120. In Microbial Ecology of the Oceans, 1st ed., ed. by D. L. Kirchman, Wiley-Liss, New York.
    • (2000) Microbial Ecology of the Oceans , pp. 85-120
    • Ducklow, H.W.1
  • 25
    • 34147103873 scopus 로고    scopus 로고
    • Emergent biogeography of microbial communities in a model ocean
    • Follows, M. J., S Dutkiewicz, S. Grant and S. W. Chisholm (2007): Emergent biogeography of microbial communities in a model ocean. Nature, 315, 1843-1846.
    • (2007) Nature , vol.315 , pp. 1843-1846
    • Follows, M.J.1    Dutkiewicz, S.2    Grant, S.3    Chisholm, S.W.4
  • 26
    • 0033542481 scopus 로고    scopus 로고
    • Marine viruses and their biogeochemical and ecological effects
    • Fuhrman, J. A. (1999): Marine viruses and their biogeochemical and ecological effects. Nature, 399, 541-548.
    • (1999) Nature , vol.399 , pp. 541-548
    • Fuhrman, J.A.1
  • 27
    • 66149150877 scopus 로고    scopus 로고
    • Microbial community structure and its functional implications
    • Fuhrman, J. A. (2009): Microbial community structure and its functional implications. Nature, 459, 193-199.
    • (2009) Nature , vol.459 , pp. 193-199
    • Fuhrman, J.A.1
  • 28
    • 84891283485 scopus 로고    scopus 로고
    • Bacterial and Archaeal community structure and its patterns
    • 2nd ed., D. L. Kirchman (Ed.), New Jersey: Wiley-Blackwell
    • Fuhrman J. A. and Å. Hagström (2008). Bacterial and Archaeal community structure and its patterns. p. 45-90. In Microbial Ecology of the Oceans, 2nd ed., ed. by D. L. Kirchman, Wiley-Blackwell, New Jersey.
    • (2008) Microbial Ecology of the Oceans , pp. 45-90
    • Fuhrman, J.A.1    Hagström, Å.2
  • 29
    • 0026525546 scopus 로고
    • Novel major archaebacterial group from marine plankton
    • Fuhrman, J. A., K. McCallum and A. A. Davis (1992): Novel major archaebacterial group from marine plankton. Nature, 356, 148-149.
    • (1992) Nature , vol.356 , pp. 148-149
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 30
    • 0031664572 scopus 로고    scopus 로고
    • Direct determination of carbon and nitrogen contents of natural bacterial assemblages in marine environments
    • Fukuda, R., H. Ogawa, T. Nagata and I. Koike (1998): Direct determination of carbon and nitrogen contents of natural bacterial assemblages in marine environments. Appl. Environ. Microbiol., 64, 3352-3358.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3352-3358
    • Fukuda, R.1    Ogawa, H.2    Nagata, T.3    Koike, I.4
  • 31
    • 25144486755 scopus 로고    scopus 로고
    • Molecular diversity and ecology of microbial plankton
    • Giovannoni, S. J. and U. Stingl (2005): Molecular diversity and ecology of microbial plankton. Nature, 437, 343-348.
    • (2005) Nature , vol.437 , pp. 343-348
    • Giovannoni, S.J.1    Stingl, U.2
  • 32
    • 34548727434 scopus 로고    scopus 로고
    • The importance of culturing bacterioplankton in the "omics"age
    • Giovannoni, S. J. and U. Stingl (2007): The importance of culturing bacterioplankton in the "omics"age. Natl. Rev. Microbiol., 5, 820-826.
    • (2007) Natl. Rev. Microbiol. , vol.5 , pp. 820-826
    • Giovannoni, S.J.1    Stingl, U.2
  • 33
  • 35
    • 17644439150 scopus 로고    scopus 로고
    • Bacterioplankton compositions of lakes and oceans: A first comparison based on fluorescence in situ hybridization
    • Glöckner, F. O., B. M. Fuchs and R. Amann (1999): Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Appl. Environ. Microbiol., 65, 3721-3726.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3721-3726
    • Glöckner, F.O.1    Fuchs, B.M.2    Amann, R.3
  • 36
    • 0342940789 scopus 로고    scopus 로고
    • Numerical dominance of a group of marine bacteria in the alpha-subclass of the class Proteobacteria in coastal seawater
    • González, J. M. and M. A. Moran (1997): Numerical dominance of a group of marine bacteria in the alpha-subclass of the class Proteobacteria in coastal seawater. Appl. Environ. Microbiol., 63, 4237-4242.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4237-4242
    • González, J.M.1    Moran, M.A.2
  • 38
    • 4143089332 scopus 로고    scopus 로고
    • Individual cell growth rates of marine bacteria, measured by bromodeoxyuridine incorporation
    • Hamasaki, K., R. A. Long and F. Azam (2004): Individual cell growth rates of marine bacteria, measured by bromodeoxyuridine incorporation. Aquat. Microb. Ecol., 35, 217-227.
    • (2004) Aquat. Microb. Ecol. , vol.35 , pp. 217-227
    • Hamasaki, K.1    Long, R.A.2    Azam, F.3
  • 39
    • 0017654644 scopus 로고
    • Use of nuclepore filters for counting bacteria by fluorescence microscopy
    • Hobbie, J. E., R. J. Daley and S. Jasper (1977): Use of nuclepore filters for counting bacteria by fluorescence microscopy. Appl. Environ. Microbiol., 33, 1225-1228.
    • (1977) Appl. Environ. Microbiol. , vol.33 , pp. 1225-1228
    • Hobbie, J.E.1    Daley, R.J.2    Jasper, S.3
  • 40
    • 34249950990 scopus 로고    scopus 로고
    • Raman-FISH: Combining stable-isotope Raman spectroscopy and fluorescence in situ hybridization for the single cell analysis of identity and function
    • Huang, W. E., K. Stoecker, R. Griffiths, L. Newbold, H. Daims, A. S. Whiteley and M. Wagner (2007): Raman-FISH: combining stable-isotope Raman spectroscopy and fluorescence in situ hybridization for the single cell analysis of identity and function. Environ. Microbiol., 9, 1878-1889.
    • (2007) Environ. Microbiol. , vol.9 , pp. 1878-1889
    • Huang, W.E.1    Stoecker, K.2    Griffiths, R.3    Newbold, L.4    Daims, H.5    Whiteley, A.S.6    Wagner, M.7
  • 41
    • 33645216333 scopus 로고    scopus 로고
    • Niche partitioning among Prochloroccus ecotyps along ocean-scale environmental gradients
    • Johnson, Z. I., E. R. Zinser, A. Coe, N. P. McNulty, E. M. Woodward and S. W. Chisholm (2006): Niche partitioning among Prochloroccus ecotyps along ocean-scale environmental gradients. Science, 311, 1737-1740.
    • (2006) Science , vol.311 , pp. 1737-1740
    • Johnson, Z.I.1    Zinser, E.R.2    Coe, A.3    McNulty, N.P.4    Woodward, E.M.5    Chisholm, S.W.6
  • 42
    • 84891336156 scopus 로고    scopus 로고
    • Protistan grazing on marine bacterioplankton
    • 2nd ed., D. L. Kirchman (Ed.), New Jersey: Wiley- Blackwell
    • Jürgens, K. and R. Massana (2008): Protistan grazing on marine bacterioplankton. p. 383-441. In Microbial Ecology of the Oceans, 2nd ed., ed. by D. L. Kirchman, Wiley- Blackwell, New Jersey.
    • (2008) Microbial Ecology of the Oceans , pp. 383-441
    • Jürgens, K.1    Massana, R.2
  • 43
    • 0035945618 scopus 로고    scopus 로고
    • Archaeal dominance in the mesopelagic zone of the Pacific Ocean
    • Karner, M. B., E. F. DeLong and D. M. Karl (2001): Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature, 409, 507-510.
    • (2001) Nature , vol.409 , pp. 507-510
    • Karner, M.B.1    DeLong, E.F.2    Karl, D.M.3
  • 44
    • 32044444305 scopus 로고    scopus 로고
    • Recognition of individual genes in diverse microorganisms by cycling primed in situ amplification
    • Kenzaka, T., S. Takami, N. Yamaguchi, K. Tani and M. Nasu (2005): Recognition of individual genes in diverse microorganisms by cycling primed in situ amplification. Appl. Environ. Microbiol., 71, 7236-7244.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 7236-7244
    • Kenzaka, T.1    Takami, S.2    Yamaguchi, N.3    Tani, K.4    Nasu, M.5
  • 45
    • 0002759409 scopus 로고    scopus 로고
    • Uptake and regulation of inorganic nutrients by marine heterotrophic bacteria
    • 1st ed., D. L. Kirchman (Ed.), New York: Wiley-Liss
    • Kirchman, D. L. (2000): Uptake and regulation of inorganic nutrients by marine heterotrophic bacteria. p. 261-288. In Microbial Ecology of the Oceans, 1st ed., ed. by D. L. Kirchman, Wiley-Liss, New York.
    • (2000) Microbial Ecology of the Oceans , pp. 261-288
    • Kirchman, D.L.1
  • 48
    • 0018423107 scopus 로고
    • Tentative direct microscopic method for counting living marine-bacteria
    • Kogure, K., U. Simidu and N. Taga (1979): Tentative direct microscopic method for counting living marine-bacteria. Can. J. Microbiol., 25, 415-420.
    • (1979) Can. J. Microbiol. , vol.25 , pp. 415-420
    • Kogure, K.1    Simidu, U.2    Taga, N.3
  • 51
    • 20444408325 scopus 로고    scopus 로고
    • Biomass production and assimilation of dissolved organic matter by SAR11 bacteria in the Northwest Atlantic Ocean
    • Malmstrom, R. R., M. T. Cottrell, H. Elifantz and D. L. Kirchman (2005): Biomass production and assimilation of dissolved organic matter by SAR11 bacteria in the Northwest Atlantic Ocean. Appl. Environ. Microbiol., 71, 2979-2986.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 2979-2986
    • Malmstrom, R.R.1    Cottrell, M.T.2    Elifantz, H.3    Kirchman, D.L.4
  • 52
    • 29144504169 scopus 로고    scopus 로고
    • Visualization and enumeration of bacteria carrying a specific gene sequence by in situ rolling circle amplification
    • Maruyama, F., T. Kenzaka, N. Yamaguchi, K. Tani and M. Nasu (2005): Visualization and enumeration of bacteria carrying a specific gene sequence by in situ rolling circle amplification. Appl. Environ. Microbiol., 71, 7933-7940.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 7933-7940
    • Maruyama, F.1    Kenzaka, T.2    Yamaguchi, N.3    Tani, K.4    Nasu, M.5
  • 53
    • 0033784827 scopus 로고    scopus 로고
    • Bacterial growth rate and marine virushost dynamics
    • Middelboe, M. (2000): Bacterial growth rate and marine virushost dynamics. Microb. Ecol., 40, 114-124.
    • (2000) Microb. Ecol. , vol.40 , pp. 114-124
    • Middelboe, M.1
  • 54
    • 43549083658 scopus 로고    scopus 로고
    • Functional consequences of viral impacts on bacterial communities: A food-web model analysis
    • Miki, T., T. Nakazawa, T. Yokokawa and T. Nagata (2008a): Functional consequences of viral impacts on bacterial communities: a food-web model analysis. Freshwater Biol., 53, 1142-1153.
    • (2008) Freshwater Biol. , vol.53 , pp. 1142-1153
    • Miki, T.1    Nakazawa, T.2    Yokokawa, T.3    Nagata, T.4
  • 55
    • 53549116171 scopus 로고    scopus 로고
    • Immigration of prokaryotes to local environments enhances remineralization efficiency of sinking particles: A metacommunity model
    • Miki, T., T. Yokokawa, T. Nagata and N. Yamamura (2008b): Immigration of prokaryotes to local environments enhances remineralization efficiency of sinking particles: a metacommunity model. Mar. Ecol. Prog. Ser., 366, 1-14.
    • (2008) Mar. Ecol. Prog. Ser. , vol.366 , pp. 1-14
    • Miki, T.1    Yokokawa, T.2    Nagata, T.3    Yamamura, N.4
  • 56
    • 72549110080 scopus 로고    scopus 로고
    • Vertically structured prokaryotic community can control the efficiency of the biological pump in the oceans
    • doi: 10. 1007/s12080-009-0042-8
    • Miki, T., L. Giuggioli, Y. Kobayashi, T. Nagata and S. A. Levin (2009): Vertically structured prokaryotic community can control the efficiency of the biological pump in the oceans. Theor. Ecol., doi: 10. 1007/s12080-009-0042-8.
    • (2009) Theor. Ecol.
    • Miki, T.1    Giuggioli, L.2    Kobayashi, Y.3    Nagata, T.4    Levin, S.A.5
  • 57
    • 77749270505 scopus 로고    scopus 로고
    • Genomics and metagenomics of marine prokaryotes
    • 2nd ed., D. L. Kirchman (Ed.), New Jersey: Wiley-Blackwell
    • Moran, M. A. (2008): Genomics and metagenomics of marine prokaryotes. p. 91-129. In Microbial Ecology of the Oceans, 2nd ed., ed. by D. L. Kirchman, Wiley-Blackwell, New Jersey.
    • (2008) Microbial Ecology of the Oceans , pp. 91-129
    • Moran, M.A.1
  • 59
    • 42149184998 scopus 로고    scopus 로고
    • Enhancement of viral production by addition of nitrogen or nitrogen plus carbon in subtropical surface waters of the South Pacific
    • Motegi, C. and T. Nagata (2007): Enhancement of viral production by addition of nitrogen or nitrogen plus carbon in subtropical surface waters of the South Pacific. Aquat. Microb. Ecol., 48, 27-34.
    • (2007) Aquat. Microb. Ecol. , vol.48 , pp. 27-34
    • Motegi, C.1    Nagata, T.2
  • 61
    • 84891301536 scopus 로고    scopus 로고
    • Organic matter-bacteria interactions in seawater
    • 2nd ed., D. L. Kirchman (Ed.), New Jersey: Wiley-Blackwell
    • Nagata, T. (2008): Organic matter-bacteria interactions in seawater. p. 207-241. In Microbial Ecology of the Oceans, 2nd ed., ed. by D. L. Kirchman, Wiley-Blackwell, New Jersey.
    • (2008) Microbial Ecology of the Oceans , pp. 207-241
    • Nagata, T.1
  • 62
    • 0034887674 scopus 로고    scopus 로고
    • Basinscale geographic patterns of bacterioplankton biomass and production in the subarctic Pacific, July-September 1997
    • Nagata, T., R. Fukuda, H. Fukuda and I. Koike (2001): Basinscale geographic patterns of bacterioplankton biomass and production in the subarctic Pacific, July-September 1997. J. Oceanogr., 57, 301-313.
    • (2001) J. Oceanogr. , vol.57 , pp. 301-313
    • Nagata, T.1    Fukuda, R.2    Fukuda, H.3    Koike, I.4
  • 63
    • 42149093762 scopus 로고    scopus 로고
    • Alphaproteobacterial dominance in a large mesotrophic lake (Lake Biwa, Japan)
    • Nishimura, Y. and T. Nagata (2007): Alphaproteobacterial dominance in a large mesotrophic lake (Lake Biwa, Japan). Aquat. Microb. Ecol., 49, 231-240.
    • (2007) Aquat. Microb. Ecol. , vol.49 , pp. 231-240
    • Nishimura, Y.1    Nagata, T.2
  • 64
    • 34547579868 scopus 로고    scopus 로고
    • Genotypic microbial community profiling: A critical technical review
    • Nocker, A., M. Burr and A. K. Camper (2007): Genotypic microbial community profiling: A critical technical review. Microb. Ecol., 54, 276-289.
    • (2007) Microb. Ecol. , vol.54 , pp. 276-289
    • Nocker, A.1    Burr, M.2    Camper, A.K.3
  • 65
    • 0023227817 scopus 로고
    • On the relation between dry-matter and volume of bacteria
    • Norland, S., M. Heldal and O. Tumyr (1987): On the relation between dry-matter and volume of bacteria. Microb. Ecol., 13, 95-101.
    • (1987) Microb. Ecol. , vol.13 , pp. 95-101
    • Norland, S.1    Heldal, M.2    Tumyr, O.3
  • 66
    • 0030982247 scopus 로고    scopus 로고
    • A molecular view of microbial diversity and the biosphere
    • Pace, N. R. (1997): A molecular view of microbial diversity and the biosphere. Science, 276, 734-740.
    • (1997) Science , vol.276 , pp. 734-740
    • Pace, N.R.1
  • 67
    • 21344473000 scopus 로고    scopus 로고
    • Predation on prokaryotes in the water column and its ecological implications
    • Pernthaler, J. (2005): Predation on prokaryotes in the water column and its ecological implications. Natl. Rev. Microbiol., 3, 537-546.
    • (2005) Natl. Rev. Microbiol. , vol.3 , pp. 537-546
    • Pernthaler, J.1
  • 68
    • 0030784424 scopus 로고    scopus 로고
    • In situ classification and image cytometry of pelagic bacteria from a high mountain lake (Gossenkollesee, Austria)
    • Pernthaler, J., A. Alfreider, T. Posch, S. Andreatta and R. Psenner (1997): In situ classification and image cytometry of pelagic bacteria from a high mountain lake (Gossenkollesee, Austria). Appl. Environ. Microbiol., 63, 4778-4783.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4778-4783
    • Pernthaler, J.1    Alfreider, A.2    Posch, T.3    Andreatta, S.4    Psenner, R.5
  • 70
    • 61949363370 scopus 로고    scopus 로고
    • New image analysis tool to study biomass and morphotypes of three major bacterioplankton groups in an alpine lake
    • Posch, T., J. Franzoi, M. Prader and M. M. Salcher (2009): New image analysis tool to study biomass and morphotypes of three major bacterioplankton groups in an alpine lake. Aquat. Microb. Ecol., 54, 113-126.
    • (2009) Aquat. Microb. Ecol. , vol.54 , pp. 113-126
    • Posch, T.1    Franzoi, J.2    Prader, M.3    Salcher, M.M.4
  • 71
    • 0037043731 scopus 로고    scopus 로고
    • Cultivation of the ubiquitous SAR11 marine bacterioplankton clade
    • Rappé, M. S., S. A. Connon, K. L. Vergin and S. J. Giovannoni (2002): Cultivation of the ubiquitous SAR11 marine bacterioplankton clade. Nature, 418, 630-633.
    • (2002) Nature , vol.418 , pp. 630-633
    • Rappé, M.S.1    Connon, S.A.2    Vergin, K.L.3    Giovannoni, S.J.4
  • 72
    • 0037461960 scopus 로고    scopus 로고
    • Composition and dynamics of particle-associated and free-living bacterial communities in the Weser estuary, Germany
    • Selje, N. and M. Simon (2003): Composition and dynamics of particle-associated and free-living bacterial communities in the Weser estuary, Germany. Aquat. Microb. Ecol., 30, 221-237.
    • (2003) Aquat. Microb. Ecol. , vol.30 , pp. 221-237
    • Selje, N.1    Simon, M.2
  • 73
    • 0842285837 scopus 로고    scopus 로고
    • A newly discovered Roseobacter cluster in temperate and polar oceans
    • Selje, N., M. Simon and T. Brinkhoff (2004): A newly discovered Roseobacter cluster in temperate and polar oceans. Nature, 427, 445-448.
    • (2004) Nature , vol.427 , pp. 445-448
    • Selje, N.1    Simon, M.2    Brinkhoff, T.3
  • 76
    • 0024005650 scopus 로고
    • Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology
    • Stahl, D. A., B. Flesher, H. R. Mansfield and L. Montgomery (1988): Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology. Appl. Environ. Microbiol., 54, 1079-1084.
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 1079-1084
    • Stahl, D.A.1    Flesher, B.2    Mansfield, H.R.3    Montgomery, L.4
  • 77
    • 0002232851 scopus 로고    scopus 로고
    • Marine prokaryote diversity
    • J. T. Staley and A. L. Reysenbach (Eds.), New York: Wiley-Liss
    • Suzuki, M. T. and E. F. DeLong (2002): Marine prokaryote diversity. p. 209-234. In Biodiversity of Microbial Life, ed. by J. T. Staley and A. L. Reysenbach, Wiley-Liss, New York.
    • (2002) Biodiversity of Microbial Life , pp. 209-234
    • Suzuki, M.T.1    DeLong, E.F.2
  • 78
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki, M. T. and S. J. Giovannoni (1996): Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol., 62, 625-630.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 79
    • 0035972956 scopus 로고    scopus 로고
    • Quantitative mapping of bacterioplankton populations in seawater: Field tests across an upwelling plume in Monterey Bay
    • Suzuki, M. T., C. M. Preston, F. P. Chavez and E. F. DeLong (2001): Quantitative mapping of bacterioplankton populations in seawater: field tests across an upwelling plume in Monterey Bay. Aquat. Microb. Ecol., 24, 117-127.
    • (2001) Aquat. Microb. Ecol. , vol.24 , pp. 117-127
    • Suzuki, M.T.1    Preston, C.M.2    Chavez, F.P.3    DeLong, E.F.4
  • 80
    • 3242797565 scopus 로고    scopus 로고
    • Combining catalyzed reporter depositionfluorescence in situ hybridization and microautoradiography to detect substrate utilization by bacteria and archaea in the deep ocean
    • Teira, E., T. Reinthaler, A. Pernthaler, J. Pernthaler and G. J. Herndl (2004): Combining catalyzed reporter depositionfluorescence in situ hybridization and microautoradiography to detect substrate utilization by bacteria and archaea in the deep ocean. Appl. Environ. Microbiol., 70, 4411-4414.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 4411-4414
    • Teira, E.1    Reinthaler, T.2    Pernthaler, A.3    Pernthaler, J.4    Herndl, G.J.5
  • 81
    • 32944469326 scopus 로고    scopus 로고
    • Archaeal uptake of enantiomeric amino acids in the mesoand bathypelagic waters of the North Atlantic
    • Teira, E., H. van Aken, C. Veth and G. J. Herndl (2006): Archaeal uptake of enantiomeric amino acids in the mesoand bathypelagic waters of the North Atlantic. Limnol. Oceanogr., 51, 60-69.
    • (2006) Limnol. Oceanogr. , vol.51 , pp. 60-69
    • Teira, E.1    van Aken, H.2    Veth, C.3    Herndl, G.J.4
  • 82
    • 0033826796 scopus 로고    scopus 로고
    • Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems
    • Thingstad, T. F. (2000): Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems. Limnol. Oceanogr., 45, 1320-1328.
    • (2000) Limnol. Oceanogr. , vol.45 , pp. 1320-1328
    • Thingstad, T.F.1
  • 83
    • 0002058563 scopus 로고    scopus 로고
    • Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand
    • Thingstad, T. F. and R Lignell (1997): Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand. Aquat. Microb. Ecol., 13, 19-27.
    • (1997) Aquat. Microb. Ecol. , vol.13 , pp. 19-27
    • Thingstad, T.F.1    Lignell, R.2
  • 84
    • 44849088381 scopus 로고    scopus 로고
    • Abundance and activity of Chloroflexi-type SAR202 bacterioplankton in the meso- and bathypelagic waters of the (sub) tropical Atlantic
    • Varela, M. M., H. M. van Aken and G. J. Herndl (2008): Abundance and activity of Chloroflexi-type SAR202 bacterioplankton in the meso- and bathypelagic waters of the (sub) tropical Atlantic. Environ. Microbiol., 10, 1903-1911.
    • (2008) Environ. Microbiol. , vol.10 , pp. 1903-1911
    • Varela, M.M.1    van Aken, H.M.2    Herndl, G.J.3
  • 86
    • 25144475117 scopus 로고    scopus 로고
    • Abundances, identity, and growth state of actinobacteria in mountain lakes of different UV transparency
    • Warnecke, F., R. Sommaruga, R. Sekar, J. S. Hofer and J. Pernthaler (2005): Abundances, identity, and growth state of actinobacteria in mountain lakes of different UV transparency. Appl. Environ. Microbiol., 71, 5551-5559.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 5551-5559
    • Warnecke, F.1    Sommaruga, R.2    Sekar, R.3    Hofer, J.S.4    Pernthaler, J.5
  • 87
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese, C. R. (1987): Bacterial evolution. Microbiol. Rev., 51, 221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 89
    • 32044435609 scopus 로고    scopus 로고
    • Growth and grazing mortality rates of phylogenetic groups of bacterioplankton in coastal marine environments
    • Yokokawa, T. and T. Nagata (2005): Growth and grazing mortality rates of phylogenetic groups of bacterioplankton in coastal marine environments. Appl. Environ. Microbiol., 71, 6799-6807.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 6799-6807
    • Yokokawa, T.1    Nagata, T.2
  • 90
    • 4944253045 scopus 로고    scopus 로고
    • Growth rate of the major phylogenetic bacterial groups in the Delaware estuary
    • Yokokawa, T., T. Nagata, M. T. Cottrell and D. L. Kirchman (2004): Growth rate of the major phylogenetic bacterial groups in the Delaware estuary. Limnol. Oceanogr., 49, 1620-1629.
    • (2004) Limnol. Oceanogr. , vol.49 , pp. 1620-1629
    • Yokokawa, T.1    Nagata, T.2    Cottrell, M.T.3    Kirchman, D.L.4
  • 91
    • 33747605786 scopus 로고    scopus 로고
    • Contribution of major bacterial groups to bacterial biomass production along a salinity gradient in the South China Sea
    • Zhang, Y., N. Z. Jiao, M. T. Cottrell and D. L. Kirchman (2006): Contribution of major bacterial groups to bacterial biomass production along a salinity gradient in the South China Sea. Aquat. Microb. Ecol., 43, 233-241.
    • (2006) Aquat. Microb. Ecol. , vol.43 , pp. 233-241
    • Zhang, Y.1    Jiao, N.Z.2    Cottrell, M.T.3    Kirchman, D.L.4
  • 92
    • 0035516025 scopus 로고    scopus 로고
    • Comparison of cellular and biomass specific activities of dominant bacterioplankton groups in stratified waters of the Celtic Sea
    • Zubkov, M. V., B. M. Fuchs, P. H. Burkill and R. Amann (2001): Comparison of cellular and biomass specific activities of dominant bacterioplankton groups in stratified waters of the Celtic Sea. Appl. Environ. Microbiol., 67, 5210-5218.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 5210-5218
    • Zubkov, M.V.1    Fuchs, B.M.2    Burkill, P.H.3    Amann, R.4
  • 93
    • 0346964274 scopus 로고    scopus 로고
    • Recognition of individual genes in a single bacterial cell by fluorescence in situ hybridization - RING-FISH
    • Zwirglmaier, K., W. Ludwig and K. H. Schleifer (2004): Recognition of individual genes in a single bacterial cell by fluorescence in situ hybridization - RING-FISH. Mol. Microbiol., 51, 89-96.
    • (2004) Mol. Microbiol. , vol.51 , pp. 89-96
    • Zwirglmaier, K.1    Ludwig, W.2    Schleifer, K.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.