-
1
-
-
3242884054
-
Fine-scale phylogenetic architecture of a complex bacterial community
-
ACINAS, S. G., AND OTHERS. 2004. Fine-scale phylogenetic architecture of a complex bacterial community. Nature 430: 551-554.
-
(2004)
Nature
, vol.430
, pp. 551-554
-
-
Acinas, S.G.1
-
2
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
AMANN, R. I., W. LUDWIG, AND K. H. SCHLEIFER. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiological Reviews 59: 143-169.
-
(1995)
Microbiological Reviews
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
3
-
-
0000450150
-
Bacterial diversity in an arctic lake: A freshwater SAR11 cluster
-
BAHR, M., J. E. HOBBIE, AND M. L. SOGIN. 1996. Bacterial diversity in an arctic lake: A freshwater SAR11 cluster. Aquat. Microb. Ecol. 11: 271-277.
-
(1996)
Aquat. Microb. Ecol.
, vol.11
, pp. 271-277
-
-
Bahr, M.1
Hobbie, J.E.2
Sogin, M.L.3
-
4
-
-
0036222111
-
Compositional changes in free-living bacterial communities along a salinity gradient in two temperate estuaries
-
BOUVIER, T. C., AND P. A. DEL GIORGIO. 2002. Compositional changes in free-living bacterial communities along a salinity gradient in two temperate estuaries. Limnol. Oceanogr. 47: 453-470.
-
(2002)
Limnol. Oceanogr.
, vol.47
, pp. 453-470
-
-
Bouvier, T.C.1
Del Giorgio, P.A.2
-
5
-
-
23744498387
-
Composition of estuarine bacterial communities assessed by denaturing gradient gel electrophoresis and fluorescence in situ hybridization
-
CASTLE, D., AND D. L. KIRCHMAN. 2004. Composition of estuarine bacterial communities assessed by denaturing gradient gel electrophoresis and fluorescence in situ hybridization. Limnol. Oceanogr.: Methods 2: 303-314.
-
(2004)
Limnol. Oceanogr.: Methods
, vol.2
, pp. 303-314
-
-
Castle, D.1
Kirchman, D.L.2
-
6
-
-
0034469143
-
Community composition of marine bacterioplankton determined by 16S rDNA clone libraries and fluorescence in situ hybridization
-
COTTRELL, M. T., AND D. L. KIRCHMAN. 2000a. Community composition of marine bacterioplankton determined by 16S rDNA clone libraries and fluorescence in situ hybridization. Appl. Environ. Microbiol. 66: 5116-5122.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 5116-5122
-
-
Cottrell, M.T.1
Kirchman, D.L.2
-
7
-
-
0034068899
-
Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high- molecular-weight dissolved organic matter
-
_, AND _. 2000b. Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high- molecular-weight dissolved organic matter. Appl. Environ. Microbiol. 66: 1692-1697.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 1692-1697
-
-
-
8
-
-
0037250698
-
Contribution of major bacterial groups to bacterial biomass production (thymidine and leucine incorporation) in the Delaware Estuary
-
_, AND _. 2003. Contribution of major bacterial groups to bacterial biomass production (thymidine and leucine incorporation) in the Delaware Estuary. Limnol. Oceanogr. 48: 168-178.
-
(2003)
Limnol. Oceanogr.
, vol.48
, pp. 168-178
-
-
-
9
-
-
4143134295
-
Single-cell analysis of bacterial growth, cell size, and community structure in the Delaware Estuary
-
_, AND _. 2004. Single-cell analysis of bacterial growth, cell size, and community structure in the Delaware Estuary. Aquat. Microb. Ecol. 34: 139-149.
-
(2004)
Aquat. Microb. Ecol.
, vol.34
, pp. 139-149
-
-
-
10
-
-
85039367580
-
Bacterial diversity of metagenomic and PCR libraries from the Delaware River
-
In press
-
_, L. A. WAIDNER, L. YU, AND D. L. KIRCHMAN. In press. Bacterial diversity of metagenomic and PCR libraries from the Delaware River. Environ. Microbiol.
-
Environ. Microbiol.
-
-
Waidner, L.A.1
Yu, L.2
Kirchman, D.L.3
-
11
-
-
0032976388
-
Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia River, its estuary, and the adjacent coastal ocean
-
CRUMP, B. C., E. V. ARMBRUST, AND J. A. BAROSS. 1999. Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia River, its estuary, and the adjacent coastal ocean. Appl. Environ. Microbiol. 65: 3192-3204.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3192-3204
-
-
Crump, B.C.1
Armbrust, E.V.2
Baross, J.A.3
-
12
-
-
1642376424
-
Microbial biogeography along an estuarine salinity gradient: Combined influences of bacterial growth and residence time. Appl
-
_, C. S. HOPKINSON, M. L. SOGIN, AND J. E. HOBBIE. 2004. Microbial biogeography along an estuarine salinity gradient: Combined influences of bacterial growth and residence time. Appl. Environ. Microbiol. 70: 1494-1505.
-
(2004)
Environ. Microbiol.
, vol.70
, pp. 1494-1505
-
-
Hopkinson, C.S.1
Sogin, M.L.2
Hobbie, J.E.3
-
13
-
-
0035514014
-
Isolation of novel pelagic bacteria from the German Bight and their seasonal contributions to surface picoplankton
-
EILERS, H., J. PERNTHALER, J. PEPLIES, E O. GLÖCKNER, G. GERDTS, AND R. AMANN. 2001. Isolation of novel pelagic bacteria from the German Bight and their seasonal contributions to surface picoplankton. Appl. Environ. Microbiol. 67: 5134-5142.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 5134-5142
-
-
Eilers, H.1
Pernthaler, J.2
Peplies, J.3
Glöckner, E.O.4
Gerdts, G.5
Amann, R.6
-
14
-
-
0000122573
-
PHYLIP - Phylogeny inference package (version 3.2)
-
FELSENSTEIN, J. 1989. PHYLIP - Phylogeny inference package (version 3.2). Cladistics 5: 164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
15
-
-
0036161361
-
A transplant experiment to identify the factors controlling bacterial abundance, activity, production, and community composition in a eutrophic canyon-shaped reservoir
-
GASOL, J. M., AND OTHERS. 2002. A transplant experiment to identify the factors controlling bacterial abundance, activity, production, and community composition in a eutrophic canyon-shaped reservoir. Limnol. Oceanogr. 47:62-11.
-
(2002)
Limnol. Oceanogr.
, vol.47
, pp. 62-11
-
-
Gasol, J.M.1
-
16
-
-
0000262823
-
Evolution, diversity and molecular ecology of marine prokaryotes
-
D. L. Kirchman [ed.]. Wiley Interscience
-
GIOVANNONI, S. J., AND M. S. RAPPÉ. 2000. Evolution, diversity and molecular ecology of marine prokaryotes, p. 47-84. In D. L. Kirchman [ed.], Microbial ecology of the ocean. Wiley Interscience.
-
(2000)
Microbial Ecology of the Ocean
, pp. 47-84
-
-
Giovannoni, S.J.1
Rappé, M.S.2
-
17
-
-
17644439150
-
Bacterioplankton compositions of lakes and oceans: A first comparison based on fluorescence in situ hybridization
-
GLÖCKNER, F. O., B. M. FUCHS, AND R. AMANN. 1999. Bacterioplankton compositions of lakes and oceans: A first comparison based on fluorescence in situ hybridization. Appl. Environ. Microbiol. 65: 3721-3726.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3721-3726
-
-
Glöckner, F.O.1
Fuchs, B.M.2
Amann, R.3
-
18
-
-
0033754255
-
Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria
-
AND OTHERS
-
_, AND OTHERS. 2000. Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria. Appl. Environ. Microbiol. 66: 5053-5065.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 5053-5065
-
-
-
19
-
-
0037742699
-
Bacterial diversity patterns along a gradient of primary production
-
HORNER-DEVINE, M. C., M. A. LEIBOLD, V. H. SMITH, AND B. J. M. BOHANNAN. 2003. Bacterial diversity patterns along a gradient of primary production. Ecol. Lett. 6: 613-622.
-
(2003)
Ecol. Lett.
, vol.6
, pp. 613-622
-
-
Horner-Devine, M.C.1
Leibold, M.A.2
Smith, V.H.3
Bohannan, B.J.M.4
-
20
-
-
0030620894
-
Determination of active marine bacterioplankton: A comparison of universal 16S rRNA probes, autoradiography, and nucleoid staining
-
KARNER, M., AND J. A. FUHRMAN. 1997. Determination of active marine bacterioplankton: A comparison of universal 16S rRNA probes, autoradiography, and nucleoid staining. Appl. Environ. Microbiol. 63: 1208-1213.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 1208-1213
-
-
Karner, M.1
Fuhrman, J.A.2
-
21
-
-
0036207009
-
The ecology of Cytophaga-Flavobacteria in aquatic environments
-
KIRCHMAN, D. L. 2002. The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiol. Ecol. 39: 91-100.
-
(2002)
FEMS Microbiol. Ecol.
, vol.39
, pp. 91-100
-
-
Kirchman, D.L.1
-
22
-
-
0142198434
-
Fluxes of dissolved combined neutral sugars (polysaccharides) in the Delaware Estuary
-
_, AND N. B. BORCH. 2003. Fluxes of dissolved combined neutral sugars (polysaccharides) in the Delaware Estuary. Estuaries 26: 894-904.
-
(2003)
Estuaries
, vol.26
, pp. 894-904
-
-
Borch, N.B.1
-
23
-
-
4143075890
-
Changes in bacterial activity and community structure in response to dissolved organic matter in the Hudson River, New York
-
_, A. I. DITTEL, S. E. G. FINDLAY, AND D. FISCHER. 2004. Changes in bacterial activity and community structure in response to dissolved organic matter in the Hudson River, New York. Aquat. Microb. Ecol. 35: 243-257.
-
(2004)
Aquat. Microb. Ecol.
, vol.35
, pp. 243-257
-
-
Dittel, A.I.1
Findlay, S.E.G.2
Fischer, D.3
-
24
-
-
0033538863
-
Hydrolysis and mineralization of chitin in the Delaware Estuary
-
_, AND J. WHITE. 1999. Hydrolysis and mineralization of chitin in the Delaware Estuary. Aquat. Microb. Ecol. 18: 187-196.
-
(1999)
Aquat. Microb. Ecol.
, vol.18
, pp. 187-196
-
-
White, J.1
-
25
-
-
0242573334
-
Diversity and abundance of uncultured Cytophaga-like bacteria in the Delaware Estuary
-
_, L. Yu, AND M. T. COTTRELL. 2003. Diversity and abundance of uncultured Cytophaga-like bacteria in the Delaware Estuary. Appl. Environ. Microbiol. 69: 6587-6596.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 6587-6596
-
-
Yu, L.1
Cottrell, M.T.2
-
26
-
-
2542523843
-
ARB: A software environment for sequence data
-
LUDWIG, W., AND OTHERS. 2004. ARB: A software environment for sequence data. Nucleic Acids Res. 32: 1363-1371.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
-
27
-
-
0035175274
-
The RDP-II (Ribosomal Database Project)
-
MAIDAK, B. L., AND OTHERS. 2001. The RDP-II (Ribosomal Database Project). Nucleic Acids Res. 29: 173-174.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 173-174
-
-
Maidak, B.L.1
-
28
-
-
3242797571
-
Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic Ocean
-
MALMSTROM, R. R., R. P. KIENE, M. T. COTTRELL, AND D. L. KIRCHMAN. 2004. Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic Ocean. Appl. Environ. Microbiol. 70: 4129-4135.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 4129-4135
-
-
Malmstrom, R.R.1
Kiene, R.P.2
Cottrell, M.T.3
Kirchman, D.L.4
-
29
-
-
9344247522
-
Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum Cytophaga-Flavobacter-Bacteroides in the natural environment
-
UK
-
MANZ, W., R. AMANN, W. LUDWIG, M. VANCANNEYT, AND K. H. SCHLEIFER. 1996. Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum Cytophaga-Flavobacter-Bacteroides in the natural environment. Microbiology (UK) 142: 1097-1106.
-
(1996)
Microbiology
, vol.142
, pp. 1097-1106
-
-
Manz, W.1
Amann, R.2
Ludwig, W.3
Vancanneyt, M.4
Schleifer, K.H.5
-
30
-
-
0027068041
-
Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: Problems and solutions
-
_, M. WAGNER, AND K.-H. SCHLEIFER. 1992. Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: Problems and solutions. Syst. Appl. Microbiol. 15: 593-600.
-
(1992)
Syst. Appl. Microbiol.
, vol.15
, pp. 593-600
-
-
Wagner, M.1
Schleifer, K.-H.2
-
31
-
-
2542431561
-
The rate and pattern of cladogenesis in microbes
-
MARTIN, A. P., E. K. COSTELLO, A. F. MEYER, D. R. NEMERGUT, AND S. K. SCHMIDT. 2004. The rate and pattern of cladogenesis in microbes. Evolution 58: 946-955.
-
(2004)
Evolution
, vol.58
, pp. 946-955
-
-
Martin, A.P.1
Costello, E.K.2
Meyer, A.F.3
Nemergut, D.R.4
Schmidt, S.K.5
-
32
-
-
0037180794
-
SAR11 clade dominates ocean surface bacterioplankton communities
-
MORRIS, R. M., AND OTHERS. 2002. SAR11 clade dominates ocean surface bacterioplankton communities. Nature 420: 806-810.
-
(2002)
Nature
, vol.420
, pp. 806-810
-
-
Morris, R.M.1
-
33
-
-
10344242462
-
Microbial respiration and production in the Delaware Estuary
-
PREEN, K. E., AND D. L. KIRCHMAN. 2004. Microbial respiration and production in the Delaware Estuary. Aquat. Microb. Ecol. 37: 109-119.
-
(2004)
Aquat. Microb. Ecol.
, vol.37
, pp. 109-119
-
-
Preen, K.E.1
Kirchman, D.L.2
-
34
-
-
3042826875
-
Identification and phylogenetic sorting of bacterial lineages with universally conserved genes and proteins
-
SANTOS, S. R., AND H. OCHMAN. 2004. Identification and phylogenetic sorting of bacterial lineages with universally conserved genes and proteins. Environ. Microbiol. 6: 754-759.
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 754-759
-
-
Santos, S.R.1
Ochman, H.2
-
35
-
-
0035144101
-
Alpha- and beta-proteobacteria control the consumption and release of amino acids on lake snow aggregates
-
SCHWEITZER, B., I. HUBER, R. AMANN, W. LUDWIG, AND M. SIMON. 2001. Alpha- and beta-proteobacteria control the consumption and release of amino acids on lake snow aggregates. Appl. Environ. Microbiol. 67: 632-645.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 632-645
-
-
Schweitzer, B.1
Huber, I.2
Amann, R.3
Ludwig, W.4
Simon, M.5
-
36
-
-
84986786303
-
The chemistry of the Delaware Estuary: General considerations
-
SHARP, J. H., C. H. CULBERSON, AND T. M. CHURCH. 1982. The chemistry of the Delaware Estuary: General considerations. Limnol. Oceanogr. 27: 1015-1028.
-
(1982)
Limnol. Oceanogr.
, vol.27
, pp. 1015-1028
-
-
Sharp, J.H.1
Culberson, C.H.2
Church, T.M.3
-
37
-
-
0037434988
-
Comparing the effects of resource enrichment and grazing on a bacterioplankton community of a meso-eutrophic reservoir
-
SIMEK, K., AND OTHERS. 2003. Comparing the effects of resource enrichment and grazing on a bacterioplankton community of a meso-eutrophic reservoir. Aquat. Microb. Ecol. 31: 123-135.
-
(2003)
Aquat. Microb. Ecol.
, vol.31
, pp. 123-135
-
-
Simek, K.1
-
39
-
-
0036046654
-
Bacterial activity and genetic richness along an estuarine gradient (Rhone River plume, France)
-
TROUSSELLIER, M., AND OTHERS. 2002. Bacterial activity and genetic richness along an estuarine gradient (Rhone River plume, France). Aquat. Microb. Ecol. 28: 13-24.
-
(2002)
Aquat. Microb. Ecol.
, vol.28
, pp. 13-24
-
-
Troussellier, M.1
-
40
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
VENTER, J. C., AND OTHERS. 2004. Environmental genome shotgun sequencing of the Sargasso Sea. Science 304: 66-74.
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
-
41
-
-
1342289956
-
Actinobacterial 16S rRNA genes from freshwater habitats cluster in four distinct lineages
-
WARNECKE, F., R. AMANN, AND J. PERNTHALER. 2004. Actinobacterial 16S rRNA genes from freshwater habitats cluster in four distinct lineages. Environ. Microbiol. 6: 242-253.
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 242-253
-
-
Warnecke, F.1
Amann, R.2
Pernthaler, J.3
-
42
-
-
4944253045
-
Growth rate of the major phylogenetic bacterial groups in the Delaware Estuary
-
YOKOKAWA, T., T. NAGATA, M. T. COTTRELL, AND D. L. KIRCHMAN. 2004. Growth rate of the major phylogenetic bacterial groups in the Delaware Estuary. Limnol. Oceanogr. 49: 1620-1629.
-
(2004)
Limnol. Oceanogr.
, vol.49
, pp. 1620-1629
-
-
Yokokawa, T.1
Nagata, T.2
Cottrell, M.T.3
Kirchman, D.L.4
|