Contribution of major bacterial groups to bacterial biomass production along a salinity gradient in the South China Sea

Aquatic Microbial Ecology

Volumn 43, Issue 3, 2006, Pages 233-241

  Zhang, Yao ^a   Jiao, Nianzhi ^a   Cottrell, Matthew T ^b   Kirchman, David L ^b  

^a XIAMEN UNIVERSITY   (China)

^b UNIVERSITY OF DELAWARE   (United States)

Author keywords

Bacterial biomass production; Community; Cytophaga Flavobacterium; Fluorescent in situ hybridization; Leucine assimilation; Microautoradiography; Proteobacteria

Indexed keywords

ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); BETAPROTEOBACTERIA; CYTOPHAGA; FLAVOBACTERIUM; GAMMAPROTEOBACTERIA;

EID: 33747605786     PISSN: 09483055     EISSN: None     Source Type: Journal    
DOI: 10.3354/ame043233     Document Type: Article

References (43)

1. Amann RI, Krumholz L, Stahl DA (1990a) Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiololgy. J Bacteriol 172:762-770
2. Amann RI, Binder BJ, Olson RJ, Chisholm SW, Devereux R, Stahl DA (1990b) Combination of 16S ribosomal-RNA-targeted oligonucleotide probes with flow-cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 56:1919-1925
3. Bouvier TC, del Giorgio PA (2002) Compositional changes in free-living bacterial communities along a salinity gradient in two temperate estuaries. Limnol Oceanogr 47:453-470
4. Carman KR (1993) Microautoradiographic detection of microbial activity. In: Kemp PF, Sherr BF, Sherr EB, Cole JJ (eds) Handbook of methods in aquatic microbial ecology. Lewis Publishers, Boca Raton, FL, p 397-404
5. Cole JJ, Findlay S, Pace ML (1988) Bacterial production in fresh and saltwater ecosystems: a cross-system overview. Mar Ecol Prog Ser 43:1-10
6. Cotner JB, Ammerman JW, Peele ER, Bentzen E (1997) Phosphorus-limited bacterioplankton growth in the Sargasso Sea. Aquat Microb Ecol 13:141-149
7. Cottrell MT, Kirchman DL (2000) Natural assemblages of marine proteobacteria and members of the Cytophaga-flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter. Appl Environ Microbiol 66:1692-1697
8. Cottrell MT, Kirchman DL (2003) Contribution of major bacterial groups to bacterial biomass production (thymidine and leucine incorporation) in the Delaware estuary. Limnol Oceanogr 48:168-178
9. Cottrell MT, Kirchman DL (2004) Single-cell analysis of bacterial growth, cell size, and community structure in the Delaware estuary. Aquat Microb Ecol 34:139-149
10. Crump BC, Armbrust EV, Baross JA (1999) Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia River, its estuary, and the adjacent coastal ocean. Appl Environ Microbiol 65:3192-3204
11. del Giorgio PA, Bouvier TC (2002) Linking the physiologic and phylogenetic successions in free-living bacterial communities along an estuarine salinity gradient. Limnol Oceanogr 47:471-486
12. Delong EF, Wickham GS, Pace NR (1989) Phylogenetic strains: ribosomal RNA-based probes for the identification of single cells. Science 243:1360-1363
13. Delong EF, Franks DG, Alldredge AL (1993) Phylogenetic diversity of aggregate-attached vs. free-living bacterial communities along an estuarine salinity gradient. Limnol Oceanogr 47:471-486
14. Ducklow H (2000) Bacterial production and biomass in the oceans. In: Kirchman DL Microbial ecology of the oceans. Wiley-Liss Publishers, New York, p 85-120
15. Eiler A, Langenheder S, Bertilsson S, Tranvik LJ (2003) Heterotrophic bacterial growth efficiency and community structure at different natural organic carbon concentrations. Appl Environ Microbiol 69:3701-3709
16. Eilers H, Pernthaler J, Glöckner FO, Amann R (2000) Culturability and in situ abundance of pelagic bacteria from the North Sea. Appl Environ Microbiol 66:3044-3051
17. Fuhrman JA (2002) Community structure and function in prokaryotic marine plankton. Antonie Leeuwenhoek 81:521-527
18. Fuhrman JA, Azam F (1982) Thymidine incorporation as a measure of heterotrophic bacteriaoplankton production in marine surface waters - evaluation and field results. Mar Biol 66:109-120
19. Fuhrman JA, Suttle CA (1993) Viruses in marine planktonic systems. Oceanography 6:50-62
20. Giovannoni S, Rappé M (2000) Evolution, diversity, and molecular ecology of marine prokaryotes. In: Kirchman DL (ed) Microbial ecology of the oceans. Wiley-Liss Publishers, New York, p 47-84
21. Glöckner FO, Fuchs BM, Amann R (1999) Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Appl Environ Microbiol 65:3721-3726
22. Goericke R, Repeta DJ (1993) Chlorophylls a and b and divinyl chlorophylls a and b in the open subtropical North Atlantic Ocean. Mar Ecol Prog Ser 101:307-313
23. Holm-Hansen O, Lorenzen CJ, Holms RW, Strickland JDH (1965) Fluorometric determination of chlorophyll. J Cons Perm Int Explor Mer 30:3-15
24. Karner M, Fuhrman JA (1997) Determination of active marine bacterioplankton: a comparison of universal 16S rRNA probes, autoradiography, and nucleoid staining. Appl Environ Microbiol 63:1208-1213
25. Kirchman DL (2002) The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiol Ecol 39:91-100
26. Kirchman DL, K'ness E, Hodson R (1985) Leucine incorporation and its potential as a measure of protein synthesis by bacteria in natural waters. Appl Environ Microbiol 49:599-607
27. Kirchman DL, Dittel AI, Malmstrom RR, Cottrell MT (2005) Biogeography of major bacterial groups in the Delaware estuary. Limnol Oceanogr 50:1697-1706
28. Kirchman DL, Meon B, Cottrell MT, Hutchins DA, Weeks D, Bruland KW (2000) Carbon versus iron limitation of bacterial growth in the California upwelling regime. Limnol Oceanogr 45:1681-1688
29. Langenheder S, Kisand V, Lindström ES, Wikner J, Tranvik LJ (2004) Growth dynamics within bacterial communities in riverine and estuarine batch cultures. Aquat Microb Ecol 37:137-148
30. Lee N, Nielsen PH, Andreasen KH, Juretschko S, Nielsen JL, Schleifer KH, Wagner M (1999) Combination of fluorescent in situ hybridization and microautoradiography - a new tool for structure-function analyses in microbial ecol ogy. Appl Environ Microbiol 65:1289-1297
31. Manz W, Amann R, Ludwig W, Wagner M, Schleifer KH (1992) Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria - problems and solutions. Syst Appl Microbiol 15:593-600
32. Manz W, Amann R, Ludwig W, Vancanneyt M, Schleifer KH (1996) Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum Cytophaga-Flavobacter-Bacteroides in the natural environment. Microbiology 142:1097-1106
33. Ning X, Chai F, Xue H, Cai Y, Liu C, Shi J (2004) Physical-biological oceanographic coupling influencing phytoplankton and primary production in the South China Sea. J Geophys Res 109: C10005, doi: 10.1029/2004JC002365
34. Ouverney CC, Fuhrman JA (1999) Combined microautoradiography-16S rRNA probe technique for determination of radioisotope uptake by specific microbial cell types in situ. Appl Environ Microbiol 65:1746-1752
35. Pinhassi J, Berman T (2003) Differential growth response of colony-forming alpha- and gamma-Proteobacteria in dilution cultures and nutrient addition experiments from Lake Kinneret (Israel), the Eastern Mediterranean Sea, and the Gulf of Eilat. Appl Environ Microbiol 69:199-211
36. Rath J, Wu KY, Herndl GJ, Delong EF (1998) High phylogenetic diversity in a marine-snow-associated bacterial assemblage. Aquat Microb Ecol 14:261-269
37. Rogers AW (1979) Techniques of autoradiography, 3rd edn. Elsevier, Amsterdam
38. Simon M, Azam F (1989) Protein-content and protein-synthesis rates of planktonic marine-bacteria. Mar Ecol Prog Ser 51:201-213
39. Strom SL (2000) Bacterivory: interactions between bacteria and their grazers. In: Kirchman DL (ed) Microbial ecology of the oceans. Wiley-Liss, New York, p 351-386
40. Tabor PS, Neihof RA (1984) Direct determination of activities for microorganisms of Chesapeake Bay populations. Appl Environ Microbiol 48:1012-1019
41. Wommack KE, Colwell RR (2000) Virioplankton: viruses in aquatic ecosystems. Microbiol Mol Biol Rev 64:69-114
42. Yokokawa T, Nagata T, Cottrell MT, Kirchman DL (2004) Growth rate of the major phylogenetic bacterial groups in the Delaware estuary. Limnol Oceanogr 49:1620-1629
43. Zarda B, Hahn D, Chatzinotas A, Schonhuber W, Neef A, Amann RI, Zeyer J (1997) Analysis of bacterial community structure in bulk soil by in situ hybridization. Arch Microbiol 168:185-192