Quantitative mapping of bacterioplankton populations in seawater: Field tests across an upwelling plume in Monterey Bay

Aquatic Microbial Ecology

Volumn 24, Issue 2, 2001, Pages 117-127

  Suzuki, Marcelino T ^a   Preston, Christina M ^a   Chavez, Francisco P ^a   DeLong, Edward F ^a  

^a MONTEREY BAY AQUARIUM RESEARCH INSTITUTE   (United States)

Author keywords

Bacterioplankton diversity; Coastal upwelling

Indexed keywords

CYTOPHAGA; PROKARYOTA; ROSEOBACTER; SPHINGOBACTERIALES; SYNECHOCOCCUS;

EID: 0035972956     PISSN: 09483055     EISSN: None     Source Type: Journal    
DOI: 10.3354/ame024117     Document Type: Article

References (36)

1. Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea
2. Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage
3. Identification of nonpoint sources of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes
4. Phylogenetic analysis of a natural marine bacterioplankton population by rRNA gene cloning and sequencing
5. Basin-wide distributions of living carbon components and the inverted trophic pyramid of the central gyre of the North Atlantic Ocean, Summer 1993
6. Archaea in coastal marine environments
7. Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages
8. Visualization and enumeration of marine planktonic Archaea and Bacteria by using polyribonucleotide probes and fluorescent in situ hybridization
9. Culturability and in situ abundance of pelagic bacteria from the North Sea
10. Diversity and depth-specific distribution of SAR11 cluster rRNA genes from marine planktonic bacteria
11. Widespread Archaea and novel Bacteria from the deep sea as shown by 16S rRNA gene sequences
12. Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans
13. Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells
14. Genetic diversity in Sargasso Sea bacterioplankton
15. 16S rRNA genes reveal stratified open ocean bacterioplankton populations related to the green non-sulfur bacteria
16. An in situ hybridization protocol for detection and identification of planktonic bacteria
17. Numerical dominance of a group of marine bacteria in the alpha-subclass of the class Proteobacteria in coastal seawater
18. Bacterial community structure associated with a dimethylsulfoniopropionate-producing North Atlantic algal bloom
19. Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific oceans
20. Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization
21. A new version of the RDP (Ribosomal Database Project)
22. Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment
23. Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel
24. Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities
25. Phylogenetic diversity of marine coastal picoplankton 16S rRNA genes cloned from the continental shelf off Cape Hatteras, North Carolina
26. Phylogenetic diversity of ultraplankton plastid small-subunit rRNA genes recovered in environmental nucleic acid samples from the Pacific and Atlantic coasts of the United States
27. Dynamics of bacterial community composition and activity during a mesocosm diatom bloom
28. Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing
29. Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity
30. Effect of protistan bacterivory on coastal bacterioplankton diversity
31. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
32. Bacterial diversity among small-subunit rRNA gene clones and cellular isolates from the same seawater sample
33. Quantitative analysis of small-subunit rRNA genes in mixed microbial populations using 5′ nuclease assays
34. Direct estimates of bacterial numbers in seawater samples without incurring cell loss during cell storage