Abundance and distribution of planktonic Archaea and Bacteria in the waters west of the Antarctic Peninsula

Limnology and Oceanography

Volumn 48, Issue 5, 2003, Pages 1893-1902

  Church, Matthew J ^a,d   DeLong, Edward F ^b   Ducklow, Hugh W ^a   Karner, Markus B ^c   Preston, Christina M ^b   Karl, David M ^c  

^a VIRGINIA INSTITUTE OF MARINE SCIENCE   (United States)

^b MONTEREY BAY AQUARIUM RESEARCH INSTITUTE   (United States)

^c UNIVERSITY OF HAWAII   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ABUNDANCE; BACTERIUM; DEPTH; SPATIAL DISTRIBUTION;

ANTARCTIC PENINSULA; ANTARCTICA;

ARCHAEA; BACTERIA (MICROORGANISMS); PROKARYOTA; VISCUM; VISCUM ALBUM;

EID: 0141428760     PISSN: 00243590     EISSN: None     Source Type: Journal    
DOI: 10.4319/lo.2003.48.5.1893     Document Type: Article

References (45)

1. AMANN, R. I., L. KRUMHOLZ, AND D. A. STAHL. 1990. Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J. Bacteriol. 172: 762-770.
2. BARNES, S. M., C. F. DELWICHE, J. D. PALMER, AND N. R. PACE. 1996. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc. Natl. Acad. Sci. USA 93: 9188-9193.
3. BÉJÀ, O., AND OTHERS. 2002. Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces. Appl. Environ. Microbiol. 68: 335-345.
4. CONNON, S. A., AND S. J. GIOVANNONI. 2002. High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates. Appl. Environ. Microbiol. 68: 3878-3885.
5. DELONG, E. F. 1992. Archaea in coastal marine environments. Proc. Natl. Acad. Sci. USA 89: 5685-5689.
6. _, G. S. WICKHAM, AND N. R. PACE. 1989. Phylogenetic stains: Ribosomal RNA-based probes for the identification of single microbial cells. Science 243: 1360-1363.
7. _, K. Y. Wu, B. B. PREZELIN, AND R. V. M. JOVINE. 1994. High abundance of Archaea in marine picoplankton. Nature 371: 695-687.
8. _, L. L. KING, R. MASSANA, H. CITTONE, A. MURRAY, C. SCHLEPER, AND S. G. WAKEHAM. 1998. Diphytanyl ether lipids in nonthermophilic crenarchaeotes. Appl. Environ. Microbiol. 64: 1133-1138.
9. _, L. T. TAYLOR, T. L. MARSH, AND C. M. PRESTON. 1999. Visualization and enumeration of marine planktonic Archaea and Bacteria by using polyribonucleotide probes and fluorescent in situ hybridization. Appl. Environ. Microbiol. 65: 5554-5563.
10. FUHRMAN, J. A., AND A. A. DAVIS. 1997. Widespread Archaea and novel Bacteria from the deep sea as shown by 16s rRNA gene sequences. Mar. Ecol. Prog. Ser. 150: 275-280.
11. _, AND C. C. OUVERNEY. 1998. Marine microbial diversity studied via 16s rRNA sequences: Cloning results from coastal waters and counting of native Archaea with fluorescent singe cell probes. Aquat. Ecol. 32: 3-15.
12. _, K. MCCALLUM, AND A. A. DAVIS. 1992. Novel major archaebacterial group from marine plankton. Nature 356: 148-149.
13. GIOVANNONI, S. J., T. B. BRITSCHGI, C. L. MOYER, AND K. G. FIELD. 1990. Genetic diversity in Sargasso Sea bacterioplankton. Nature 345: 60-63.
14. GLÖCKNER, F. O., B. M. FUCHS, AND R. I. AMANN. 1999. Bacterioplankton compositions of lakes and oceans: A first comparison based on fluorescence in situ hybridization. Appl. Environ. Microbiol. 65: 3721-3726.
15. HOFMANN, E. E., AND J. M. KLINCK. 1998. Hydrography and circulation of the Antarctic continental shelf: 150°E to the Greenwich meridian, p. 997-1042. In A. R. Robinson and K. H. Brink [eds.], The Sea. Vol. 11. Wiley.
16. _, C. M. LASCARA, AND D. A. SMITH. 1996. Water mass distribution and circulation west of the Antarctic Peninsula and including Bransfield Strait. In R. Ross, E. E. Hofmann, and L. B. Quetin [eds.], Foundations for ecological research west of the Antarctic Peninsula. Antarctic Research Series, American Geophysical Union.
17. HOLM-HANSEN, O., AND B. G. MITCHELL. 1991. Spatial and temporal distribution of phytoplankton and primary production in the western Bransfield Strait region. Deep-Sea Res. 38: 961-980.
18. KARL, D. M., O. HOLM-HANSEN, G. T. TAYLOR, G. TIEN, AND D. F. BIRD. 1991. Microbial biomass and productivity in the western Bransfield Strait, Antarctica during the 1986-87 austral summer. Deep-Sea Res. II 38: 1029-1055.
19. _, J. R. CHRISTIAN, J. E DORE, AND R. M. LETELIER. 1996. Microbiological oceanography in the region west of the Antarctic Peninsula: Microbial dynamics, nitrogen cycle and carbon flux. In R. Ross, E. E. Hofmann, and L. B. Quetin [eds.], Foundations for ecological research west of the Antarctic Peninsula. Antarctic Research Series, American Geophysical Union.
20. KARNER, M. B., E. F. DELONG, AND D. M. KARL. 2001. Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409: 507-510.
21. LÓPEZ-GARCÍA, P., A. LÓPEZ-LÓPEZ, D. MOREIRA, AND F. RODRÍGUEZ-VALERA. 2001a. Diversity of free-living prokaryotes from a deep-sea site at the Antarctic Polar Front. FEMS Microbiol. Ecol. 36: 193-202.
22. _, D. MOREIRA, A. LÓPEZ-LÓPEZ, AND F. RODRÍ GUEZ-VALERA. 2001b. A novel haloarchaeal-related lineage is widely distributed in deep oceanic regions. Environ. Microbiol. 3: 72-78.
23. _, F. RODRÍGUES-VALERA, C. PEDRÓS-ALIÓ, AND D. MOREIRA. 2001c. Unexpected diversity of small eukaryotes in deep-sea Antarctic plankton. Nature 409: 603-607.
24. MASSANA, R., A. E. MURRAY, C. M. PRESTON, AND E. F. DELONG. 1997. Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel. Appl. Environ. Microbiol. 63: 50-56.
25. _, L. T. TAYLOR, A. E. MURRAY, K. Y. WU, W. H. JEFFREY, AND E. F. DELONG. 1998. Vertical distribution and temporal variation of marine planktonic Archaea in the Gerlache Strait, Antarctica, during early spring. Limnol. Oceanogr. 43: 607-617.
26. _, E. F. DELONG, AND C. PEDRÓS-ALIÓ. 2000. A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces. Appl. Environ. Microbiol. 66: 1777-1787.
27. MOYER, C. L., J. M. TIEDJE, F. C. DOBBS, AND D. M. KARL. 1998. Diversity of deep-sea hydrothermal vent Archaea from Loihi Seamount, Hawaii. Deep-Sea Res. II 45: 303-317.
28. MURRAY, A. E., AND OTHERS. 1998. Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island, Antarctica. Appl. Environ. Microbiol. 64: 2585-2595.
29. _, AND OTHERS. 1999a. A time series assessment of planktonic archaeal variability in the Santa Barbara Channel. Aquat. Microb. Ecol. 20: 129-145.
30. _, K. WU, C. MOYER, D. M. KARL, AND E. F. DELONG. 1999b. Evidence for circumpolar distribution of planktonic Archaea in the Southern Ocean. Aquat. Microb. Ecol. 18: 263-273.
31. NILLER, P. P., A. AMOS, AND J. H. HU. 1991. Water masses and 200 m relative geostrophic circulation in the western Bransfield Strait region. Deep-Sea Res. 38: 943-959.
32. OLSEN, G. J., D. J. LANE, S. J. GIOVANNONI, N. R. PACE, AND D. A. STAHL. 1986. Microbial ecology and evolution: A ribosomal RNA approach. Annu. Rev. Microbiol. 40: 337-365.
33. OUVERNEY, C. C., AND J. A. FUHRMAN. 2001. Marine planktonic Archaea take up amino acids. Appl. Environ. Microbiol. 66: 4829-4833.
34. 14C analysis. Geochim. Cosmochim. Acta 65: 3123-3137.
35. PERNTHALER, A., C. M. PRESTON, J. PERNTHALER, E. F. DELONG, AND R. AMANN. 2002. A comparison of fluorescently labeled oligonucleotide and polynucleotide probes for the detection of pelagic marine Bacteria and Archaea. Appl. Environ. Microbiol. 68: 661-667.
36. PRESTON, C. M., K. Y. WU, T. F. MOLINSKI, AND E. F. DELONG. 1996. A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov. Proc. Natl. Acad. Sci. USA 93: 6241-6246.
37. RAPPÉ, M. S., S. A. CONNON, K. L. VERGIN, AND S. J. GIOVANNONI. 2002. Cultivation of the ubiquitous SAR 11 marine bacterioplankton clade. Nature 418: 630-633.
38. SCHLITZER, R. 2002. Ocean data view. Internet site http://www. awi-bremerhaven.de/GEO/ODV. Accessed 2002.
39. SIMON, M., F. O. GLÖCKNER, AND R. AMANN. 1999. Different community structure and temperature optima of heterotrophic picoplankton in various regions of the Southern Ocean. Aquat. Microb. Ecol. 18: 275-284.
40. SMITH, D. A., E. E. HOFMANN, J. M. KLINCK, AND C. M. LASCARA. 1999. Hydrography and circulation of the West Antarctic Peninsula Continental Shelf. Deep-Sea Res. I 46: 925-949.
41. SMITH, R. C., AND OTHERS. 1995. The Palmer LTER: A long-term ecological research program at Palmer Station, Antarctica. Oceanography 8: 77-86.
42. STAMMERJOHN, S. E., AND R. C. SMITH. 1996. Spatial and temporal variability of Western Antarctic Peninsula sea ice coverage, In R. Ross, E. E. Hofmann, and L. B. Quetin [eds.], Foundations for ecological research west of the Antarctic Peninsula. Antarctic Research Series, American Geophysical Union.
43. TREBESIUS, K., R. AMANN, W. LUDWIG, K. MÜHLEGGER, AND K. H. SCHEIFER. 1994. Identification of whole fixes bacterial cells with nonradioactive 23s rRNA-targeted polynucleotide probes. Appl. Environ. Microbiol. 60: 3228-3235.
44. WOESE, C. R. 1987. Bacterial evolution. Microbiol. Rev. 51: 221-271.
45. WUCHTER, C., S. SCHOUTEN, H. T. S. BOSCHKER, AND J. S. S. DAMSTÉ. 2003. Bicarbonate uptake by marine Crenarchaeota. FEMS Microbiol. Lett. 219: 203-207.