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Volumn 277, Issue 5, 2010, Pages 1245-1259

Physiological truncation and domain organization of a novel uracil-DNA-degrading factor

Author keywords

Cell death; DNA; Nuclease; Protein structural modeling; Uracil

Indexed keywords

DNA; PROTEIN; UNCLASSIFIED DRUG; URACIL; URACIL DNA DEGRADING FACTOR;

EID: 76349103025     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/j.1742-4658.2009.07556.x     Document Type: Article
Times cited : (5)

References (49)
  • 1
    • 0027278557 scopus 로고
    • Instability and decay of the primary structure of DNA
    • Lindahl T (1993) Instability and decay of the primary structure of DNA. Nature 362, 709 715.
    • (1993) Nature , vol.362 , pp. 709-715
    • Lindahl, T.1
  • 2
    • 0037115911 scopus 로고    scopus 로고
    • Uracil in DNA - Occurrence, consequences and repair
    • Krokan HE, Drablos F Slupphaug G (2002) Uracil in DNA - occurrence, consequences and repair. Oncogene 21, 8935 8948.
    • (2002) Oncogene , vol.21 , pp. 8935-8948
    • Krokan, H.E.1    Drablos, F.2    Slupphaug, G.3
  • 3
    • 19144373027 scopus 로고    scopus 로고
    • The problem with pyrimidines
    • Pearl LH Savva R (1996) The problem with pyrimidines. Nat Struct Biol 3, 485 487.
    • (1996) Nat Struct Biol , vol.3 , pp. 485-487
    • Pearl, L.H.1    Savva, R.2
  • 4
    • 0023949768 scopus 로고
    • Purification and characterization of porcine liver DNA polymerase gamma: Utilization of dUTP and dTTP during in vitro DNA synthesis
    • Mosbaugh DW (1988) Purification and characterization of porcine liver DNA polymerase gamma: utilization of dUTP and dTTP during in vitro DNA synthesis. Nucleic Acids Res 16, 5645 5659.
    • (1988) Nucleic Acids Res , vol.16 , pp. 5645-5659
    • Mosbaugh, D.W.1
  • 5
    • 61849128423 scopus 로고    scopus 로고
    • Keeping uracil out of DNA: Physiological role, structure and catalytic mechanism of dUTPases
    • Vertessy BG Toth J (2008) Keeping uracil out of DNA: physiological role, structure and catalytic mechanism of dUTPases. Acc Chem Res 42, 97 106.
    • (2008) Acc Chem Res , vol.42 , pp. 97-106
    • Vertessy, B.G.1    Toth, J.2
  • 6
    • 0030861915 scopus 로고    scopus 로고
    • DNA glycosylases in the base excision repair of DNA
    • Krokan HE, Standal R Slupphaug G (1997) DNA glycosylases in the base excision repair of DNA. Biochem J 325, 1 16.
    • (1997) Biochem J , vol.325 , pp. 1-16
    • Krokan, H.E.1    Standal, R.2    Slupphaug, G.3
  • 8
    • 18644363009 scopus 로고    scopus 로고
    • HUNG2 is the major repair enzyme for removal of uracil from U:A matches, U:G mismatches, and U in single-stranded DNA, with hSMUG1 as a broad specificity backup
    • Kavli B, Sundheim O, Akbari M, Otterlei M, Nilsen H, Skorpen F, Aas PA, Hagen L, Krokan HE Slupphaug G (2002) hUNG2 is the major repair enzyme for removal of uracil from U:A matches, U:G mismatches, and U in single-stranded DNA, with hSMUG1 as a broad specificity backup. J Biol Chem 277, 39926 39936.
    • (2002) J Biol Chem , vol.277 , pp. 39926-39936
    • Kavli, B.1    Sundheim, O.2    Akbari, M.3    Otterlei, M.4    Nilsen, H.5    Skorpen, F.6    Aas, P.A.7    Hagen, L.8    Krokan, H.E.9    Slupphaug, G.10
  • 9
    • 33750935665 scopus 로고    scopus 로고
    • Quantitative determination of uracil residues in Escherichia coli DNA: Contribution of ung, dug, and dut genes to uracil avoidance
    • Lari SU, Chen CY, Vertessy BG, Morre J Bennett SE (2006) Quantitative determination of uracil residues in Escherichia coli DNA: contribution of ung, dug, and dut genes to uracil avoidance. DNA Repair (Amst) 5, 1407 1420.
    • (2006) DNA Repair (Amst) , vol.5 , pp. 1407-1420
    • Lari, S.U.1    Chen, C.Y.2    Vertessy, B.G.3    Morre, J.4    Bennett, S.E.5
  • 11
    • 22344453737 scopus 로고    scopus 로고
    • B cells from hyper-IgM patients carrying UNG mutations lack ability to remove uracil from ssDNA and have elevated genomic uracil
    • Kavli B, Andersen S, Otterlei M, Liabakk NB, Imai K, Fischer A, Durandy A, Krokan HE Slupphaug G (2005) B cells from hyper-IgM patients carrying UNG mutations lack ability to remove uracil from ssDNA and have elevated genomic uracil. J Exp Med 201, 2011 2021.
    • (2005) J Exp Med , vol.201 , pp. 2011-2021
    • Kavli, B.1    Andersen, S.2    Otterlei, M.3    Liabakk, N.B.4    Imai, K.5    Fischer, A.6    Durandy, A.7    Krokan, H.E.8    Slupphaug, G.9
  • 12
    • 0026711129 scopus 로고
    • Multiple mutant of Escherichia coli synthesizing virtually thymineless DNA during limited growth
    • el-Hajj HH, Wang L Weiss B (1992) Multiple mutant of Escherichia coli synthesizing virtually thymineless DNA during limited growth. J Bacteriol 174, 4450 4456.
    • (1992) J Bacteriol , vol.174 , pp. 4450-4456
    • El-Hajj, H.H.1    Wang, L.2    Weiss, B.3
  • 13
    • 3242791849 scopus 로고    scopus 로고
    • The Drosophila melanogaster genome sequencing and annotation projects: A status report
    • Drysdale R (2003) The Drosophila melanogaster genome sequencing and annotation projects: a status report. Brief Funct Genomic Proteomic 2, 128 134.
    • (2003) Brief Funct Genomic Proteomic , vol.2 , pp. 128-134
    • Drysdale, R.1
  • 16
    • 0029240184 scopus 로고
    • Why do pupating insects lack an activity for the repair of uracil-containing DNA? One explanation involves apoptosis
    • Deutsch WA (1995) Why do pupating insects lack an activity for the repair of uracil-containing DNA? One explanation involves apoptosis Insect Mol Biol 4, 1 5.
    • (1995) Insect Mol Biol , vol.4 , pp. 1-5
    • Deutsch, W.A.1
  • 17
    • 0026724896 scopus 로고
    • The presence of uracil-DNA glycosylase in insects is dependent upon developmental complexity
    • Dudley B, Hammond A Deutsch WA (1992) The presence of uracil-DNA glycosylase in insects is dependent upon developmental complexity. J Biol Chem 267, 11964 11967.
    • (1992) J Biol Chem , vol.267 , pp. 11964-11967
    • Dudley, B.1    Hammond, A.2    Deutsch, W.A.3
  • 18
    • 0034576553 scopus 로고    scopus 로고
    • The alpha/beta fold uracil DNA glycosylases: A common origin with diverse fates
    • RESEARCH0007, doi:.
    • Aravind L Koonin EV (2000) The alpha/beta fold uracil DNA glycosylases: a common origin with diverse fates. Genome Biol 1, RESEARCH0007, doi:.
    • (2000) Genome Biol , vol.1
    • Aravind, L.1    Koonin, E.V.2
  • 20
    • 0004214986 scopus 로고
    • Springer-Verlag. Berlin-Heidelberg-New York.
    • Keil B (1992) Specificity of Proteolysis. Springer-Verlag, Berlin-Heidelberg-New York.
    • (1992) Specificity of Proteolysis.
    • Keil, B.1
  • 21
    • 0017637022 scopus 로고
    • Cleavage at Asn-Gly bonds with hydroxylamine
    • Bornstein P Balian G (1977) Cleavage at Asn-Gly bonds with hydroxylamine. Methods Enzymol 47, 132 145.
    • (1977) Methods Enzymol , vol.47 , pp. 132-145
    • Bornstein, P.1    Balian, G.2
  • 22
    • 24044538903 scopus 로고    scopus 로고
    • IUPred: Web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
    • Dosztanyi Z, Csizmok V, Tompa P Simon I (2005) IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. Bioinformatics 21, 3433 3434.
    • (2005) Bioinformatics , vol.21 , pp. 3433-3434
    • Dosztanyi, Z.1    Csizmok, V.2    Tompa, P.3    Simon, I.4
  • 23
    • 20744437001 scopus 로고    scopus 로고
    • RONN: The bio-basis function neural network technique applied to the detection of natively disordered regions in proteins
    • Yang ZR, Thomson R, McNeil P Esnouf RM (2005) RONN: the bio-basis function neural network technique applied to the detection of natively disordered regions in proteins. Bioinformatics 21, 3369 3376.
    • (2005) Bioinformatics , vol.21 , pp. 3369-3376
    • Yang, Z.R.1    Thomson, R.2    McNeil, P.3    Esnouf, R.M.4
  • 24
    • 1542358787 scopus 로고    scopus 로고
    • Prediction and functional analysis of native disorder in proteins from the three kingdoms of life
    • Ward JJ, Sodhi JS, McGuffin LJ, Buxton BF Jones DT (2004) Prediction and functional analysis of native disorder in proteins from the three kingdoms of life. J Mol Biol 337, 635 645.
    • (2004) J Mol Biol , vol.337 , pp. 635-645
    • Ward, J.J.1    Sodhi, J.S.2    McGuffin, L.J.3    Buxton, B.F.4    Jones, D.T.5
  • 25
    • 0036154258 scopus 로고    scopus 로고
    • Size-distribution analysis of proteins by analytical ultracentrifugation: Strategies and application to model systems
    • Schuck P, Perugini MA, Gonzales NR, Howlett GJ Schubert D (2002) Size-distribution analysis of proteins by analytical ultracentrifugation: strategies and application to model systems. Biophys J 82, 1096 1111.
    • (2002) Biophys J , vol.82 , pp. 1096-1111
    • Schuck, P.1    Perugini, M.A.2    Gonzales, N.R.3    Howlett, G.J.4    Schubert, D.5
  • 26
    • 0242362160 scopus 로고    scopus 로고
    • A 'FRankenstein's monster' approach to comparative modeling: Merging the finest fragments of fold-recognition models and iterative model refinement aided by 3D structure evaluation
    • Kosinski J, Cymerman IA, Feder M, Kurowski MA, Sasin JM Bujnicki JM (2003) A 'FRankenstein's monster' approach to comparative modeling: merging the finest fragments of fold-recognition models and iterative model refinement aided by 3D structure evaluation. Proteins 53 (Suppl 6 369 379.
    • (2003) Proteins , vol.53 , Issue.SUPPL. 6 , pp. 369-379
    • Kosinski, J.1    Cymerman, I.A.2    Feder, M.3    Kurowski, M.A.4    Sasin, J.M.5    Bujnicki, J.M.6
  • 28
    • 0242299169 scopus 로고    scopus 로고
    • Automatic consensus-based fold recognition using Pcons, ProQ, and Pmodeller
    • Wallner B, Fang H Elofsson A (2003) Automatic consensus-based fold recognition using Pcons, ProQ, and Pmodeller. Proteins 53 (Suppl 6 534 541.
    • (2003) Proteins , vol.53 , Issue.SUPPL. 6 , pp. 534-541
    • Wallner, B.1    Fang, H.2    Elofsson, A.3
  • 30
    • 45849096536 scopus 로고    scopus 로고
    • Protein secondary structure analyses from circular dichroism spectroscopy: Methods and reference databases
    • Whitmore L Wallace BA (2008) Protein secondary structure analyses from circular dichroism spectroscopy: methods and reference databases. Biopolymers 89, 392 400.
    • (2008) Biopolymers , vol.89 , pp. 392-400
    • Whitmore, L.1    Wallace, B.A.2
  • 31
    • 0027190754 scopus 로고
    • Evaluation of secondary structure of proteins from UV circular dichroism spectra using an unsupervised learning neural network
    • Andrade MA, Chacon P, Merelo JJ Moran F (1993) Evaluation of secondary structure of proteins from UV circular dichroism spectra using an unsupervised learning neural network. Protein Eng 6, 383 390.
    • (1993) Protein Eng , vol.6 , pp. 383-390
    • Andrade, M.A.1    Chacon, P.2    Merelo, J.J.3    Moran, F.4
  • 32
    • 0027190626 scopus 로고
    • An interactive graphic program for calculating the secondary structure content of proteins from circular dichroism spectrum
    • Deleage G Geourjon C (1993) An interactive graphic program for calculating the secondary structure content of proteins from circular dichroism spectrum. Comput Appl Biosci 9, 197 199.
    • (1993) Comput Appl Biosci , vol.9 , pp. 197-199
    • Deleage, G.1    Geourjon, C.2
  • 33
    • 0020478878 scopus 로고
    • A new pathway expressed during a distinct stage of Drosophila development for the removal of dUMP residues in DNA
    • Deutsch WA Spiering AL (1982) A new pathway expressed during a distinct stage of Drosophila development for the removal of dUMP residues in DNA. J Biol Chem 257, 3366 3368.
    • (1982) J Biol Chem , vol.257 , pp. 3366-3368
    • Deutsch, W.A.1    Spiering, A.L.2
  • 34
    • 0023635995 scopus 로고
    • Enzymatic studies of DNA repair in Drosophila melanogaster
    • Deutsch WA (1987) Enzymatic studies of DNA repair in Drosophila melanogaster. Mutat Res 184, 209 215.
    • (1987) Mutat Res , vol.184 , pp. 209-215
    • Deutsch, W.A.1
  • 35
    • 0024970785 scopus 로고
    • Uracil-DNA glycosylase in insects. Drosophila and the locust
    • Morgan AR Chlebek J (1989) Uracil-DNA glycosylase in insects. Drosophila and the locust. J Biol Chem 264, 9911 9914.
    • (1989) J Biol Chem , vol.264 , pp. 9911-9914
    • Morgan, A.R.1    Chlebek, J.2
  • 36
    • 0021005315 scopus 로고
    • Repair of alkylated DNA: Drosophila have DNA methyltransferases but not DNA glycosylases
    • Green DA Deutsch WA (1983) Repair of alkylated DNA: Drosophila have DNA methyltransferases but not DNA glycosylases. Mol Gen Genet 192, 322 325.
    • (1983) Mol Gen Genet , vol.192 , pp. 322-325
    • Green, D.A.1    Deutsch, W.A.2
  • 37
    • 0022650621 scopus 로고
    • A DNA glycosylase for oxidized thymine residues in Drosophila melanogaster
    • Breimer LH (1986) A DNA glycosylase for oxidized thymine residues in Drosophila melanogaster. Biochem Biophys Res Commun 134, 201 204.
    • (1986) Biochem Biophys Res Commun , vol.134 , pp. 201-204
    • Breimer, L.H.1
  • 42
    • 2342420635 scopus 로고    scopus 로고
    • Multidimensional NMR identifies the conformational shift essential for catalytic competence in the 60-kDa Drosophila melanogaster dUTPase trimer
    • Dubrovay Z, Gaspari Z, Hunyadi-Gulyas E, Medzihradszky KF, Perczel A Vertessy BG (2004) Multidimensional NMR identifies the conformational shift essential for catalytic competence in the 60-kDa Drosophila melanogaster dUTPase trimer. J Biol Chem 279, 17945 17950.
    • (2004) J Biol Chem , vol.279 , pp. 17945-17950
    • Dubrovay, Z.1    Gaspari, Z.2    Hunyadi-Gulyas, E.3    Medzihradszky, K.F.4    Perczel, A.5    Vertessy, B.G.6
  • 43
    • 0034009520 scopus 로고    scopus 로고
    • Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling
    • Schuck P (2000) Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling. Biophys J 78, 1606 1619.
    • (2000) Biophys J , vol.78 , pp. 1606-1619
    • Schuck, P.1
  • 44
    • 1842481270 scopus 로고    scopus 로고
    • Analysis of heterogeneous interactions
    • Cole JL (2004) Analysis of heterogeneous interactions. Methods Enzymol 384, 212 232.
    • (2004) Methods Enzymol , vol.384 , pp. 212-232
    • Cole, J.L.1


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