-
1
-
-
0020648847
-
The role of mobility in the substrate binding and catalytic machinery of enzymes
-
Alber,T. et al. (1983) The role of mobility in the substrate binding and catalytic machinery of enzymes. Ciba Found. Symp., 93, 4-24.
-
(1983)
Ciba Found. Symp.
, vol.93
, pp. 4-24
-
-
Alber, T.1
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul,S.F. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
-
3
-
-
0028289467
-
Issues in searching molecular sequence databases
-
Altschul,S.F. et al. (1994) Issues in searching molecular sequence databases. Nat. Genet., 6, 119-129.
-
(1994)
Nat. Genet.
, vol.6
, pp. 119-129
-
-
Altschul, S.F.1
-
4
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul,S.F. et al. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
-
5
-
-
0015859467
-
Principles that govern the folding of protein chains
-
Anfinsen,C.B. (1973) Principles that govern the folding of protein chains. Science, 181, 223-230.
-
(1973)
Science
, vol.181
, pp. 223-230
-
-
Anfinsen, C.B.1
-
6
-
-
0036435882
-
Analysis of catalytic residues in enzyme active sites
-
Bartlett,G.J. et al. (2002) Analysis of catalytic residues in enzyme active sites. J. Mol. Biol., 324, 105-121.
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 105-121
-
-
Bartlett, G.J.1
-
7
-
-
0033954256
-
The Protein Data Bank
-
Berman,H.M. et al. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
-
8
-
-
0037246807
-
E-MSD: The European Bioinformatics Institute Macromolecular Structure Database
-
Boutselakis,H. et al. (2003) E-MSD: The European Bioinformatics Institute Macromolecular Structure Database. Nucleic Acids Res., 31, 458-462.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 458-462
-
-
Boutselakis, H.1
-
9
-
-
0022419375
-
Aromatic-aromatic interaction: A mechanism of protein structure stabilization
-
Burley,S.K. and Petsko,G.A. (1985) Aromatic-aromatic interaction: A mechanism of protein structure stabilization. Science, 229, 23-28.
-
(1985)
Science
, vol.229
, pp. 23-28
-
-
Burley, S.K.1
Petsko, G.A.2
-
10
-
-
18744405418
-
Prediction of unfolded segments in a protein sequence based on amino acid composition
-
Coeytaux,K. and Poupon,A. (2005) Prediction of unfolded segments in a protein sequence based on amino acid composition. Bioinformatics, 21, 1891-1900.
-
(2005)
Bioinformatics
, vol.21
, pp. 1891-1900
-
-
Coeytaux, K.1
Poupon, A.2
-
12
-
-
0028385080
-
Minimal consistent set (MCS) identification for optimal nearest neighbour decision systems design
-
Dasarathy,B.V. (1994) Minimal consistent set (MCS) identification for optimal nearest neighbour decision systems design. IEEE Trans. Systems Man. Cybernetics, 24, 511-517.
-
(1994)
IEEE Trans. Systems Man. Cybernetics
, vol.24
, pp. 511-517
-
-
Dasarathy, B.V.1
-
13
-
-
0000228203
-
A model of evolutionary change in proteins
-
Dayhoff,M.O. (ed.), National Biomedical Research Foundation, Washington DC
-
Dayhoff,M.O., Schwartz,R.M. and Orcutt,B.C. (1978) A model of evolutionary change in proteins. In Dayhoff,M.O. (ed.), Atlas of Protein Sequence and Structure Volume 5. National Biomedical Research Foundation, Washington DC, pp. 345-358.
-
(1978)
Atlas of Protein Sequence and Structure
, vol.5
, pp. 345-358
-
-
Dayhoff, M.O.1
Schwartz, R.M.2
Orcutt, B.C.3
-
14
-
-
0003922190
-
-
2nd edn. Wiley-Interscience, Hoboken, NJ
-
Duda,R.O., Hart,P.E. and Stork,D.G. (2002) Pattern Classification, 2nd edn. Wiley-Interscience, Hoboken, NJ.
-
(2002)
Pattern Classification
-
-
Duda, R.O.1
Hart, P.E.2
Stork, D.G.3
-
16
-
-
0025825895
-
Modular structure of transcription factors: Implications for gene regulation
-
Frankel,A.D. and Kim,P.S. (1991) Modular structure of transcription factors: Implications for gene regulation. Cell, 65, 717-719.
-
(1991)
Cell
, vol.65
, pp. 717-719
-
-
Frankel, A.D.1
Kim, P.S.2
-
17
-
-
0003380323
-
Predicting disordered regions for amino acid sequence: Common themes despite differing structural characterization
-
Garner,E. et al. (1998) Predicting disordered regions for amino acid sequence: Common themes despite differing structural characterization. Genome Inform. Ser. Workshop Genome Inform., 9, 201-213.
-
(1998)
Genome Inform. Ser. Workshop Genome Inform.
, vol.9
, pp. 201-213
-
-
Garner, E.1
-
18
-
-
0002582635
-
Predicting binding regions within disordered proteins
-
Garner,E. et al. (1999) Predicting binding regions within disordered proteins. Genome Inform. Ser. Workshop Genome Inform., 10, 41-50.
-
(1999)
Genome Inform. Ser. Workshop Genome Inform.
, vol.10
, pp. 41-50
-
-
Garner, E.1
-
19
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
Henikoff,S. and Henikoff,J.G. (1992) Amino acid substitution matrices from protein blocks. Proc. Natl Acad. Sci. USA, 89, 10915-10919.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
20
-
-
0018793852
-
Conformational flexibility in protein molecules
-
Huber,R. (1979) Conformational flexibility in protein molecules. Nature, 280, 538-539.
-
(1979)
Nature
, vol.280
, pp. 538-539
-
-
Huber, R.1
-
21
-
-
0028848524
-
Crystal structures of human calcineurin and the human FKBP12-FK506-calcineurin complex
-
Kissinger,C.R. et al. (1995) Crystal structures of human calcineurin and the human FKBP12-FK506-calcineurin complex. Nature 378, 641-644.
-
(1995)
Nature
, vol.378
, pp. 641-644
-
-
Kissinger, C.R.1
-
22
-
-
0035072551
-
Clustering of highly homologous sequences to reduce the size of large protein databases
-
Li,W. et al. (2001) Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics, 17 282-283.
-
(2001)
Bioinformatics
, vol.17
, pp. 282-283
-
-
Li, W.1
-
23
-
-
0036169928
-
Tolerating some redundancy significantly speeds up clustering of large protein databases
-
Li,W. et al. (2002) Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics, 18, 77-82.
-
(2002)
Bioinformatics
, vol.18
, pp. 77-82
-
-
Li, W.1
-
24
-
-
0001913048
-
Predicting protein disorder for N-, C-, and internal regions
-
Li,X. et al. (1999) Predicting protein disorder for N-, C-, and internal regions. Genome Inform. Ser. Workshop Genome Inform., 10, 30-40.
-
(1999)
Genome Inform. Ser. Workshop Genome Inform.
, vol.10
, pp. 30-40
-
-
Li, X.1
-
25
-
-
0034578463
-
Comparing predictors of disordered protein
-
Li,X. et al. (2000) Comparing predictors of disordered protein. Genome Inform. Ser. Workshop Genome Inform., 11, 172-184.
-
(2000)
Genome Inform. Ser. Workshop Genome Inform.
, vol.11
, pp. 172-184
-
-
Li, X.1
-
26
-
-
0242458482
-
Protein disorder prediction: Implications for structural proteomics
-
Linding,R. et al. (2003a) Protein disorder prediction: implications for structural proteomics. Structure (Camb.), 11 1453-1459.
-
(2003)
Structure (Camb.)
, vol.11
, pp. 1453-1459
-
-
Linding, R.1
-
27
-
-
0042622240
-
GlobPlot: Exploring protein sequences for globularity and disorder
-
Linding,R. et al. (2003b) GlobPlot: Exploring protein sequences for globularity and disorder. Nucleic Acids Res., 31, 3701-3708.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3701-3708
-
-
Linding, R.1
-
28
-
-
0016772212
-
Comparison of the predicted and observed secondary structure of T4 phage lysozyme
-
Matthews,B.W. (1975) Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochim. Biophys. Acta, 405, 442-451.
-
(1975)
Biochim. Biophys. Acta
, vol.405
, pp. 442-451
-
-
Matthews, B.W.1
-
29
-
-
17844399803
-
Addressing the intrinsic disorder bottleneck in structural proteomics
-
Oldfield,C.J. et al. (2005) Addressing the intrinsic disorder bottleneck in structural proteomics. Proteins, 59, 444-453.
-
(2005)
Proteins
, vol.59
, pp. 444-453
-
-
Oldfield, C.J.1
-
30
-
-
0043130638
-
Prediction of boundaries between intrinsically ordered and disordered protein regions
-
Radivojac,P. et al. (2003) Prediction of boundaries between intrinsically ordered and disordered protein regions. Pac. Symp. Biocomput., 216-227.
-
(2003)
Pac. Symp. Biocomput.
, pp. 216-227
-
-
Radivojac, P.1
-
31
-
-
0347364621
-
Protein flexibility and intrinsic disorder
-
Radivojac,P. et al. (2004) Protein flexibility and intrinsic disorder. Protein Sci., 13, 71-80.
-
(2004)
Protein Sci.
, vol.13
, pp. 71-80
-
-
Radivojac, P.1
-
32
-
-
0030691703
-
Identifying disordered regions in proteins from amino acid sequence
-
Romero,P. et al. (1997) Identifying disordered regions in proteins from amino acid sequence. Proc. IEEE Int. Conf. Neural Networks, 1, 90-95.
-
(1997)
Proc. IEEE Int. Conf. Neural Networks
, vol.1
, pp. 90-95
-
-
Romero, P.1
-
33
-
-
0034458146
-
Intelligent data analysis for protein disorder prediction
-
Romero,P. et al. (2000) Intelligent data analysis for protein disorder prediction. Artif. Intell. Rev., 14, 447-484.
-
(2000)
Artif. Intell. Rev.
, vol.14
, pp. 447-484
-
-
Romero, P.1
-
34
-
-
0002086583
-
Nucleotide binding proteins
-
Balaban,M. (ed.), Elsevier/North-Holland Biomedical Press, Amsterdam
-
Schulz,G.E. (1979) Nucleotide binding proteins. In Balaban,M. (ed.), Molecular Mechanism of Biological Recognition. Elsevier/North-Holland Biomedical Press, Amsterdam, pp. 79-94.
-
(1979)
Molecular Mechanism of Biological Recognition
, pp. 79-94
-
-
Schulz, G.E.1
-
35
-
-
24044459339
-
Prediction of natively disordered regions in proteins using a bio-basis function neural network
-
Thomson,R. and Esnouf,R. (2004) Prediction of natively disordered regions in proteins using a bio-basis function neural network. Lecture Notes in Computer Science, 3177, 108-116.
-
(2004)
Lecture Notes in Computer Science
, vol.3177
, pp. 108-116
-
-
Thomson, R.1
Esnouf, R.2
-
36
-
-
0141506120
-
Characterizing proteolytic cleavage site activity using bio-basis function neural networks
-
Thomson,R. et al. (2003) Characterizing proteolytic cleavage site activity using bio-basis function neural networks. Bioinformatics, 19, 1741-1747.
-
(2003)
Bioinformatics
, vol.19
, pp. 1741-1747
-
-
Thomson, R.1
-
37
-
-
0034669882
-
Why are 'natively unfolded' proteins unstructured under physiologic conditions?
-
Uversky,V.N. et al. (2000) Why are 'natively unfolded' proteins unstructured under physiologic conditions? Proteins, 41, 415-427.
-
(2000)
Proteins
, vol.41
, pp. 415-427
-
-
Uversky, V.N.1
-
38
-
-
0034865602
-
Methods for improving protein disorder prediction
-
Vucetic,S. et al. (2001) Methods for improving protein disorder prediction. Int. Joint INNS-IEEE Conf. Neural Networks, 4, 2718-2723.
-
(2001)
Int. Joint INNS-IEEE Conf. Neural Networks
, vol.4
, pp. 2718-2723
-
-
Vucetic, S.1
-
39
-
-
1542358787
-
Prediction and functional analysis of native disorder in proteins from the three kingdoms of life
-
Ward,J.J. et al. (2004) Prediction and functional analysis of native disorder in proteins from the three kingdoms of life. J. Mol. Biol., 337, 635-645.
-
(2004)
J. Mol. Biol.
, vol.337
, pp. 635-645
-
-
Ward, J.J.1
-
40
-
-
0029904487
-
NACP, a protein implicated in Alzheimer's disease and learning, is natively unfolded
-
Weinreb,P.H. et al. (1996) NACP, a protein implicated in Alzheimer's disease and learning, is natively unfolded. Biochemistry 35, 13709-13715.
-
(1996)
Biochemistry
, vol.35
, pp. 13709-13715
-
-
Weinreb, P.H.1
-
41
-
-
0000197231
-
The sequence attribute method for determining relationships between sequence and protein disorder
-
Xie,Q. et al. (1998) The sequence attribute method for determining relationships between sequence and protein disorder. Genome Inform. Ser. Workshop Genome Inform., 9, 193-200.
-
(1998)
Genome Inform. Ser. Workshop Genome Inform.
, vol.9
, pp. 193-200
-
-
Xie, Q.1
-
42
-
-
13844272392
-
Bio-basis function neural network for prediction of protease cleavage sites in proteins
-
Yang,Z.R. and Thomson,R. (2005) Bio-basis function neural network for prediction of protease cleavage sites in proteins. IEEE Trans. Neural Networks, 16, 263-274.
-
(2005)
IEEE Trans. Neural Networks
, vol.16
, pp. 263-274
-
-
Yang, Z.R.1
Thomson, R.2
|