-
1
-
-
0034780030
-
Pcons: A neural network based consensus predictor that improves fold recognition
-
Lundström J, Rychlewski L, Bujnicki J, Elofsson A. Pcons: a neural network based consensus predictor that improves fold recognition. Protein Sci 2001;10:2354-2365.
-
(2001)
Protein Sci
, vol.10
, pp. 2354-2365
-
-
Lundström, J.1
Rychlewski, L.2
Bujnicki, J.3
Elofsson, A.4
-
2
-
-
0035698589
-
Cafasp2: The critical assessment of fully automated structure prediction methods
-
Fischer D, Elofsson A, Rychlewski L, Pazos F, Valencia A, Rost B, Ortiz A, Dunbrack R, Cafasp2: the critical assessment of fully automated structure prediction methods. Proteins 2001;Suppl 5:171-183.
-
(2001)
Proteins
, Issue.SUPPL. 5
, pp. 171-183
-
-
Fischer, D.1
Elofsson, A.2
Rychlewski, L.3
Pazos, F.4
Valencia, A.5
Rost, B.6
Ortiz, A.7
Dunbrack, R.8
-
3
-
-
0037624841
-
3d-shotgun: A novel, cooperative, fold recognition meta-predictor
-
Forthcoming
-
Fischer D. 3d-shotgun: a novel, cooperative, fold recognition meta-predictor. Proteins. 2003. Forthcoming.
-
(2003)
Proteins
-
-
Fischer, D.1
-
5
-
-
0035103763
-
Livebench-1: Continuous benchmarking of protein structure prediction servers
-
Bujnicki J, Elofsson A, Fischer D, Rychlewski L. Livebench-1: continuous benchmarking of protein structure prediction servers. Protein Sci 2001;10:352-361.
-
(2001)
Protein Sci
, vol.10
, pp. 352-361
-
-
Bujnicki, J.1
Elofsson, A.2
Fischer, D.3
Rychlewski, L.4
-
6
-
-
0035698724
-
Livebench-2: Large-scale automated evaluation of protein structure prediction servers
-
Bujnicki J, Elofsson A, Fischer D, Rychlewski L. Livebench-2: large-scale automated evaluation of protein structure prediction servers. Proteins 2001;45 Suppl 5:184-191.
-
(2001)
Proteins
, vol.45
, Issue.SUPPL. 5
, pp. 184-191
-
-
Bujnicki, J.1
Elofsson, A.2
Fischer, D.3
Rychlewski, L.4
-
7
-
-
0035702809
-
Critical assesment of methods of proteins structure predictions (CASP): Round II
-
Moult J, Hubbard T, Bryant SH, Fidelis K, Pedersen JT. Critical assesment of methods of proteins structure predictions (CASP): round II. Proteins 1997;Suppl 1:2-6.
-
(1997)
Proteins
, Issue.SUPPL. 1
, pp. 2-6
-
-
Moult, J.1
Hubbard, T.2
Bryant, S.H.3
Fidelis, K.4
Pedersen, J.T.5
-
8
-
-
0032606140
-
Critical assessment of fully automated protein structure prediction methods
-
Fisher D, Barret C, Bryson K, Elofsson A, Godzik A, Jones D, Karplus K, Kelley L, MacCallum R, Pawowski K, Rost B, Rychlewski L, Sternberg M. Critical assessment of fully automated protein structure prediction methods. Proteins 1999;Suppl 3:209-217.
-
(1999)
Proteins
, Issue.SUPPL. 3
, pp. 209-217
-
-
Fisher, D.1
Barret, C.2
Bryson, K.3
Elofsson, A.4
Godzik, A.5
Jones, D.6
Karplus, K.7
Kelley, L.8
MacCallum, R.9
Pawowski, K.10
Rost, B.11
Rychlewski, L.12
Sternberg, M.13
-
9
-
-
0033537993
-
Genthreader: An efficient and reliable protein fold recognition method for genomic sequences
-
Jones D. Genthreader: an efficient and reliable protein fold recognition method for genomic sequences. J Mol Biol 1999;287: 797-815.
-
(1999)
J Mol Biol
, vol.287
, pp. 797-815
-
-
Jones, D.1
-
10
-
-
0026690571
-
A new appoach to protein fold recognition
-
Jones D, Taylor W, Thornton J. A new appoach to protein fold recognition. Nature 1992;358:86-89.
-
(1992)
Nature
, vol.358
, pp. 86-89
-
-
Jones, D.1
Taylor, W.2
Thornton, J.3
-
11
-
-
0034595501
-
Enhanced genome annotation using structural profiles in the program 3d-pssm
-
Kelley L, MacCallum R, Sternberg M. Enhanced genome annotation using structural profiles in the program 3d-pssm. J Mol Biol 2000;299:523-544.
-
(2000)
J Mol Biol
, vol.299
, pp. 523-544
-
-
Kelley, L.1
MacCallum, R.2
Sternberg, M.3
-
12
-
-
0037406141
-
Can correct protein models be identified?
-
Wallner B, Elofsson A. Can correct protein models be identified? Protein Sci 2003;12:1073-1086.
-
(2003)
Protein Sci
, vol.12
, pp. 1073-1086
-
-
Wallner, B.1
Elofsson, A.2
-
13
-
-
0242369645
-
-
Tsigelny IF, editor. La Jolla, CA: International University Line Biotechnology Series
-
Fang H, Wallner B, Lundström J, Wowern VC, Elofsson A. Protein structure prediction: bioinformatics approach. In: Tsigelny IF, editor. La Jolla, CA: International University Line Biotechnology Series; 2002.
-
(2002)
Protein Structure Prediction: Bioinformatics Approach
-
-
Fang, H.1
Wallner, B.2
Lundström, J.3
Wowern, V.C.4
Elofsson, A.5
-
14
-
-
0035703089
-
Rosetta in CASP4: Progress in ab initio protein structure prediction
-
Bonneau R, Tsai J, Ruczinski I, Chivian D, Rohl C, Strauss C, Baker D. Rosetta in CASP4: progress in ab initio protein structure prediction. Proteins 2001;Suppl 5:119-126.
-
(2001)
Proteins
, Issue.SUPPL. 5
, pp. 119-126
-
-
Bonneau, R.1
Tsai, J.2
Ruczinski, I.3
Chivian, D.4
Rohl, C.5
Strauss, C.6
Baker, D.7
-
15
-
-
0033846832
-
Improving the quality of twilight-zone alignments
-
Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci 2000;9:1487-1496.
-
(2000)
Protein Sci
, vol.9
, pp. 1487-1496
-
-
Jaroszewski, L.1
Rychlewski, L.2
Godzik, A.3
-
16
-
-
0001561422
-
Hybrid fold recognition: Combining sequence derived properties with evolution-ary information
-
Altman R, Dunker A, Hunter L, Klieno T, editors. Singapore: World Scientific
-
Fischer D. Hybrid fold recognition: combining sequence derived properties with evolution-ary information. In Pacific symposium on biocomputing. Altman R, Dunker A, Hunter L, Klieno T, editors. Singapore: World Scientific; 2000;5:116-127.
-
(2000)
Pacific Symposium on Biocomputing
, vol.5
, pp. 116-127
-
-
Fischer, D.1
-
17
-
-
0030801002
-
Gapped blast and psi-blast: A new generation of protein database search programs
-
Altschul S, Madden T, Schaffer A, Zhang J, Zhang Z, Miller W, Lipman D. Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res 1997;25:3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.1
Madden, T.2
Schaffer, A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.7
-
18
-
-
0035748354
-
What is the value added by human intervention in protein structure prediction?
-
Karplus K, Karchin R, Barrett C, Tu S, Cline M, Diekhans M, Grate L, Casper J, Hughey R. What is the value added by human intervention in protein structure prediction? Proteins Suppl 2001; 5:86-91.
-
(2001)
Proteins Suppl
, vol.5
, pp. 86-91
-
-
Karplus, K.1
Karchin, R.2
Barrett, C.3
Tu, S.4
Cline, M.5
Diekhans, M.6
Grate, L.7
Casper, J.8
Hughey, R.9
-
19
-
-
0035967880
-
Fugue: Sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties
-
Shi J, Blundell T, Mizuguchi, K. Fugue: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties. J Mol Biol 2001;310: 243-257.
-
(2001)
J Mol Biol
, vol.310
, pp. 243-257
-
-
Shi, J.1
Blundell, T.2
Mizuguchi, K.3
-
20
-
-
0642373240
-
A study of quality measures for protein threading models
-
Cristobal S, Zemla A, Fischer D, Rychlewski L, Elofsson A. A study of quality measures for protein threading models. BMC Bioinformatics 2001;2:
-
(2001)
BMC Bioinformatics
, vol.2
-
-
Cristobal, S.1
Zemla, A.2
Fischer, D.3
Rychlewski, L.4
Elofsson, A.5
-
21
-
-
0033670439
-
Maxsub: An automated measure to assess the quality of protein structure predictions
-
Siew N, Elofsson A, Rychlewski L, Fischer D. Maxsub: an automated measure to assess the quality of protein structure predictions. Bionformatics 2000;16:776-785.
-
(2000)
Bionformatics
, vol.16
, pp. 776-785
-
-
Siew, N.1
Elofsson, A.2
Rychlewski, L.3
Fischer, D.4
-
22
-
-
0027136282
-
Comparative modelling by statisfaction of spatial restraints
-
Sali A, Blundell T. Comparative modelling by statisfaction of spatial restraints. J Mol Biol 1993;234:779-815.
-
(1993)
J Mol Biol
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.2
-
23
-
-
0033578684
-
Protein secondary structure prediction based on position-specific scoring matrices
-
Jones D. Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol 1999;292:195-202.
-
(1999)
J Mol Biol
, vol.292
, pp. 195-202
-
-
Jones, D.1
-
24
-
-
0032605828
-
Processing and analysis of CASP3 protein structure predictions
-
Zemla A, Veclovas C, Moult J, Fidelis K. Processing and analysis of CASP3 protein structure predictions. Proteins 1999;Suppl 3:22-29.
-
(1999)
Proteins
, Issue.SUPPL. 3
, pp. 22-29
-
-
Zemla, A.1
Veclovas, C.2
Moult, J.3
Fidelis, K.4
-
25
-
-
0242330720
-
Livebench-6: Large scale automated evaluation of protein structure prediction servers
-
Rychlewski L, Fischer D, Elofsson A. Livebench-6: large scale automated evaluation of protein structure prediction servers. Proteins 2003;Suppl 6:542-547.
-
(2003)
Proteins
, Issue.SUPPL. 6
, pp. 542-547
-
-
Rychlewski, L.1
Fischer, D.2
Elofsson, A.3
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