-
1
-
-
0037804642
-
Whither RNAi?
-
Anonymous
-
Anonymous. 2003. Whither RNAi? Nat Cell Biol 5: 489-490.
-
(2003)
Nat Cell Biol
, vol.5
, pp. 489-490
-
-
-
2
-
-
0035905766
-
Role for a bidentate ribonuclease in the initiation step of RNA interference
-
Bernstein E, Caudy AA, Hammond SM, Hannon GJ. 2001. Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 409: 363-366.
-
(2001)
Nature
, vol.409
, pp. 363-366
-
-
Bernstein, E.1
Caudy, A.A.2
Hammond, S.M.3
Hannon, G.J.4
-
3
-
-
33646188259
-
39 UTR seed matches, but not overall identity, are associated with RNAi off-targets
-
Birmingham A, Anderson EM, Reynolds A, Ilsley-Tyree D, Leake D, Fedorov Y, Baskerville S, Maksimova E, Robinson K, Karpilow J, et al. 2006. 39 UTR seed matches, but not overall identity, are associated with RNAi off-targets. Nat Methods 3: 199-204.
-
(2006)
Nat Methods
, vol.3
, pp. 199-204
-
-
Birmingham, A.1
Anderson, E.M.2
Reynolds, A.3
Ilsley-Tyree, D.4
Leake, D.5
Fedorov, Y.6
Baskerville, S.7
Maksimova, E.8
Robinson, K.9
Karpilow, J.10
-
4
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Bolstad BM, Irizarry RA, Astrand M, Speed TP. 2003. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19: 185-193.
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
5
-
-
18044377963
-
Principles of microRNA-target recognition
-
doi: 10.1371/journal.pbio.0030085
-
Brennecke J, Stark A, Russell RB, Cohen SM. 2005. Principles of microRNA-target recognition. PLoS Biol 3: e85. doi: 10.1371/journal.pbio.0030085.
-
(2005)
PLoS Biol
, vol.3
-
-
Brennecke, J.1
Stark, A.2
Russell, R.B.3
Cohen, S.M.4
-
6
-
-
20844435197
-
Short hairpin RNA-directed cytosine (CpG) methylation of the RASSF1A gene promoter in HeLa cells
-
Castanotto D, Tommasi S, Li M, Li H, Yanow S, Pfeifer GP, Rossi JJ. 2005. Short hairpin RNA-directed cytosine (CpG) methylation of the RASSF1A gene promoter in HeLa cells. Mol Ther 12: 179-183.
-
(2005)
Mol Ther
, vol.12
, pp. 179-183
-
-
Castanotto, D.1
Tommasi, S.2
Li, M.3
Li, H.4
Yanow, S.5
Pfeifer, G.P.6
Rossi, J.J.7
-
8
-
-
33748346026
-
Perfect seed pairing is not a generally reliable predictor for miRNA-target interactions
-
Didiano D, Hobert O. 2006. Perfect seed pairing is not a generally reliable predictor for miRNA-target interactions. Nat Struct Mol Biol 13: 849-851.
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 849-851
-
-
Didiano, D.1
Hobert, O.2
-
9
-
-
0035942736
-
Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells
-
Elbashir SM, Harborth J, Lendeckel W, Yalcin A, Weber K, Tuschl T. 2001a. Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature 411: 494-498.
-
(2001)
Nature
, vol.411
, pp. 494-498
-
-
Elbashir, S.M.1
Harborth, J.2
Lendeckel, W.3
Yalcin, A.4
Weber, K.5
Tuschl, T.6
-
10
-
-
0035863097
-
RNA interference is mediated by 21- and 22-nucleotide RNAs
-
Elbashir SM, Lendeckel W, Tuschl T. 2001b. RNA interference is mediated by 21- and 22-nucleotide RNAs. Genes & Dev 15: 188-200.
-
(2001)
Genes & Dev
, vol.15
, pp. 188-200
-
-
Elbashir, S.M.1
Lendeckel, W.2
Tuschl, T.3
-
11
-
-
0035803583
-
Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate
-
Elbashir SM, Martinez J, Patkaniowska A, Lendeckel W, Tuschl T. 2001c. Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate. EMBO J 20: 6877-6888.
-
(2001)
EMBO J
, vol.20
, pp. 6877-6888
-
-
Elbashir, S.M.1
Martinez, J.2
Patkaniowska, A.3
Lendeckel, W.4
Tuschl, T.5
-
12
-
-
0042173218
-
SiRNA-mediated inhibition of vascular endothelial growth factor severely limits tumor resistance to antiangiogenic thrombospondin-1 and slows tumor vascularization and growth
-
Filleur S, Courtin A, Ait-Si-Ali S, Guglielmi J, Merle C, Harel-Bellan A, Clezardin P, Cabon F. 2003. SiRNA-mediated inhibition of vascular endothelial growth factor severely limits tumor resistance to antiangiogenic thrombospondin-1 and slows tumor vascularization and growth. Cancer Res 63: 3919-3922.
-
(2003)
Cancer Res
, vol.63
, pp. 3919-3922
-
-
Filleur, S.1
Courtin, A.2
Ait-Si-Ali, S.3
Guglielmi, J.4
Merle, C.5
Harel-Bellan, A.6
Clezardin, P.7
Cabon, F.8
-
13
-
-
0032545933
-
Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
-
Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE, Mello CC. 1998. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391: 806-811.
-
(1998)
Nature
, vol.391
, pp. 806-811
-
-
Fire, A.1
Xu, S.2
Montgomery, M.K.3
Kostas, S.A.4
Driver, S.E.5
Mello, C.C.6
-
14
-
-
0034693753
-
Met receptor tyrosine kinase: Enhanced signaling through adapter proteins
-
Furge KA, Zhang YW, Vande Woude GF. 2000. Met receptor tyrosine kinase: Enhanced signaling through adapter proteins. Oncogene 19: 5582-5589.
-
(2000)
Oncogene
, vol.19
, pp. 5582-5589
-
-
Furge, K.A.1
Zhang, Y.W.2
Vande Woude, G.F.3
-
15
-
-
34250805982
-
MicroRNA targeting specificity in mammals: Determinants beyond seed pairing
-
Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, Bartel DP. 2007. MicroRNA targeting specificity in mammals: Determinants beyond seed pairing. Mol Cell 27: 91-105.
-
(2007)
Mol Cell
, vol.27
, pp. 91-105
-
-
Grimson, A.1
Farh, K.K.2
Johnston, W.K.3
Garrett-Engele, P.4
Lim, L.P.5
Bartel, D.P.6
-
16
-
-
0033615491
-
A species of small antisense RNA in posttranscriptional gene silencing in plants
-
Hamilton AJ, Baulcombe DC. 1999. A species of small antisense RNA in posttranscriptional gene silencing in plants. Science 286: 950-952.
-
(1999)
Science
, vol.286
, pp. 950-952
-
-
Hamilton, A.J.1
Baulcombe, D.C.2
-
17
-
-
66249108936
-
Promoter targeted small RNAs induce long-term transcriptional gene silencing in human cells
-
Hawkins PG, Santoso S, Adams C, Anest V, Morris KV. 2009. Promoter targeted small RNAs induce long-term transcriptional gene silencing in human cells. Nucleic Acids Res 37: 2984-2995.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 2984-2995
-
-
Hawkins, P.G.1
Santoso, S.2
Adams, C.3
Anest, V.4
Morris, K.V.5
-
18
-
-
34547931473
-
Neuropilin-1 promotes human glioma progression through potentiating the activity of the HGF/SF autocrine pathway
-
Hu B, Guo P, Bar-Joseph I, Imanishi Y, Jarzynka MJ, Bogler O, Mikkelsen T, Hirose T, Nishikawa R, Cheng SY. 2007. Neuropilin-1 promotes human glioma progression through potentiating the activity of the HGF/SF autocrine pathway. Oncogene 26: 5577-5586.
-
(2007)
Oncogene
, vol.26
, pp. 5577-5586
-
-
Hu, B.1
Guo, P.2
Bar-Joseph, I.3
Imanishi, Y.4
Jarzynka, M.J.5
Bogler, O.6
Mikkelsen, T.7
Hirose, T.8
Nishikawa, R.9
Cheng, S.Y.10
-
19
-
-
0037685280
-
Expression profiling reveals offtarget gene regulation by RNAi
-
Jackson AL, Bartz SR, Schelter J, Kobayashi SV, Burchard J, Mao M, Li B, Cavet G, Linsley PS. 2003. Expression profiling reveals offtarget gene regulation by RNAi. Nat Biotechnol 21: 635-637.
-
(2003)
Nat Biotechnol
, vol.21
, pp. 635-637
-
-
Jackson, A.L.1
Bartz, S.R.2
Schelter, J.3
Kobayashi, S.V.4
Burchard, J.5
Mao, M.6
Li, B.7
Cavet, G.8
Linsley, P.S.9
-
20
-
-
33745612464
-
Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity
-
Jackson AL, Burchard J, Schelter J, Chau BN, Cleary M, Lim L, Linsley PS. 2006. Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity. RNA 12: 1179-1187.
-
(2006)
RNA
, vol.12
, pp. 1179-1187
-
-
Jackson, A.L.1
Burchard, J.2
Schelter, J.3
Chau, B.N.4
Cleary, M.5
Lim, L.6
Linsley, P.S.7
-
21
-
-
33847081733
-
Activating gene expression in mammalian cells with promoter-targeted duplex RNAs
-
Janowski BA, Younger ST, Hardy DB, Ram R, Huffman KE, Corey DR. 2007. Activating gene expression in mammalian cells with promoter-targeted duplex RNAs. Nat Chem Biol 3: 166-173.
-
(2007)
Nat Chem Biol
, vol.3
, pp. 166-173
-
-
Janowski, B.A.1
Younger, S.T.2
Hardy, D.B.3
Ram, R.4
Huffman, K.E.5
Corey, D.R.6
-
22
-
-
33748368912
-
Argonaute-1 directs siRNA-mediated transcriptional gene silencing in human cells
-
Kim DH, Villeneuve LM, Morris KV, Rossi JJ. 2006. Argonaute-1 directs siRNA-mediated transcriptional gene silencing in human cells. Nat Struct Mol Biol 13: 793-797.
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 793-797
-
-
Kim, D.H.1
Villeneuve, L.M.2
Morris, K.V.3
Rossi, J.J.4
-
23
-
-
1642603947
-
A small modulatory dsRNA specifies the fate of adult neural stem cells
-
Kuwabara T, Hsieh J, Nakashima K, Taira K, Gage FH. 2004. A small modulatory dsRNA specifies the fate of adult neural stem cells. Cell 116: 779-793.
-
(2004)
Cell
, vol.116
, pp. 779-793
-
-
Kuwabara, T.1
Hsieh, J.2
Nakashima, K.3
Taira, K.4
Gage, F.H.5
-
24
-
-
33751251990
-
Small dsRNAs induce transcriptional activation in human cells
-
Li LC, Okino ST, Zhao H, Pookot D, Place RF, Urakami S, Enokida H, Dahiya R. 2006. Small dsRNAs induce transcriptional activation in human cells. Proc Natl Acad Sci 103: 17337-17342.
-
(2006)
Proc Natl Acad Sci
, vol.103
, pp. 17337-17342
-
-
Li, L.C.1
Okino, S.T.2
Zhao, H.3
Pookot, D.4
Place, R.F.5
Urakami, S.6
Enokida, H.7
Dahiya, R.8
-
25
-
-
0026729382
-
The SH2 and SH3 domain-containing protein GRB2 links receptor tyrosine kinases to ras signaling
-
Lowenstein EJ, Daly RJ, Batzer AG, Li W, Margolis B, Lammers R, Ullrich A, Skolnik EY, Bar-Sagi D, Schlessinger J. 1992. The SH2 and SH3 domain-containing protein GRB2 links receptor tyrosine kinases to ras signaling. Cell 70: 431-442.
-
(1992)
Cell
, vol.70
, pp. 431-442
-
-
Lowenstein, E.J.1
Daly, R.J.2
Batzer, A.G.3
Li, W.4
Margolis, B.5
Lammers, R.6
Ullrich, A.7
Skolnik, E.Y.8
Bar-Sagi, D.9
Schlessinger, J.10
-
26
-
-
34248575149
-
Integrating signals from RTKs to ERK/MAPK
-
McKay MM, Morrison DK. 2007. Integrating signals from RTKs to ERK/MAPK. Oncogene 26: 3113-3121.
-
(2007)
Oncogene
, vol.26
, pp. 3113-3121
-
-
McKay, M.M.1
Morrison, D.K.2
-
27
-
-
0034596989
-
Transcriptional silencing and promoter methylation triggered by double-stranded RNA
-
Mette MF, Aufsatz W, van der Winden J, Matzke MA, Matzke AJ. 2000. Transcriptional silencing and promoter methylation triggered by double-stranded RNA. EMBO J 19: 5194-5201.
-
(2000)
EMBO J
, vol.19
, pp. 5194-5201
-
-
Mette, M.F.1
Aufsatz, W.2
van der Winden, J.3
Matzke, M.A.4
Matzke, A.J.5
-
28
-
-
0942279615
-
Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery
-
Pal-Bhadra M, Leibovitch BA, Gandhi SG, Rao M, Bhadra U, Birchler JA, Elgin SC. 2004. Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery. Science 303: 669-672.
-
(2004)
Science
, vol.303
, pp. 669-672
-
-
Pal-Bhadra, M.1
Leibovitch, B.A.2
Gandhi, S.G.3
Rao, M.4
Bhadra, U.5
Birchler, J.A.6
Elgin, S.C.7
-
29
-
-
4644237189
-
Fast and effective predictionofmicroRNA/target duplexes
-
Rehmsmeier M, Steffen P, Hochsmann M, Giegerich R. 2004. Fast and effective predictionofmicroRNA/target duplexes. RNA 10: 1507-1517.
-
(2004)
RNA
, vol.10
, pp. 1507-1517
-
-
Rehmsmeier, M.1
Steffen, P.2
Hochsmann, M.3
Giegerich, R.4
-
30
-
-
0032725554
-
p42/p44 mitogen-activated protein kinases phosphorylate hypoxia-inducible factor 1a (HIF-1α) and enhance the transcriptional activity of HIF-1
-
Richard DE, Berra E, Gothie E, Roux D, Pouyssegur J. 1999. p42/p44 mitogen-activated protein kinases phosphorylate hypoxia-inducible factor 1a (HIF-1α) and enhance the transcriptional activity of HIF-1. J Biol Chem 274: 32631-32637.
-
(1999)
J Biol Chem
, vol.274
, pp. 32631-32637
-
-
Richard, D.E.1
Berra, E.2
Gothie, E.3
Roux, D.4
Pouyssegur, J.5
-
31
-
-
10744219688
-
Short interfering RNAs can induce unexpected and divergent changes in the levels of untargeted proteins in mammalian cells
-
Scacheri PC, Rozenblatt-Rosen O, Caplen NJ,Wofsberg TG, Umayam L, Lee JC, Hughes CM, Shanmugam KS, Bhattacharjee A, Meyerson M, et al. 2004. Short interfering RNAs can induce unexpected and divergent changes in the levels of untargeted proteins in mammalian cells. Proc Natl Acad Sci 101: 1892-1897.
-
(2004)
Proc Natl Acad Sci
, vol.101
, pp. 1892-1897
-
-
Scacheri, P.C.1
Rozenblatt-Rosen, O.2
Caplen, N.J.3
Wofsberg, T.G.4
Umayam, L.5
Lee, J.C.6
Hughes, C.M.7
Shanmugam, K.S.8
Bhattacharjee, A.9
Meyerson, M.10
-
32
-
-
7444229834
-
Inhibition of angiogenesis by growth factor receptor bound protein 2-Src homology 2 domain bound antagonists
-
Soriano JV, Liu N, Gao Y, Yao ZJ, Ishibashi T, Underhill C, Burke TR Jr, Bottaro DP. 2004. Inhibition of angiogenesis by growth factor receptor bound protein 2-Src homology 2 domain bound antagonists. Mol Cancer Ther 3: 1289-1299.
-
(2004)
Mol Cancer Ther
, vol.3
, pp. 1289-1299
-
-
Soriano, J.V.1
Liu, N.2
Gao, Y.3
Yao, Z.J.4
Ishibashi, T.5
Underhill, C.6
Burke Jr, T.R.7
Bottaro, D.P.8
-
33
-
-
23044507007
-
Short doublestranded RNA induces transcriptional gene silencing in human cancer cells in the absence of DNA methylation
-
Ting AH, Schuebel KE, Herman JG, Baylin SB. 2005. Short doublestranded RNA induces transcriptional gene silencing in human cancer cells in the absence of DNA methylation. Nat Genet 37: 906-910.
-
(2005)
Nat Genet
, vol.37
, pp. 906-910
-
-
Ting, A.H.1
Schuebel, K.E.2
Herman, J.G.3
Baylin, S.B.4
-
34
-
-
46949101756
-
Offtarget effects of siRNA specific for GFP
-
doi: 10.1186/1471-2199-9-60
-
Tschuch C, Schulz A, Pscherer A, Werft W, Benner A, Hotz-Wagenblatt A, Barrionuevo LS, Lichter P, Mertens D. 2008. Offtarget effects of siRNA specific for GFP. BMC Mol Biol 9: 60. doi: 10.1186/1471-2199-9-60.
-
(2008)
BMC Mol Biol
, vol.9
, pp. 60
-
-
Tschuch, C.1
Schulz, A.2
Pscherer, A.3
Werft, W.4
Benner, A.5
Hotz-Wagenblatt, A.6
Barrionuevo, L.S.7
Lichter, P.8
Mertens, D.9
-
35
-
-
29244445499
-
The role of transcriptional coactivator TRAP220 in myelomonocytic differentiation
-
Urahama N, Ito M, Sada A, Yakushijin K, Yamamoto K, Okamura A, Minagawa K, Hato A, Chihara K, Roeder RG, et al. 2005. The role of transcriptional coactivator TRAP220 in myelomonocytic differentiation. Genes Cells 10: 1127-1137.
-
(2005)
Genes Cells
, vol.10
, pp. 1127-1137
-
-
Urahama, N.1
Ito, M.2
Sada, A.3
Yakushijin, K.4
Yamamoto, K.5
Okamura, A.6
Minagawa, K.7
Hato, A.8
Chihara, K.9
Roeder, R.G.10
-
36
-
-
0037072661
-
Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi
-
Volpe TA, Kidner C, Hall IM, Teng G, Grewal SI, Martienssen RA. 2002. Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science 297: 1833-1837.
-
(2002)
Science
, vol.297
, pp. 1833-1837
-
-
Volpe, T.A.1
Kidner, C.2
Hall, I.M.3
Teng, G.4
Grewal, S.I.5
Martienssen, R.A.6
-
37
-
-
31044433795
-
The antisense strand of small interfering RNAs directs histone methylation and transcriptional gene silencing in human cells
-
Weinberg MS, Villeneuve LM, Ehsani A, Amarzguioui M, Aagaard L, Chen ZX, Riggs AD, Rossi JJ, Morris KV. 2006. The antisense strand of small interfering RNAs directs histone methylation and transcriptional gene silencing in human cells. RNA 12: 256-262.
-
(2006)
RNA
, vol.12
, pp. 256-262
-
-
Weinberg, M.S.1
Villeneuve, L.M.2
Ehsani, A.3
Amarzguioui, M.4
Aagaard, L.5
Chen, Z.X.6
Riggs, A.D.7
Rossi, J.J.8
Morris, K.V.9
-
38
-
-
37549039802
-
An RNA targeted to the HIV-1 LTR promoter modulates indiscriminate off-target gene activation
-
Weinberg MS, Barichievy S, Schaffer L, Han J, Morris KV. 2007. An RNA targeted to the HIV-1 LTR promoter modulates indiscriminate off-target gene activation. Nucleic Acids Res 35: 7303-7312.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7303-7312
-
-
Weinberg, M.S.1
Barichievy, S.2
Schaffer, L.3
Han, J.4
Morris, K.V.5
-
39
-
-
4344692045
-
Constitutive and inducible expression and regulation of vascular endothelial growth factor
-
Xie K, Wei D, Shi Q, Huang S. 2004. Constitutive and inducible expression and regulation of vascular endothelial growth factor. Cytokine Growth Factor Rev 15: 297-324.
-
(2004)
Cytokine Growth Factor Rev
, vol.15
, pp. 297-324
-
-
Xie, K.1
Wei, D.2
Shi, Q.3
Huang, S.4
-
40
-
-
0034737298
-
RNAi: Doublestranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals
-
Zamore PD, Tuschl T, Sharp PA, Bartel DP. 2000. RNAi: doublestranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals. Cell 101: 25-33.
-
(2000)
Cell
, vol.101
, pp. 25-33
-
-
Zamore, P.D.1
Tuschl, T.2
Sharp, P.A.3
Bartel, D.P.4
-
41
-
-
33746631240
-
Grb2 is a negative modulator of the intrinsic Ras-GEF activity of hSos1
-
Zarich N, Oliva JL, Martinez N, Jorge R, Ballester A, Gutierrez-Eisman S, Garcia-Vargas S, Rojas JM. 2006. Grb2 is a negative modulator of the intrinsic Ras-GEF activity of hSos1. Mol Biol Cell 17: 3591-3597.
-
(2006)
Mol Biol Cell
, vol.17
, pp. 3591-3597
-
-
Zarich, N.1
Oliva, J.L.2
Martinez, N.3
Jorge, R.4
Ballester, A.5
Gutierrez-Eisman, S.6
Garcia-Vargas, S.7
Rojas, J.M.8
|