메뉴 건너뛰기




Volumn 126, Issue 5, 2009, Pages 605-614

Application of serial analysis of gene expression to the study of human genetic disease

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; MESSENGER RNA;

EID: 73949112147     PISSN: 03406717     EISSN: 14321203     Source Type: Journal    
DOI: 10.1007/s00439-009-0719-5     Document Type: Review
Times cited : (21)

References (95)
  • 4
    • 0036990053 scopus 로고    scopus 로고
    • A quantitative and validated sage transcriptome reference for adult mouse heart
    • Anisimov SV, Tarasov KV, Stern MD, Lakatta EG, Boheler KR (2002a) A quantitative and validated SAGE transcriptome reference for adult mouse heart. Genomics 80(2):13-222
    • (2002) Genomics , vol.80 , Issue.2 , pp. 13-222
    • Anisimov, S.V.1    Tarasov, K.V.2    Stern, M.D.3    Lakatta, E.G.4    Boheler, K.R.5
  • 5
    • 0036768299 scopus 로고    scopus 로고
    • Sage identification of differentiation responsive genes in P19 embryonic cells induced to form cardiomyocytes in vitro
    • Anisimov SV, Tarasov KV, Riordon D, Wobus AM, Boheler KR (2002b) SAGE identification of differentiation responsive genes in P19 embryonic cells induced to form cardiomyocytes in vitro. Mech Dev 117(l-2):25-74
    • (2002) Mech Dev , vol.117 , Issue.1-2 , pp. 25-74
    • Anisimov, S.V.1    Tarasov, K.V.2    Riordon, D.3    Wobus, A.M.4    Boheler, K.R.5
  • 6
    • 39149132799 scopus 로고    scopus 로고
    • Increased progenitor cell proliferation and astrogenesis in the partial progressive 6-hydroxydopamine model of parkinson's disease
    • Aponso PM, Faull RL, Connor B (2008) Increased progenitor cell proliferation and astrogenesis in the partial progressive 6-hydroxydopamine model of Parkinson's disease. Neuroscience 151(4):1142-1153
    • (2008) Neuroscience , vol.151 , Issue.4 , pp. 1142-1153
    • Aponso, P.M.1    Faull, R.L.2    Connor, B.3
  • 10
    • 0028080055 scopus 로고
    • Silent brain infarcts in 755 consecutive patients with a first-ever supratentorial ischemic stroke
    • Relationship with Index-stroke Subtype Vascular Risk Factors and Mortality
    • Boon A, Lodder J, Heuts-van Raak L, Kessels F (1994) Silent brain infarcts in 755 consecutive patients with a first-ever supratentorial ischemic stroke. Relationship with index-stroke subtype, vascular risk factors, and mortality. Stroke 25(12):2384-2390
    • (1994) Stroke , vol.25 , Issue.12 , pp. 2384-2390
    • Boon, A.1    Lodder, J.2    Heuts-Van Raak, L.3    Kessels, F.4
  • 15
    • 33751017957 scopus 로고    scopus 로고
    • Sequencing medicago truncatula expressed sequenced tags using 454 life sciences technology
    • Cheung F, Haas BJ, Goldberg SM, May GD, Xiao Y, Town CD (2006) Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology. BMC Genomics 7:272
    • (2006) BMC Genomics , vol.7 , pp. 272
    • Cheung, F.1    Haas, B.J.2    Goldberg, S.M.3    May, G.D.4    Xiao, Y.5    Town, C.D.6
  • 18
    • 32944472418 scopus 로고    scopus 로고
    • A novel gene (Cmya3) Induced in the heart by angiotensin II-dependent but not salt-dependent hypertension in mice
    • Duka A, Schwartz F, Duka I, Johns C, Melista E, Gavras I, Gavras H (2006) A novel gene (Cmya3) induced in the heart by angiotensin II-dependent but not salt-dependent hypertension in mice. Am J Hypertens 19(3):275-281
    • (2006) Am J Hypertens , vol.19 , Issue.3 , pp. 275-281
    • Duka, A.1    Schwartz, F.2    Duka, I.3    Johns, C.4    Melista, E.5    Gavras, I.6    Gavras, H.7
  • 22
    • 16844361869 scopus 로고    scopus 로고
    • Family history of stroke in patients with transient ischemic attack in relation to hypertension and other intermediate phenotypes
    • Flossmann E, Rothwell PM (2005) Family history of stroke in patients with transient ischemic attack in relation to hypertension and other intermediate phenotypes. Stroke 36(4):830-835
    • (2005) Stroke , vol.36 , Issue.4 , pp. 830-835
    • Flossmann, E.1    Rothwell, P.M.2
  • 23
    • 58149099037 scopus 로고    scopus 로고
    • Gain-of-function R225Q mutation in AMP-activated protein kinase gamma3 subunit increases mitochondrial biogenesis in glycolytic skeletal muscle
    • Garcia-Roves PM, Osier ME, Holmström MH, Zierath JR (2008) Gain-of-function R225Q mutation in AMP-activated protein kinase gamma3 subunit increases mitochondrial biogenesis in glycolytic skeletal muscle. J Biol Chem 283(51):35724-35734
    • (2008) J Biol Chem , vol.283 , Issue.51 , pp. 35724-35734
    • Garcia-Roves, P.M.1    Osier, M.E.2    Holmström, M.H.3    Zierath, J.R.4
  • 24
    • 68649110032 scopus 로고    scopus 로고
    • Mendelian forms of parkinson's disease
    • epub Ahead of Print
    • Gasser T (2009) Mendelian forms of Parkinson's disease. Biochim Biophys Acta (epub ahead of print)
    • (2009) Biochim Biophys Acta
    • Gasser, T.1
  • 25
    • 0037443545 scopus 로고    scopus 로고
    • Transcript profiling of human platelets using microarray and serial analysis of gene expression
    • Gnatenko DV, Dunn JJ, McCorkle SR, Weissmann D, Perrotta PL, Bahou WF (2003) Transcript profiling of human platelets using microarray and serial analysis of gene expression. Blood 101(6):2285-2293
    • (2003) Blood , vol.101 , Issue.6 , pp. 2285-2293
    • Gnatenko, D.V.1    Dunn, J.J.2    McCorkle, S.R.3    Weissmann, D.4    Perrotta, P.L.5    Bahou, W.F.6
  • 28
    • 58149510524 scopus 로고    scopus 로고
    • Serial analysis of gene expression reveals differential expression between endometriosis and normal endometrium
    • Possible Roles for AXL and SHC1 in the Pathogenesis of Endometriosis
    • Honda H, Barrueto FF, Gogusev J, Im DD, Morin PJ (2008) Serial analysis of gene expression reveals differential expression between endometriosis and normal endometrium. Possible roles for AXL and SHC1 in the pathogenesis of endometriosis. Reprod Biol Endocrinol 6:59.
    • (2008) Reprod Biol Endocrinol , vol.6 , pp. 59
    • Honda, H.1    Barrueto, F.F.2    Gogusev, J.3    Im, D.D.4    Morin, P.J.5
  • 30
    • 0002845329 scopus 로고
    • Dopamine in parkinson's disease and other neurological disturbances
    • Horn AS, Korf J, Westerink BHC (eds), Academic press, New York
    • Hornykiewicz O (1979) Dopamine in Parkinson's disease and other neurological disturbances. In: Horn AS, Korf J, Westerink BHC (eds) The neurobiology of dopamine. Academic press, New York, pp 633-654
    • (1979) The Neurobiology of Dopamine , pp. 633-654
    • Hornykiewicz, O.1
  • 32
    • 33645860825 scopus 로고    scopus 로고
    • Reactive oxygen species have a causal role in multiple forms of insulin resistance
    • Houstis N, Rosen ED, Lander ES (2006) Reactive oxygen species have a causal role in multiple forms of insulin resistance. Nature 440(7086):944-948
    • (2006) Nature , vol.440 , Issue.7086 , pp. 944-948
    • Houstis, N.1    Rosen, E.D.2    Lander, E.S.3
  • 35
    • 0034283071 scopus 로고    scopus 로고
    • Direct comparison of genechip and sage on the quantitative accuracy in transcript profiling analysis
    • Ishii M, Hashimoto S, Tsutsumi S, Wada Y, Matsushima K, Kodama T, Aburatani H (2000) Direct comparison of GeneChip and SAGE on the quantitative accuracy in transcript profiling analysis. Genomics 68(2):136-143
    • (2000) Genomics , vol.68 , Issue.2 , pp. 136-143
    • Ishii, M.1    Hashimoto, S.2    Tsutsumi, S.3    Wada, Y.4    Matsushima, K.5    Kodama, T.6    Aburatani, H.7
  • 40
    • 42449113349 scopus 로고    scopus 로고
    • Ppargc1a variation associated with dna damage, diabetes, and cardiovascular diseases: The boston puerto rican health study
    • Lai CQ, Tucker KL, Parnell LD, Adiconis X, García-Bailo B, Griffith J, Meydani M, Ordovás JM (2008) PPARGC1A variation associated with DNA damage, diabetes, and cardiovascular diseases: the Boston Puerto Rican Health Study. Diabetes. 57(4):809-816
    • (2008) Diabetes , vol.57 , Issue.4 , pp. 809-816
    • Lai, C.Q.1    Tucker, K.L.2    Parnell, L.D.3    Adiconis, X.4    García-Bailo, B.5    Griffith, J.6    Meydani, M.7    Ordovás, J.M.8
  • 45
    • 12344305124 scopus 로고    scopus 로고
    • Mitochondrial dysfunction and type 2 diabetes
    • Lowell BB, Shulman GI (2005) Mitochondrial dysfunction and type 2 diabetes. Science 307(5708):384-387
    • (2005) Science , vol.307 , Issue.5708 , pp. 384-387
    • Lowell, B.B.1    Shulman, G.I.2
  • 46
    • 38449121126 scopus 로고    scopus 로고
    • Comparison between the gene expression profile of human müller cells and two spontaneous müller cell lines
    • Lupien CB, Bolduc C, Landreville S, Salesse C (2007) Comparison between the gene expression profile of human Müller cells and two spontaneous Müller cell lines. Invest Ophthalmol Vis Sci 48(11):5229-5242
    • (2007) Invest Ophthalmol Vis Sci , vol.48 , Issue.11 , pp. 5229-5242
    • Lupien, C.B.1    Bolduc, C.2    Landreville, S.3    Salesse, C.4
  • 48
    • 0026718086 scopus 로고
    • Brain, skeletal muscle and platelet homogenate mitochondrial function in parkinson's disease
    • Mann VM, Cooper JM, Krige D, Daniel SE, Schapira AH, Marsden CD (1992) Brain, skeletal muscle and platelet homogenate mitochondrial function in Parkinson's disease. Brain 115(Pt 2):333-342
    • (1992) Brain , vol.115 , Issue.PART 2 , pp. 333-342
    • Mann, V.M.1    Cooper, J.M.2    Krige, D.3    Daniel, S.E.4    Schapira, A.H.5    Marsden, C.D.6
  • 49
    • 0037403505 scopus 로고    scopus 로고
    • Global up-regulation of chromosome 21 gene expression in the developing down syndrome brain
    • Mao R, Zielke CL, Zielke HR, Pevsner J (2003) Global up-regulation of chromosome 21 gene expression in the developing Down syndrome brain. Genomics 81(5):457-467
    • (2003) Genomics , vol.81 , Issue.5 , pp. 457-467
    • Mao, R.1    Zielke, C.L.2    Zielke, H.R.3    Pevsner, J.4
  • 50
    • 52949096084 scopus 로고    scopus 로고
    • Next-generation dna sequencing methods
    • Mardis ER (2008) Next-generation DNA sequencing methods. Annu Rev Genomics Hum Genet 9:387-402
    • (2008) Annu Rev Genomics Hum Genet , vol.9 , pp. 387-402
    • Mardis, E.R.1
  • 51
    • 58149293709 scopus 로고    scopus 로고
    • Supersage: A modern platform for genome-wide quantitative transcript profiling
    • Matsumura H, Krüger DH, Kahl G, Terauchi R (2008) SuperSAGE: a modern platform for genome-wide quantitative transcript profiling. Curr Pharm Biotechnol 9(5):368-374
    • (2008) Curr Pharm Biotechnol , vol.9 , Issue.5 , pp. 368-374
    • Matsumura, H.1    Krüger, D.H.2    Kahl, G.3    Terauchi, R.4
  • 53
    • 0033636523 scopus 로고    scopus 로고
    • Loss of insulin signaling in hepatocytes leads to severe insulin resistance and progressive hepatic dysfunction
    • Michael MD, Kulkarni RN, Postic C, Previs SF, Shulman GI, Magnuson MA, Kahn CR (2000) Loss of insulin signaling in hepatocytes leads to severe insulin resistance and progressive hepatic dysfunction. Mol Cell 6(1):87-97
    • (2000) Mol Cell , vol.6 , Issue.1 , pp. 87-97
    • Michael, M.D.1    Kulkarni, R.N.2    Postic, C.3    Previs, S.F.4    Shulman, G.I.5    Magnuson, M.A.6    Kahn, C.R.7
  • 54
    • 57349086735 scopus 로고    scopus 로고
    • Comparative analysis of proteome and transcriptome in human hepatocellular carcinoma using 2d-dige and sage
    • Minagawa H, Yamashita T, Honda M, Tabuse Y, Kamijo K, Tsugita A, Kaneko S (2008) Comparative analysis of proteome and transcriptome in human hepatocellular carcinoma using 2D-DIGE and SAGE. Protein J 27(7-8):409-419
    • (2008) Protein J , vol.27 , Issue.7-8 , pp. 409-419
    • Minagawa, H.1    Yamashita, T.2    Honda, M.3    Tabuse, Y.4    Kamijo, K.5    Tsugita, A.6    Kaneko, S.7
  • 59
    • 0023762799 scopus 로고
    • Enzymatic amplification of platelet-specific messenger rna using the polymerase chain reaction
    • Newman PJ, Gorski J, White GC 2nd, Gidwitz S, Cretney CJ, Aster RH (1988) Enzymatic amplification of platelet-specific messenger RNA using the polymerase chain reaction. J Clin Invest 82(2):739-743
    • (1988) J Clin Invest , vol.82 , Issue.2 , pp. 739-743
    • Newman, P.J.1    Gorski, J.2    White II, G.C.3    Gidwitz, S.4    Cretney, C.J.5    Aster, R.H.6
  • 62
    • 33744996529 scopus 로고    scopus 로고
    • Atherosclerotic plaque macrophage transcriptional regulators are expressed in blood and modulated by tristetraprolin
    • Patino WD, Kang JG, Matoba S, Mian OY, Gochuico BR, Hwang PM (2006) Atherosclerotic plaque macrophage transcriptional regulators are expressed in blood and modulated by tristetraprolin. Circ Res 98(10):1282-1289
    • (2006) Circ Res , vol.98 , Issue.10 , pp. 1282-1289
    • Patino, W.D.1    Kang, J.G.2    Matoba, S.3    Mian, O.Y.4    Gochuico, B.R.5    Hwang, P.M.6
  • 64
    • 0034455762 scopus 로고    scopus 로고
    • Serial analysis of gene expression as a tool to assess the human thyroid expression profile and to identify novel thyroidal genes
    • Pauws E, Moreno JC, Tijssen M, Baas F, de Vijlder JJ, Ris-Stalpers C (2000) Serial analysis of gene expression as a tool to assess the human thyroid expression profile and to identify novel thyroidal genes. J Clin Endocrinol Metab 85(5):1923-1927
    • (2000) J Clin Endocrinol Metab , vol.85 , Issue.5 , pp. 1923-1927
    • Pauws, E.1    Moreno, J.C.2    Tijssen, M.3    Baas, F.4    De Vijlder, J.J.5    Ris-Stalpers, C.6
  • 66
    • 0032589689 scopus 로고    scopus 로고
    • Activation of ppargamma coactivator-1 through transcription factor docking
    • Puigserver P, Adelmant G, Wu Z, Fan M, Xu J, O'Malley B, Spiegelman BM (1999) Activation of PPARgamma coactivator-1 through transcription factor docking. Science 286(5443):1368-1371
    • (1999) Science , vol.286 , Issue.5443 , pp. 1368-1371
    • Puigserver, P.1    Adelmant, G.2    Wu, Z.3    Fan, M.4    Xu, J.5    O'Malley, B.6    Spiegelman, B.M.7
  • 71
    • 0035856949 scopus 로고    scopus 로고
    • Insulin signalling and the regulation of glucose and lipid metabolism
    • Saltiel AR, Kahn CR (2001) Insulin signalling and the regulation of glucose and lipid metabolism. Nature 414(6865):799-806
    • (2001) Nature , vol.414 , Issue.6865 , pp. 799-806
    • Saltiel, A.R.1    Kahn, C.R.2
  • 73
    • 1842576536 scopus 로고    scopus 로고
    • Heritability of ischemic stroke in relation to age, vascular risk factors, and subtypes of incident stroke in population-based studies
    • Schulz UG, Flossmann E, Rothwell PM (2004) Heritability of ischemic stroke in relation to age, vascular risk factors, and subtypes of incident stroke in population-based studies. Stroke. 35(4):819-824
    • (2004) Stroke , vol.35 , Issue.4 , pp. 819-824
    • Schulz, U.G.1    Flossmann, E.2    Rothwell, P.M.3
  • 77
  • 79
    • 12744273390 scopus 로고    scopus 로고
    • Genetic variations related to hypertension: A review
    • Tanira MO, Al Balushi KA (2005) Genetic variations related to hypertension: a review. J Hum Hypertens 19(1):7-19
    • (2005) J Hum Hypertens 1 , vol.9 , Issue.1 , pp. 7-19
    • Tanira, M.O.1    Al Balushi, K.A.2
  • 80
    • 38049091067 scopus 로고    scopus 로고
    • Gene expression profiling by massively parallel sequencing
    • Torres TT, Metta M, Ottenwälder B, Schlötterer C (2008) Gene expression profiling by massively parallel sequencing. Genome Res 18(1):172-177
    • (2008) Genome Res , vol.18 , Issue.1 , pp. 172-177
    • Torres, T.T.1    Metta, M.2    Ottenwälder, B.3    Schlötterer, C.4
  • 83
    • 0036091877 scopus 로고    scopus 로고
    • Angiographic distribution of lower extremity atherosclerosis in patients with and without diabetes
    • van der Feen C, Neijens FS, Kanters SD, Mali WP, Stolk RP, Banga JD (2002) Angiographic distribution of lower extremity atherosclerosis in patients with and without diabetes. Diabet Med 19(5):366-370
    • (2002) Diabet Med 1 , vol.9 , Issue.5 , pp. 366-370
    • Van Der Feen, C.1    Neijens, F.S.2    Kanters, S.D.3    Mali, W.P.4    Stolk, R.P.5    Banga, J.D.6
  • 85
    • 41649116922 scopus 로고    scopus 로고
    • Scaling of gene expression data allowing the comparison of different gene expression platforms
    • van Ruissen F, Schaaf GJ, Kool M, Baas F, Ruijter JM (2008) Scaling of gene expression data allowing the comparison of different gene expression platforms. Methods Mol Biol 387:169-183
    • (2008) Methods Mol Biol , vol.387 , pp. 169-183
    • Van Ruissen, F.1    Schaaf, G.J.2    Kool, M.3    Baas, F.4    Ruijter, J.M.5
  • 87
    • 37849039219 scopus 로고    scopus 로고
    • Identification of dein, a novel gene with high expression levels in stage ivs neuroblastoma
    • Voth H, Oberthuer A, Simon T, Kahlert Y, Berthold F, Fischer M (2007) Identification of DEIN, a novel gene with high expression levels in stage IVS neuroblastoma. Mol Cancer Res 5(12):276-1284
    • (2007) Mol Cancer Res , vol.5 , Issue.12 , pp. 276-1284
    • Voth, H.1    Oberthuer, A.2    Simon, T.3    Kahlert, Y.4    Berthold, F.5    Fischer, M.6
  • 89
    • 34250666153 scopus 로고    scopus 로고
    • Sampling the arabidopsis transcriptome with massively parallel pyrosequencing
    • Weber AP, Weber KL, Carr K, Wilkerson C, Ohlrogge JB (2007) Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol 144(1):32-42
    • (2007) Plant Physiol , vol.144 , Issue.1 , pp. 32-42
    • Weber, A.P.1    Weber, K.L.2    Carr, K.3    Wilkerson, C.4    Ohlrogge, J.B.5
  • 93
    • 33646253192 scopus 로고    scopus 로고
    • Combined cDNA array comparative genomic hybridization and serial analysis of gene expression analysis of breast tumor progression
    • Yao J, Weremowicz S, Feng B, Gentleman RC, Marks JR, Gelman R, Brennan C, Polyak K (2006) Combined cDNA array comparative genomic hybridization and serial analysis of gene expression analysis of breast tumor progression. Cancer Res 66(8):4065-4078
    • (2006) Cancer Res , vol.66 , Issue.8 , pp. 4065-4078
    • Yao, J.1    Weremowicz, S.2    Feng, B.3    Gentleman, R.C.4    Marks, J.R.5    Gelman, R.6    Brennan, C.7    Polyak, K.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.