메뉴 건너뛰기




Volumn 3, Issue 4, 2009, Pages

Efficient algorithms for genome-wide association study

Author keywords

ANOVA test; Association study; Permutation test

Indexed keywords

ANOVA (ANALYSIS OF VARIANCE); ANOVA TEST; BATCH MODES; BONFERRONI CORRECTION; CHI-SQUARE TESTS; COMPLEX PHENOTYPE; COMPUTATIONAL COSTS; EFFICIENT ALGORITHM; ERROR RATE; GENETIC EFFECTS; GENOME-WIDE ASSOCIATION; JOINT EFFECT; ORDERS OF MAGNITUDE; OTHER STATISTICS; PERMUTATION PROCEDURES; PERMUTATION TESTS; SINGLE NUCLEOTIDE POLYMORPHISMS; UNDERLYING MECHANISM; UPPER BOUND;

EID: 72449161607     PISSN: 15564681     EISSN: 1556472X     Source Type: Journal    
DOI: 10.1145/1631162.1631167     Document Type: Article
Times cited : (5)

References (35)
  • 1
    • 33748804424 scopus 로고    scopus 로고
    • A tutorial on statistical methods for population association studies
    • BALDING, D. J. 2006. A tutorial on statistical methods for population association studies. Nature Reviews Genetics 7, 10, 781-791.
    • (2006) Nature Reviews Genetics , vol.7 , Issue.10 , pp. 781-791
    • Balding, D.J.1
  • 4
    • 0033879555 scopus 로고    scopus 로고
    • The use of a genetic algorithm for simultaneous mapping of multiple interacting quantitative trait loci
    • CARLBORG, O., ANDERSSON, L., AND KINGHORN, B. 2000. The use of a genetic algorithm for simultaneous mapping of multiple interacting quantitative trait loci. Genetics 155, 4, 2003-2010.
    • (2000) Genetics , vol.155 , Issue.4 , pp. 2003-2010
    • Carlborg, O.1    Ersson, L.2    Kinghorn, B.3
  • 5
    • 2642583283 scopus 로고    scopus 로고
    • Mapping complex disease loci in whole-genome association studies
    • CARLSON, C. S., EBERLE,M. A., KRUGLYAK, L., AND NICKERSON, D. A. 2004. Mapping complex disease loci in whole-genome association studies. Nature 429, 446-452.
    • (2004) Nature , vol.429 , pp. 446-452
    • Carlson, C.S.1    Eberle, M.A.2    Kruglyak, L.3    Nickerson, D.A.4
  • 6
    • 33750337060 scopus 로고    scopus 로고
    • Comparison of SNP tagging methods using empirical data: Association study of 713 SNPs on chromosome 12q14.3-12q24.21 for asthma and total serum IgE in an African Caribbean population
    • CHI, P., DUGGAL, P., KAO,W.,MATHIAS, R. A., GRANT, A. V., STOCKTON,M. L., GARCIA, J. G. N., INGERGOLL, R. G., SCOTT, A. F., BENTY, T. H., BARNES, K. C., AND FALLIN, M. D. 2006. Comparison of SNP tagging methods using empirical data: Association study of 713 SNPs on chromosome 12q14.3-12q24.21 for asthma and total serum IgE in an African Caribbean population. Genet. Epidemiol. 30, 7, 609-619.
    • (2006) Genet. Epidemiol. , vol.30 , Issue.7 , pp. 609-619
    • Chi, P.1    Duggal, P.2    Kao, W.3    Mathias, R.A.4    Grant, A.V.5    Stockton, M.L.6    Garcia, J.G.N.7    Ingergoll, R.G.8    Scott, A.F.9    Benty, T.H.10    Barnes, K.C.11    Fallin, M.D.12
  • 7
    • 0034744364 scopus 로고    scopus 로고
    • Use of an artificial neural network to detect association between a disease and multiple marker genotypes
    • CURTIS, D., NORTH, B. V., AND SHAM, P. C. 2001. Use of an artificial neural network to detect association between a disease and multiple marker genotypes. Ann. Hum. Genet. 65, 95-107.
    • (2001) Ann. Hum. Genet. , vol.65 , pp. 95-107
    • Curtis, D.1    North, B.V.2    Sham, P.C.3
  • 8
    • 0036245218 scopus 로고    scopus 로고
    • Multifactorial genetics: Mapping and analysis of quantitative trait loci in experimental populations
    • DOERGE, R. W. 2002. Multifactorial genetics: Mapping and analysis of quantitative trait loci in experimental populations. Nat. Rev. Genet. 3, 43-52.
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 43-52
    • Doerge, R.W.1
  • 11
    • 84860539286 scopus 로고    scopus 로고
    • Tag SNP selection in genotype data for maximizing SNP prediction accuracy
    • Oxford University Press
    • HALPERIN, E.,KIMMEL, G., AND SHAMIR, R. 2005. Tag SNP selection in genotype data for maximizing SNP prediction accuracy. In Proceedings of the ISMB. Oxford University Press.
    • (2005) Proceedings of the ISMB
    • Halperin, E.1    Kimmel, G.2    Shamir, R.3
  • 12
    • 0042881041 scopus 로고    scopus 로고
    • Mathematical multi-locus approaches to localizing complex human trait genes
    • HOH, J. AND OTT, J. 2003. Mathematical multi-locus approaches to localizing complex human trait genes. Nat. Rev. Genet. 4, 701-709.
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 701-709
    • Hoh, J.1    Ott, J.2
  • 13
    • 0034527775 scopus 로고    scopus 로고
    • Selecting SNPs in two-stage analysis of disease association data: A model-free approach
    • HOH, J., WILLE, A., ZEE, R., CHENG, S., REYNOLDS, R., LINDPAINTNER, K., AND OTT, J. 2000. Selecting SNPs in two-stage analysis of disease association data: A model-free approach. Ann. Hum. Genet. 64, 413-417.
    • (2000) Ann. Hum. Genet. , vol.64 , pp. 413-417
    • Hoh, J.1    Wille, A.2    Zee, R.3    Cheng, S.4    Reynolds, R.5    Lindpaintner, K.6    Ott, J.7
  • 17
    • 33745599582 scopus 로고    scopus 로고
    • A flexible computational framework for detecting, characterizing, and interpreting statistical patterns of epistasis in genetic studies of human disease susceptibility
    • MOORE, J. H., GILBERT, J. C., TSAI, C.-T., CHIANG, F.-T., HOLDEN, T., BARNEY, N., ANDWHITE, B. C. 2006. A flexible computational framework for detecting, characterizing, and interpreting statistical patterns of epistasis in genetic studies of human disease susceptibility. J. Theoret. Biol. 241, 2, 252-261.
    • (2006) J. Theoret. Biol. , vol.241 , Issue.2 , pp. 252-261
    • Moore, J.H.1    Gilbert, J.C.2    Tsai, C.-T.3    Chiang, F.-T.4    Holden, T.5    Barney, N.6    White, B.C.7
  • 18
    • 0035014774 scopus 로고    scopus 로고
    • Detection of closely linked multiple quantitative trait loci using a genetic algorithm
    • NAKAMICHI, R., UKAI, Y., AND KISHINO, H. 2001. Detection of closely linked multiple quantitative trait loci using a genetic algorithm. Genetics 158, 1, 463-475.
    • (2001) Genetics , vol.158 , Issue.1 , pp. 463-475
    • Nakamichi, R.1    Ukai, Y.2    Kishino, H.3
  • 19
    • 0035084663 scopus 로고    scopus 로고
    • A combinatorial partitioning method to identify multilocus genotypic partitions that predict quantitative trait variation
    • NELSON, M. R., KARDIA, S. L., FERRELL, R. E., AND SING, C. F. 2001. A combinatorial partitioning method to identify multilocus genotypic partitions that predict quantitative trait variation. Gen. Res. 11, 458-470.
    • (2001) Gen. Res. , vol.11 , pp. 458-470
    • Nelson, M.R.1    Kardia, S.L.2    Ferrell, R.E.3    Sing, C.F.4
  • 20
    • 0034084676 scopus 로고    scopus 로고
    • Selective genotyping with epistasis can be utilized for a major quantitative trait locus mapping in hypertension in rats
    • OHNO, Y., TANASE, H., NABIKA, T., OTSUKA, K., SASAKI, T., SUZAWA, T., MORII, T., YAMORI, Y., AND SARUTA, T. 2000. Selective genotyping with epistasis can be utilized for a major quantitative trait locus mapping in hypertension in rats. Genetics 155, 785-792.
    • (2000) Genetics , vol.155 , pp. 785-792
    • Ohno, Y.1    Tanase, H.2    Nabika, T.3    Otsuka, K.4    Sasaki, T.5    Suzawa, T.6    Morii, T.7    Yamori, Y.8    Saruta, T.9
  • 22
    • 0035227182 scopus 로고    scopus 로고
    • Classification methods for confronting heterogeneity
    • PROVINCE, M. A., SHANNON, W. D., AND RAO, D. C. 2001. Classification methods for confronting heterogeneity. Adv. Genet. 42, 273-286.
    • (2001) Adv. Genet. , vol.42 , pp. 273-286
    • Province, M.A.1    Shannon, W.D.2    Rao, D.C.3
  • 23
    • 0034973569 scopus 로고    scopus 로고
    • Multifactor-dimensionality reduction reveals high-order interactions among estrogenmetabolism genes in sporadic breast cancer
    • RITCHIE, M. D., HAHN, L. W., ROODI, N., BAILEY, L. R., DUPONT, W. D., PARL, F. F., AND MOORE, J. H. 2001. Multifactor-dimensionality reduction reveals high-order interactions among estrogenmetabolism genes in sporadic breast cancer. Amer. J. Hum. Gen. 69, 138-147.
    • (2001) Amer. J. Hum. Gen. , vol.69 , pp. 138-147
    • Ritchie, M.D.1    Hahn, L.W.2    Roodi, N.3    Bailey, L.R.4    Dupont, W.D.5    Parl, F.F.6    Moore, J.H.7
  • 24
    • 65449167833 scopus 로고    scopus 로고
    • Inferring missing genotypes in large SNP panels using fast nearest-neighbor searches over sliding windows
    • Oxford University Press
    • ROBERTS, A., MCMILLAN, L., WANG, W., PARKER, J., RUSYN, I., AND THREADGILL, D. 2007. Inferring missing genotypes in large SNP panels using fast nearest-neighbor searches over sliding windows. In Proceedings of ISMB. Oxford University Press.
    • (2007) Proceedings of ISMB
    • Roberts, A.1    McMillan, L.2    Wang, W.3    Parker, J.4    Rusyn, I.5    Threadgill, D.6
  • 29
    • 0035219978 scopus 로고    scopus 로고
    • Applications of neural networks for gene finding
    • SHERRIFF, A., AND OTT, J. 2001. Applications of neural networks for gene finding. Adv. Genet. 42, 287-297.
    • (2001) Adv. Genet. , vol.42 , pp. 287-297
    • Sherriff, A.1    Ott, J.2
  • 33
    • 0033680875 scopus 로고    scopus 로고
    • Use of classification trees for association studies
    • ZHANG, H. AND BONNEY, G. 2000. Use of classification trees for association studies. Genet. Epidemiol. 19, 323-332.
    • (2000) Genet. Epidemiol. , vol.19 , pp. 323-332
    • Zhang, H.1    Bonney, G.2
  • 34
    • 67650308781 scopus 로고    scopus 로고
    • COE: A general approach for efficient genome-wide two-locus epistatic test in disease association study
    • Proceedings of the 13th Annual International Conference on Research in Computational Molecular Biology (RECOMB), Springer-Verlag, Berlin, Germany
    • ZHANG, X., PAN, F., XIE, Y., ZOW, F., AND WANG, W. 2009a. COE: A general approach for efficient genome-wide two-locus epistatic test in disease association study. In Proceedings of the 13th Annual International Conference on Research in Computational Molecular Biology (RECOMB). Lecture Notes in Computer Science, vol.5541, Springer-Verlag, Berlin, Germany.
    • (2009) Lecture Notes in Computer Science , vol.5541
    • Zhang, X.1    Pan, F.2    Xie, Y.3    Zow, F.4    Wang, W.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.