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Volumn 5541 LNBI, Issue , 2009, Pages 253-269

COE: A general approach for efficient genome-wide two-locus epistasis test in disease association study

Author keywords

[No Author keywords available]

Indexed keywords

BRUTE-FORCE APPROACH; COMPLEX DISEASE; CONVEX FUNCTIONS; GENE-GENE INTERACTION; GENERAL APPROACH; GENETIC ANALYSIS; GENOME-WIDE ASSOCIATION; HIGH DENSITY; INDEXING STRUCTURES; OPTIMALITY; ORDERS OF MAGNITUDE; PERFORMANCE IMPROVEMENTS; PERMUTATION TESTS; SINGLE NUCLEOTIDE POLYMORPHISMS; UPPER BOUND;

EID: 67650308781     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-02008-7_19     Document Type: Conference Paper
Times cited : (13)

References (36)
  • 1
    • 84869354090 scopus 로고    scopus 로고
    • http://www.fnih.org/GAIN2/home-new.shtml
  • 2
    • 84869354089 scopus 로고    scopus 로고
    • http://www.gnf.org/
  • 3
    • 84869368158 scopus 로고    scopus 로고
    • http://www.jax.org/
  • 4
    • 33748804424 scopus 로고    scopus 로고
    • A tutorial on statistical methods for population association studies
    • Balding, D.J.: A tutorial on statistical methods for population association studies. Nature Reviews Genetics 7(10), 781-791 (2006)
    • (2006) Nature Reviews Genetics , vol.7 , Issue.10 , pp. 781-791
    • Balding, D.J.1
  • 5
    • 0042921461 scopus 로고    scopus 로고
    • Multilocus statistics to uncover epistasis and heterogeneity in complex diseases: Revisiting a set of multiple sclerosis data
    • Bohringer, S., Hardt, C., Miterski, B., Steland, A., Epplen, J.T.: Multilocus statistics to uncover epistasis and heterogeneity in complex diseases: revisiting a set of multiple sclerosis data. European Journal of Human Genetics 11, 573-584 (2003)
    • (2003) European Journal of Human Genetics , vol.11 , pp. 573-584
    • Bohringer, S.1    Hardt, C.2    Miterski, B.3    Steland, A.4    Epplen, J.T.5
  • 7
    • 0033879555 scopus 로고    scopus 로고
    • The use of a genetic algorithm for simultaneous mapping of multiple interacting quantitative trait loci
    • Carlborg, O., Andersson, L., Kinghom, B.: The use of a genetic algorithm for simultaneous mapping of multiple interacting quantitative trait loci. Genetics 155, 2003-2010 (2000)
    • (2000) Genetics , vol.155 , pp. 2003-2010
    • Carlborg, O.1    Andersson, L.2    Kinghom, B.3
  • 8
    • 2642583283 scopus 로고    scopus 로고
    • Mapping complex disease loci in whole-genome association studies
    • Carlson, C.S., Eberle, M.A., Kruglyak, L., Nickerson, D.A.: Mapping complex disease loci in whole-genome association studies. Nature 429, 446-452 (2004)
    • (2004) Nature , vol.429 , pp. 446-452
    • Carlson, C.S.1    Eberle, M.A.2    Kruglyak, L.3    Nickerson, D.A.4
  • 9
    • 33750337060 scopus 로고    scopus 로고
    • Comparison of snp tagging methods using empirical data: Association study of 713 snps on chromosome 12q14.3-12q24.21 for asthma and total serum ige in an african caribbean population
    • Chi, P.B., et al.: Comparison of snp tagging methods using empirical data: association study of 713 snps on chromosome 12q14.3-12q24.21 for asthma and total serum ige in an african caribbean population. Genet. Epidemiol. 30(7), 609-619 (2006)
    • (2006) Genet. Epidemiol , vol.30 , Issue.7 , pp. 609-619
    • Chi, P.B.1
  • 10
    • 0036797562 scopus 로고    scopus 로고
    • Epistasis: What it means, what it doesn't mean, and statistical methods to detect it in humans
    • Cordell, H.J.: Epistasis: what it means, what it doesn't mean, and statistical methods to detect it in humans. Human Molecular Genetics 11(20), 2463-2468 (2002)
    • (2002) Human Molecular Genetics , vol.11 , Issue.20 , pp. 2463-2468
    • Cordell, H.J.1
  • 11
    • 0036245218 scopus 로고    scopus 로고
    • Multifactorial genetics: Mapping and analysis of quantitative trait loci in experimental populations
    • Doerge, R.W.: Multifactorial genetics: Mapping and analysis of quantitative trait loci in experimental populations. Nature Reviews Genetics 3, 43-52 (2002)
    • (2002) Nature Reviews Genetics , vol.3 , pp. 43-52
    • Doerge, R.W.1
  • 12
    • 38349134867 scopus 로고    scopus 로고
    • Exploration of gene-gene interaction effects using entropy-based methods
    • Dong, C., et al.: Exploration of gene-gene interaction effects using entropy-based methods. European Journal of Human Genetics 16, 229-235 (2008)
    • (2008) European Journal of Human Genetics , vol.16 , pp. 229-235
    • Dong, C.1
  • 13
    • 3242703033 scopus 로고    scopus 로고
    • New treatment options for colorectal cancer
    • Erlichman, C., Sargent, D.J.: New treatment options for colorectal cancer. N. Engl. J. Med. 351, 391-392 (2004)
    • (2004) N. Engl. J. Med , vol.351 , pp. 391-392
    • Erlichman, C.1    Sargent, D.J.2
  • 15
    • 84860539286 scopus 로고    scopus 로고
    • Tag snp selection in genotype data for maximizing snp prediction accuracy
    • Halperin, E., Kimmel, G., Shamir, R.: Tag snp selection in genotype data for maximizing snp prediction accuracy. In: Proc. ISMB (2005)
    • (2005) Proc. ISMB
    • Halperin, E.1    Kimmel, G.2    Shamir, R.3
  • 16
    • 33645825830 scopus 로고    scopus 로고
    • A common genetic variant is associated with adult and childhood obesity
    • Herbert, A., et al.: A common genetic variant is associated with adult and childhood obesity. Science 312, 279-284 (2006)
    • (2006) Science , vol.312 , pp. 279-284
    • Herbert, A.1
  • 17
    • 0042881041 scopus 로고    scopus 로고
    • Mathematical multi-locus approaches to localizing complex human trait genes
    • Hoh, J., Ott, J.: Mathematical multi-locus approaches to localizing complex human trait genes. Nature Reviews Genetics 4, 701-709 (2003)
    • (2003) Nature Reviews Genetics , vol.4 , pp. 701-709
    • Hoh, J.1    Ott, J.2
  • 18
    • 1542290090 scopus 로고    scopus 로고
    • B cell response to tumor antigens is associated with depletion of b progenitors in murine colocarcinoma
    • Kirman, I., Huang, E.H., Whelan, R.L.: B cell response to tumor antigens is associated with depletion of b progenitors in murine colocarcinoma. Surgery 135, 313-318 (2004)
    • (2004) Surgery , vol.135 , pp. 313-318
    • Kirman, I.1    Huang, E.H.2    Whelan, R.L.3
  • 19
    • 0035084663 scopus 로고    scopus 로고
    • A combinatorial partitioning method to identify multilocus genotypic partitions that predict quantitative trait variation
    • Nelson, M.R., Kardia, S.L., Ferrell, R.E., Sing, C.F.: A combinatorial partitioning method to identify multilocus genotypic partitions that predict quantitative trait variation. Genome Research 11, 458-470 (2001)
    • (2001) Genome Research , vol.11 , pp. 458-470
    • Nelson, M.R.1    Kardia, S.L.2    Ferrell, R.E.3    Sing, C.F.4
  • 20
    • 18744407845 scopus 로고    scopus 로고
    • Functional snps in the lymphotoxin-alpha gene that are associated with susceptibility to myocardial infarction
    • Ozaki, K., et al.: Functional snps in the lymphotoxin-alpha gene that are associated with susceptibility to myocardial infarction. Nat. Genet. 32, 650-654 (2002)
    • (2002) Nat. Genet , vol.32 , pp. 650-654
    • Ozaki, K.1
  • 22
    • 0034973569 scopus 로고    scopus 로고
    • Multifactor-dimensionality reduction reveals high-order interactions among estrogenmetabolism genes in sporadic breast cancer
    • Ritchie, M.D., Hahn, L.W., Roodi, N., Bailey, L.R., Dupont, W.D., Parl, F.F., Moore, J.H.: Multifactor-dimensionality reduction reveals high-order interactions among estrogenmetabolism genes in sporadic breast cancer. American Journal of Human Genetics 69, 138-147 (2001)
    • (2001) American Journal of Human Genetics , vol.69 , pp. 138-147
    • Ritchie, M.D.1    Hahn, L.W.2    Roodi, N.3    Bailey, L.R.4    Dupont, W.D.5    Parl, F.F.6    Moore, J.H.7
  • 23
    • 65449167833 scopus 로고    scopus 로고
    • Inferring missing genotypes in large snp panels using fast nearest-neighbor searches over sliding windows
    • Roberts, A., McMillan, L., Wang, W., Parker, J., Rusyn, I., Threadgill, D.: Inferring missing genotypes in large snp panels using fast nearest-neighbor searches over sliding windows. In: Proc. ISMB (2007)
    • (2007) Proc. ISMB
    • Roberts, A.1    McMillan, L.2    Wang, W.3    Parker, J.4    Rusyn, I.5    Threadgill, D.6
  • 24
    • 0037370359 scopus 로고    scopus 로고
    • The genome era begins
    • Roses, A.: The genome era begins. Nat. Genet. 33(suppl. 2), 217 (2003)
    • (2003) Nat. Genet , vol.33 , Issue.SUPPL. 2 , pp. 217
    • Roses, A.1
  • 25
    • 0242468125 scopus 로고    scopus 로고
    • Five new mouse susceptibility to colon cancer loci, scc11-scc15
    • Ruivenkamp, C.A., Csikos, T., Klous, A.M., van Wezel, T., Demant, P.: Five new mouse susceptibility to colon cancer loci, scc11-scc15. Oncogene. 22, 7258-7260 (2003)
    • (2003) Oncogene , vol.22 , pp. 7258-7260
    • Ruivenkamp, C.A.1    Csikos, T.2    Klous, A.M.3    van Wezel, T.4    Demant, P.5
  • 26
    • 34249888775 scopus 로고    scopus 로고
    • Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels
    • Saxena, R., et al.: Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels. Science 316, 1331-1336 (2007)
    • (2007) Science , vol.316 , pp. 1331-1336
    • Saxena, R.1
  • 27
    • 34547625955 scopus 로고    scopus 로고
    • Genome-wide association scan shows genetic variants in the fto gene are associated with obesity-related traits
    • Scuteri, A., et al.: Genome-wide association scan shows genetic variants in the fto gene are associated with obesity-related traits. PLoS Genet. 3(7) (2007)
    • (2007) PLoS Genet , vol.3 , Issue.7
    • Scuteri, A.1
  • 30
    • 23644434473 scopus 로고    scopus 로고
    • Multiple locus linkage analysis of genomewide expression in yeast
    • Storey, J., Akey, J., Kruglyak, L.: Multiple locus linkage analysis of genomewide expression in yeast. PLoS Biology 8, e267 (2005)
    • (2005) PLoS Biology , vol.8
    • Storey, J.1    Akey, J.2    Kruglyak, L.3
  • 32
    • 27644585884 scopus 로고    scopus 로고
    • Genetic variation in laboratory mice
    • Wade, C.M., Daly, M.J.: Genetic variation in laboratory mice. Nat. Genet. 3737, 1175-1180 (2005)
    • (2005) Nat. Genet , vol.3737 , pp. 1175-1180
    • Wade, C.M.1    Daly, M.J.2
  • 33
    • 34748830310 scopus 로고    scopus 로고
    • A common variant of hmga2 is associated with adult and childhood height in the general population
    • Weedon, M.N., et al.: A common variant of hmga2 is associated with adult and childhood height in the general population. Nat. Genet. 39, 1245-1250 (2007)
    • (2007) Nat. Genet , vol.39 , pp. 1245-1250
    • Weedon, M.N.1
  • 35
    • 67650296214 scopus 로고    scopus 로고
    • Zhang, X., Zou, F.,Wang, W.: FastChi: an efficient algorithm for analyzing gene-gene interactions. In: PSB (2009)
    • Zhang, X., Zou, F.,Wang, W.: FastChi: an efficient algorithm for analyzing gene-gene interactions. In: PSB (2009)
  • 36
    • 20544440135 scopus 로고    scopus 로고
    • An entropy-based statistic for genomewide association studies
    • Zhao, J., Boerwinkle, E., Xiong, M.: An entropy-based statistic for genomewide association studies. Am. J. Hum. Genet. 77, 27-40 (2005)
    • (2005) Am. J. Hum. Genet , vol.77 , pp. 27-40
    • Zhao, J.1    Boerwinkle, E.2    Xiong, M.3


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