Long range interaction of cis-DNA elements mediated by architectural transcription factor Bach1

Genes to Cells

Volumn 4, Issue 11, 1999, Pages 643-655

  Yoshida, Chikashi ^a,b   Tokumasu, Fuyuki ^c   Hohmura, Ken I ^c   Bungert, Jörg ^d,e   Hayashi, Norio ^a   Nagasawa, Toshiro ^b   Engel, James Douglas ^d   Yamamoto, Masayuki ^b   Takeyasu, Kunio ^c   Igarashi, Kazuhiko ^a,f  

^a TOHOKU UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^b UNIVERSITY OF TSUKUBA   (Japan)

^c KYOTO UNIVERSITY   (Japan)

^d NORTHWESTERN UNIVERSITY   (United States)

^e UNIVERSITY OF FLORIDA   (United States)

^f HIROSHIMA UNIV SCHOOL OF MEDICINE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BETA GLOBIN; DNA; LEUCINE ZIPPER PROTEIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR BACH 1; TRANSCRIPTION FACTOR BTB; TRANSCRIPTION FACTOR POZ; UNCLASSIFIED DRUG;

ARTICLE; CHROMATIN STRUCTURE; DNA CONFORMATION; GENE EXPRESSION REGULATION; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; PROTEIN DOMAIN; REGULATOR GENE; VERTEBRATE;

EID: 6744219613     PISSN: 13569597     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2443.1999.00291.x     Document Type: Article

References (47)

1. Ahmad, K.F., Engel, C.K. & Prive, G.G. (1998) Crystal structure of the BTB domain from PLZF. Proc. Natl. Acad. Sci. USA 95, 12123-12128.
2. Albagli, O., Dhordain, P., Deweindt, C., Lecocq, G. & Leprince, D. (1995) The BTB/POZ domain: a new protein-protein interaction motif common to DNA- and actin-binding proteins. Cell Growth Differ. 6, 1193-1198.
3. Andrews, N.C., Kotkow, K.J., Ney, P.A., Erdjument-Bromage, H., Tempst, P. & Orkin, S.H. (1993) The ubiquitous subunit of erythroid transcription factor NF-E2 is a small basic-leucine zipper protein related to the v-maf oncogene. Proc. Natl. Acad. Sci. USA 90, 11488-11492.
4. Aravind, L. & Koonin, E.V. (1999) Fold prediction and evolutionary analysis of the POZ domain: structural and evolutionary relationship with the potassium channel tetramerization domain. J. Mol. Biol. 285, 1353-1361.
5. Bardwell, V.J. & Treisman, R. (1994) The POZ domain: a conserved protein-protein interaction motif. Genes Dev. 8, 1664-1677.
6. Blackwood, E.M. & Kadonaga, J.T. (1998) Going the distance: a current view of enhancer action. Science 281, 61-63.
7. Bungert, J., Dave, U., Lim, K.-C., et al. (1995) Synergistic regulation of human β-globin gene switching by locus control region elements HS3 and HS4. Genes Dev. 9, 3083-3096.
8. Bungert, J., Tanimoto, K., Patel, S., Liu, Q., Fear, M. & Engel, J.D. (1999) Hypersensitive site 2 specifies a unique function within the human β-globin LCR to stimulate globin gene transcription. Mol. Cell. Biol. 19, 3062-3072.
9. Bustamante, C., Erie, D.A. & Keller, D. (1994) Biochemical and structural applications of scanning force microscopy. Curr. Opin. Struct. Biol. 4, 750-760.
10. Chervitz, S.A., Aravind, L., Sherlock, G., et al. (1998) Compostition of the complete protein sets of worm and yeast: orthology and divergence. Science 282, 2022-2028.
11. Chen, Z., Brand, N.J., Chen, A., et al. (1993) Fusion between a novel Kruppel-like zinc finger gene and the retinoic acid receptor-α locus due to a variant t(11;17) translocation associated with acute promyelocytic leukemia. EMBO J. 12, 1161-1167.
12. Choi, O.-R. & Engel, J.D. (1988) Developmental regulation of β-globin gene switching. Cell 55, 17-26.
13. Deweindt, C., Albagli, O., Bernardin, F., et al. (1995) The LAZ3/BCL6 oncogene encodes a sequence-specific transcriptional inhibitor: a novel function for the BTB/POZ domain as an autonomous repressing domain. Cell Growth Differ. 12, 1495-1503.
14. Dhordain, P., Albagli, O., Ansieau, S., et al. (1995) The BTB/ POZ domain targets the LAZ3/BCL6 oncoprotein to nuclear dots and mediates homomerisation in vivo. Oncogene 11, 2689-2697.
15. Dong, S., Zhu, J., Reid, A., et al. (1996) Amino-terminal protein-protein interaction motif (POZ-domain) is responsible for activities of the promyelocytic leukemia zinc fingerretinoic acid receptor-α fusion protein. Proc. Natl. Acad. Sci. USA 93, 3624-3629.
16. Ellis, J., Tan-Un, K.C., Harper, A., et al. (1996) A dominant chromatin-opening activity in 5′ hypersensitive site 3 of the human β-globin locus control region. EMBO J. 15, 562-568.
17. Ellis, J., Pasceri, P., Tan-Un, K.C., et al. (1997) Evaluation of β-globin gene therapy constructs in single copy transgenic mice. Nucl. Acids Res. 25, 1296-1302.
18. Forrester, W.C., Thompson, C., Elder, J.T. & Groudine, M. (1986) A developmentally stable chromatin structure in the human β-globin gene cluster. Proc. Natl. Acad. Sci. USA 83, 1359-1363.
19. Forrester, W.C., Epner, E., Driscoll, M.C., et al. (1990) A deletion of the human β-globin locus activation region causes a major alteration in chromatin structure and replication across the entire β-globin locus. Genes Dev. 4, 1637-1649.
20. Fraser, P., Pruzina, S., Antoniou, M. & Grosveld, F. (1993) Each hypersensitive site of the human β-globin locus control region confers a different developmental pattern of expression on the globin genes. Genes Dev. 7, 106-113.
21. Gerasimova, T.I. & Corces, V.G. (1998) Polycomb and trithorax group proteins mediate the function of a chromatin insulator. Cell 92, 511-521.
22. Grosveld, F., Blom van Assendelft, G., Greaves, D.R. & Kollias, G. (1987) Position-independent, high-level expression of the β-globin gene in transgenic mice. Cell 51, 975-985.
23. Igarashi, K., Kataoka, K., Itoh, K., Hayashi, N., Nishizawa, M. & Yamamoto, M. (1994) Regulation of transcription by dimerization of erythroid factor NF-E2 p45 with small Maf proteins. Nature 367, 568-572.
24. Igarashi, K., Hoshino, H., Muto, A., et al. (1998) Multivalent DNA binding complex generated by small Maf and Bach1 as a possible biochemical basis for β-globin locus control region complex. J. Biol. Chem. 273, 11783-11790.
25. Kataoka, K., Noda, M. & Nishizawa, M. (1994) Maf nuclear oncoprotein recognizes sequences related to an AP-1 site and forms heterodimers with both Fos and Jun. Mol. Cell. Biol. 14, 700-712.
26. Katsani, K.R., Hajibagheri, M.A.N. & Verrijzer, C.P. (1999) Cooperative DNA binding by GAGA transcription factor requires the conserved BTB/POZ domain and reorganizes promoter topology. EMBO J. 18, 698-708.
27. Kawauchi, S., Takahashi, S., Nakajima, O., et al. (1999) Regulation of lens fiber cell differentiation by transcription factor c-Maf. J. Biol Chem. 274, 19254-19260.
28. Kim, J.I., Li, T., Ho, I., Grusby, M.J. & Glimcher, L.H. (1999) Requirement for the c-Maf transcription factor in crystallin gene regulation and lens development. Proc. Natl. Acad. Sci. USA 96, 3781-3785.
29. Kim, S.-K. & Wang, J.C. (1999) Gene silencing via protein-mediated subcellular localization of DNA. Proc. Natl. Acad. Sci. USA 96, 8557-8561.
30. Kobayashi, A., Ito, E., Toki, T., et al. (1999) Molecular cloning and functional characterization of a new Capínícollar family transcription factor Nrf3. J. Biol. Chem. 274, 6443-6452.
31. Kotkow, K.J. & Orkin, S.H. (1995) Dependence of globin gene expression in mouse erythroleukemia cells on the NF-E2 heterodimer. Mol. Cell. Biol. 15, 4640-4647.
32. Li, J.Y., English, M.A., Ball, H.J., Yeyati, P.L., Waxman, S. & Licht, J.D. (1997) Sequence-specific DNA binding and transcriptional regulation by the promyelocytic leukemia zinc finger protein. J. Biol. Chem. 272, 22447-22455.
33. Mastrangelo, I.A., Courey A.J., Wall, J.S., Jackson, S.P. & Hough, P.V.C. (1991) DNA looping and Sp1 multimer links: a mechanism for transcriptional synergism and enhancement. Proc. Natl. Acad. Sci. USA 88, 5670-5674.
34. Milot, E., Strouboulis, J., Trimborn, T., et al. (1996) Heterochromatin effects on the frequency and duration of LCR-mediated gene transcription. Cell 87, 105-114.
35. Muto, A., Hoshino, H., Madisen, L., et al. (1998) Identification of Bach2 as a B-cell-specific partner for small Maf proteins that negatively regulate the immunoglobulin heavy chain gene 3′ enhancer. EMBO J. 17, 5734-5743.
36. Nettikadan, S., Tokumasu, F. & Takeyasu, K. (1996) Quantitative analysis of the transcription factor AP2 binding to DNA by atomic force microscopy. Biochem. Biophys. Res. Commun. 226, 645-649.
37. Ohtsuki, S. & Levine, M. (1998) GAGA mediates the enhancer blocking activity of the eve promoter in the Drosophila embryo. Genes Dev. 12, 3325-3330.
38. Okada, M. & Hirose, S. (1998) Chromatin remodeling mediated by Drosophila GAGA factor and ISWI activates fushi tarazu gene transcription in vitro. Mol. Cell. Biol. 18, 2455-2461.
39. Oyake, T., Itoh, K., Motohashi, H., et al. (1996) Bach proteins belong to a novel family of BTB-basic leucine zipper transcription factors that interact with MafK and regulate transcription through the NF-E2 site. Mol. Cell. Biol. 16, 6083-6095.
40. Sieweke, M.H., Tekotte, H., Frampton, J. & Graf, T. (1996) MafB is an interaction partner and repressor of Ets-1 that inhibits erythroiddifferentiation. Cell 85, 49-60.
41. Toki, T., Itoh, J., Kitazawa, J., et al. (1997) Human small Maf proteins form heterodimers with CNC family transcription factors and recognize NF-E2 motif. Oncogene 14, 1901-1910.
42. Tsukiyama, T., Decker, P.B. & Wu, C. (1994) ATP-dependent nucleosome disruption at a heat-shock promoter mediated by binding of GAGA transcription factor. Nature 367, 525-532.
43. Tuan, D., Solomon, W., Li, Q. & London, I.M. (1985) The β-like-globin gene domain in human erythroid cells. Proc. Natl. Acad. Sci. USA 82, 6384-6388.
44. Wijgerde, M., Grosveld, F. & Fraser, P. (1995) Transcription complex stability and chromatin dynamics in vivo. Nature 377, 209-213.
45. Wyman, C., Grotkopp, E., Bustamante, C. & Nelson, H.C.M. (1995) Determination of heat-shock transcription factor 2 stoichiometry at looped DNA complexes using scanning force microscopy. EMBO J. 14, 117-123.
46. Ye, B.H., Lista, F., Coco, F.L., et al. (1993) Alterations of a zinc finger-encoding gene, BCL-6, in diffuse large-cell lymphoma. Science 262, 747-750.
47. Zollman, S., Godt, D., Prive, G.G., Couderc, J.-L. & Laski, F.A. (1994) The BTB domain, found primarily in zinc finger proteins, defines an evolutionarily conserved family that includes several developmentally regulated genes in Drosophila. Proc. Natl. Acad. Sci. USA 91, 10717-10721.