Chromosomal rearrangements during human epidermal keratinocyte differentiation

Journal of Cellular Physiology

Volumn 221, Issue 1, 2009, Pages 139-146

  Marella, Narasimharao V ^a,c   Seifert, Brandon ^a   Nagarajan, Priyadharsini ^b   Sinha, Satrajit ^b   Berezney, Ronald ^a  

^a UNIVERSITY AT BUFFALO   (United States)

^b UNIVERSITY AT BUFFALO   (United States)

^c CANCER GENETICS INC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CELL DIFFERENTIATION; CELL RENEWAL; CHROMOSOME 18; CHROMOSOME 19; CHROMOSOME PAINTING; CONTROLLED STUDY; FLUORESCENCE IN SITU HYBRIDIZATION; GENE EXPRESSION; GENOMICS; HUMAN; HUMAN CELL; KERATINOCYTE; PRIORITY JOURNAL; CELL LINE; CELL NUCLEUS; CHROMOSOME POSITIONING; CYTOLOGY; EPIDERMIS; HUMAN CHROMOSOME; METABOLISM; ORGANELLE SIZE;

BIOLOGICAL MARKER;

BIOLOGICAL MARKERS; CELL DIFFERENTIATION; CELL LINE; CELL NUCLEUS; CHROMOSOME POSITIONING; CHROMOSOMES, HUMAN; CHROMOSOMES, HUMAN, PAIR 18; CHROMOSOMES, HUMAN, PAIR 19; EPIDERMIS; HUMANS; IN SITU HYBRIDIZATION, FLUORESCENCE; KERATINOCYTES; ORGANELLE SIZE;

EID: 69249227488     PISSN: 00219541     EISSN: None     Source Type: Journal    
DOI: 10.1002/jcp.21855     Document Type: Article

References (85)

1. Abts HF, Welss T, Scheuring S, Scott FL, Irving JA, Michel G, Bird PI, Ruzicka T. 2001. Sequence, organization, chromosomal localization, and alternative splicing of the human serine protease inhibitor gene hurpin (PI13) which is upregulated in psoriasis. DNA Cell Biol 20:123-131. (Pubitemid 34248241)
2. Banks-Schlegel S, Green H. 1981. Involucrin synthesis and tissue assembly by keratinocytes in natural and cultured human epithelia. J Cell Biol 90:732-737. (Pubitemid 12254931)
3. Bartova E, Kozubek S, Kozubek M, Jirsova P, Lukasova E, Skalnikova M, Buchnickova K. 2000. The influence of the cell cycle, differentiation and irradiation on the nuclear location of the abl, bcr and c-myc genes in human leukemic cells. Leuk Res 24:233-241. (Pubitemid 30083945)
4. Bartova E, Krejci J, Harnicarova A, Kozubek S. 2008. Differentiation of human embryonic stem cells induces condensation of chromosome territories and formation of heterochromatin protein 1 foci. Differentiation 76:24-32.
5. Bazzi H, Fantauzzo KA, Richardson GD, Jahoda CA, Christiano AM. 2007. Transcriptional profiling of developing mouse epidermis reveals novel patterns of coordinated gene expression. Dev Dyn 236:961-970. (Pubitemid 46641337)
6. Beil M, Durschmied D, Paschke S, Schreiner B, Nolte U, Bruel A, Irinopoulou T. 2002. Spatial distribution patterns of interphase centromeres during retinoic acid-induced differentiation of promyelocytic leukemia cells. Cytometry 47:217-225. (Pubitemid 34250697)
7. Bhattacharya S, Acharya R, Pliss A, Malyavantham KS, Berezney R. 2008. A Hybrid Registration Approach for Matching Genomic Structures in Multimodal Microscopic Images of Living Cells. Proceedings of the 2008 International Conference on Image Processing, Computer Vision, and Pattern Recognition 2: 217-221.
8. Bickmore WA, Chubb JR. 2003. Dispatch. Chromosome position: Now, where was I? Curr Biol 13:R357-R359.
9. Bickmore WA, Teague P. 2002. Influences of chromosome size, gene density and nuclear position on the frequency of constitutional translocations in the human population. Chromosome Res 10:707-715. (Pubitemid 36135550)
10. Bolzer A, Kreth G, Solovei I, Koehler D, Saracoglu K, Fauth C, Muller S, Eils R, Cremer C, Speicher MR, Cremer T. 2005. Three-dimensionalmaps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes. PLoS Biol 3:e157. (Pubitemid 40958405)
11. Boyce ST, Ham RG. 1983. Calcium-regulated differentiation of normal human epidermal keratinocytes in chemically defined clonal culture and serum-free serial culture. J Invest Dermatol 81:33s-40s.
12. Boyle S, Gilchrist S, Bridger JM, Mahy NL, Ellis JA, Bickmore WA. 2001. The spatial organization of human chromosomes within the nuclei of normal and emerin-mutant cells. Hum Mol Genet 10:211-219. (Pubitemid 32123979)
13. Bridger JM, Boyle S, Kill IR, Bickmore WA. 2000. Re-modelling of nuclear architecture in quiescent and senescent human fibroblasts. Curr Biol 10:149-152. (Pubitemid 30115746)
14. Cavalli G. 2007. Chromosome kissing. Curr Opin Genet Dev 17:443-450.
15. Chaly N, Munro SB, Swallow MA. 1996. Remodelling of the nuclear periphery during muscle cell differentiation in vitro. J Cell Biochem 62:76-89. (Pubitemid 26286284)
16. Chambeyron S, Bickmore WA. 2004. Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription. Genes Dev 18:1119-1130. (Pubitemid 38669033)
17. Chambeyron S, Da Silva NR, Lawson KA, Bickmore WA. 2005. Nuclear re-organisation of the Hoxb complex during mouse embryonic development. Development 132:2215-2223. (Pubitemid 40744480)
18. Craig JM, Bickmore WA. 1994. The distribution of CpG islands in mammalian chromosomes. Nat Genet 7:376-382.
19. Cremer T, Cremer C. 2001. Chromosome territories, nuclear architecture and gene regulation in mammalian cells. Nat Rev Genet 2:292-301. (Pubitemid 33674777)
20. Cremer M, von Hase J, Volm T, Brero A, Kreth G, Walter J, Fischer C, Solovei I, Cremer C, Cremer T. 2001. Non-random radial higher-order chromatin arrangements in nuclei of diploid human cells. Chromosome Res 9:541-567. (Pubitemid 33020681)
21. Cremer M, Kupper K, Wagler B, Wizelman L, von Hase J, Weiland Y, Kreja L, Diebold J, Speicher MR, Cremer T. 2003. Inheritance of gene density-related higher order chromatin arrangements in normal and tumor cell nuclei. J Cell Biol 162:809-820. (Pubitemid 37087721)
22. Croft JA, Bridger JM, Boyle S, Perry P, Teague P, Bickmore WA. 1999. Differences in the localization and morphology of chromosomes in the human nucleus. J Cell Biol 145:1119-1131. (Pubitemid 29293625)
23. Deloukas P, Schuler GD, Gyapay G, Beasley EM, Soderlund C, Rodriguez-Tome P, Hui L, Matise TC, McKusick KB, Beckmann JS, Bentolila S, Bihoreau M, Birren BB, Browne J, Butler A, Castle AB, Chiannilkulchai N, Clee C, Day PJ, Dehejia A, Dibling T, Drouot N, Duprat S, Fizames C, Fox S, Gelling S, Green L, Harrison P, Hocking R, Holloway E, Hunt S, Keil S, Lijnzaad P, Louis-Dit-Sully C, Ma J, Mendis A, Miller J, Morissette J, Muselet D, Nusbaum HC, Peck A, Rozen S, Simon D, Slonim DK, Staples R, Stein LD, Stewart EA, Suchard MA, Thangarajah T, Vega-Czarny N, Webber C, Wu X, Hudson J, Auffray C, Nomura N, Sikela JM, Polymeropoulos MH, James MR, Lander ES, Hudson TJ, Myers RM, Cox DR, Weissenbach J, Boguski MS, Bentley DR. 1998. A physical map of 30,000 human genes. Science 282:744-746. (Pubitemid 28489386)
24. Dietzel S, Zolghadr K, Hepperger C, Belmont AS. 2004. Differential large-scale chromatin compaction and intranuclear positioning of transcribed versus non-transcribed transgene arrays containing beta-globin regulatory sequences. J Cell Sci 117:4603-4614. (Pubitemid 39360084)
25. Dutrillaux B, Couturier J, Richer CL, Viegas-Pequignot E. 1976. Sequence of DNA replication in 277 R- and Q-bands of human chromosomes using a BrdU treatment. Chromosoma 58:51-61.
26. Eckert RL. 1989. Structure, function, and differentiation of the keratinocyte. Physiol Rev 69:1316-1346.
27. Eckert RL, Rorke EA. 1989. Molecular biology of keratinocyte differentiation. Environ Health Perspect 80:109-116.
28. Eckert RL, Welter JF. 1996. Epidermal keratinocytes-Genes and their regulation. Cell Death Differ 3:373-383.
29. Eckert RL, Crish JF, Banks EB, Welter JF. 1997a. The epidermis: Genes on-Genes off. J Invest Dermatol 109:501-509.
30. Eckert RL, Crish JF, Robinson NA. 1997b. The epidermal keratinocyte as a model for the study of gene regulation and cell differentiation. Physiol Rev 77:397-424. (Pubitemid 27184344)
31. Eckert RL, Crish JF, Efimova T, Dashti SR, Deucher A, Bone F, Adhikary G, Huang G, Gopalakrishnan R, Balasubramanian S. 2004. Regulation of involucrin gene expression. J Invest Dermatol 123:13-22.
32. Finlan LE, Sproul D, Thomson I, Boyle S, Kerr E, Perry P, Ylstra B, Chubb JR, Bickmore WA. 2008. Recruitment to the nuclear periphery can alter expression of genes in human cells. PLoS Genet 4:e1000039.
33. Francastel C, Schubeler D, Martin DI, Groudine M. 2000. Nuclear compartmentalization and gene activity. Nat Rev Mol Cell Biol 1:137-143.
34. Fraser P, Bickmore W. 2007. Nuclear organization of the genome and the potential for gene regulation. Nature 447:413-417. (Pubitemid 46816747)
35. Fuchs E. 1994. Epidermal differentiation and keratin gene expression. Princess Takamatsu Symp 24:290-302.
36. Fuchs E, Weber K. 1994. Intermediate filaments: Structure, dynamics, function, and disease. Annu Rev Biochem 63:345-382. (Pubitemid 24218637)
37. Gandarillas A, Davies D, Blanchard JM. 2000. Normal and c-Myc-promoted human keratinocyte differentiation both occur via a novel cell cycle involving cellular growth and endoreplication. Oncogene 19:3278-3289. (Pubitemid 30487414)
38. Green H. 1980. The keratinocyte as differentiated cell type. Harvey Lect 74:101-139.
39. Harnicarova A, Kozubek S, Pachernik J, Krejci J, Bartova E. 2006. Distinct nuclear arrangement of active and inactive c-myc genes in control and differentiated colon carcinoma cells. Exp Cell Res 312:4019-4035. (Pubitemid 44828047)
40. Hewitt SL, High FA, Reiner SL, Fisher AG, Merkenschlager M. 2004. Nuclear repositioning marks the selective exclusion of lineage-inappropriate transcription factor loci during T helper cell differentiation. Eur J Immunol 34:3604-3613. (Pubitemid 40012178)
41. Iatropoulos MJ, Williams GM. 1996. Proliferation markers. Exp Toxicol Pathol 48:175-181.
42. Jeppesen P, Turner BM. 1993. The inactive X chromosome in female mammals is distinguished by a lack of histone H4 acetylation, a cytogenetic marker for gene expression. Cell 74:281-289. (Pubitemid 23221704)
43. Kioussis D. 2005. Gene regulation: Kissing chromosomes. Nature 435:579-580.
44. Korenberg JR, Rykowski MC. 1988. Human genome organization: Alu, lines, and the molecular structure of metaphase chromosome bands. Cell 53:391-400.
45. Kosak ST, Groudine M. 2004. Gene order and dynamic domains. Science 306:644-647.
46. Kosak ST, Skok JA, Medina KL, Riblet R, Le Beau MM, Fisher AG, Singh H. 2002. Subnuclear compartmentalization of immunoglobulin loci during lymphocyte development. Science 296:158-162. (Pubitemid 34280078)
47. Kuroda M, Tanabe H, Yoshida K, Oikawa K, Saito A, Kiyuna T, Mizusawa H, Mukai K. 2004. Alteration of chromosome positioning during adipocyte differentiation. J Cell Sci 117:5897-5903. (Pubitemid 40123955)
48. Lanctot C, Kaspar C, Cremer T. 2007. Positioning of the mouse Hox gene clusters in the nuclei of developing embryos and differentiating embryoid bodies. Exp Cell Res 313:1449-1459. (Pubitemid 46507444)
49. LaSalle JM, Lalande M. 1996. Homologous association of oppositely imprinted chromosomal domains. Science 272:725-728. (Pubitemid 26000278)
50. Ling JQ, Li T, Hu JF, Vu TH, Chen HL, Qiu XW, Cherry AM, Hoffman AR. 2006. CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1. Science 312:269-272.
51. Lomvardas S, Barnea G, Pisapia DJ, Mendelsohn M, Kirkland J, Axel R. 2006. Interchromosomal interactions and olfactory receptor choice. Cell 126:403-413. (Pubitemid 44092961)
52. Marella NV, Bhattacharya S, Mukherjee L, Xu J, Berezney R. 2009a. Cell type specific chromosome territory organization in the interphase nucleus of normal and cancer cells. J Cell Physiol 221:130-138.
53. Marella NV, Seifert B, Nagarajan P, Niha S, Berezney R. 2009b. Chromosomal rearrangements during human epidermal keratinocyte differentiation. J Cell Physiol 221:139-146.
54. Martinez LA, Chen Y, Fischer SM, Conti CJ. 1999. Coordinated changes in cell cycle machinery occur during keratinocyte terminal differentiation. Oncogene 18:397-406. (Pubitemid 29060615)
55. Martou G, De Boni U. 2000. Nuclear topology of murine, cerebellar Purkinje neurons: Changes as a function of development. Exp Cell Res 256:131-139. (Pubitemid 30211175)
56. Matsui T, Hayashi-Kisumi F, Kinoshita Y, Katahira S, Morita K, Miyachi Y, Ono Y, Imai T, Tanigawa Y, Komiya T, Tsukita S. 2004. Identification of novel keratinocyte-secreted peptides dermokine-alpha/-beta and a new stratified epithelium-secreted protein gene complex on human chromosome 19q13.1. Genomics 84:384-397. (Pubitemid 38834175)
57. Micallef L, Belaubre F, Pinon A, Jayat-Vignoles C, Delage C, Charveron M, Simon A. 2008. Effects of extracellular calcium on the growth-differentiation switch in immortalized keratinocyte HaCaT cells compared with normal human keratinocytes. Exp Dermatol 18:143-151.
58. Misteli T. 2004. Spatial positioning; a new dimension in genome function. Cell 119:153-156. (Pubitemid 39360898)
59. Moffatt P, Salois P, St-Amant N, Gaumond MH, Lanctot C. 2004. Identification of a conserved cluster of skin-specific genes encoding secreted proteins. Gene 334:123-131. (Pubitemid 38902722)
60. Nagarajan P, Sinha S. 2008. Development of an inducible gene expression system for primary murine keratinocytes. J Dermatol Sci 49:73-84. (Pubitemid 350236710)
61. Nielsen JA, Hudson LD, Armstrong RC. 2002. Nuclear organization in differentiating oligodendrocytes. J Cell Sci 115:4071-4079.
62. Osborne CS, Chakalova L, Brown KE, Carter D, Horton A, Debrand E, Goyenechea B, Mitchell JA, Lopes S, Reik W, Fraser P. 2004. Active genes dynamically colocalize to shared sites of ongoing transcription. Nat Genet 36:1065-1071. (Pubitemid 41184467)
63. Parada L, Misteli T. 2002. Chromosome positioning in the interphase nucleus. Trends Cell Biol 12:425-432.
64. Parada LA, McQueen PG, Munson PJ, Misteli T. 2002. Conservation of relative chromosome positioning in normal and cancer cells. Curr Biol 12:1692-1697. (Pubitemid 35161925)
65. Parada LA, McQueen PG, Misteli T. 2004. Tissue-specific spatial organization of genomes. Genome Biol 5:R44.
66. Poumay Y, Leclercq-Smekens M. 1998. In Vitro models of epidermal differentiation. Folia Med (Plovdiv) 40:5-12.
67. Sacks PG, Parnes SM, Price JC, Risemberg H, Goldstein JC, Marko M, Parsons DF. 1985. In vitro modulation of differentiation by calcium in organ cultures of human and murine epithelial tissue. In Vitro Cell Dev Biol 21:99-107.
68. Schluter C, Duchrow M, Wohlenberg C, Becker MH, Key G, Flad HD, Gerdes J. 1993. The cell proliferation-associated antigen of antibody Ki-67: A very large, ubiquitous nuclear protein with numerous repeated elements, representing a new kind of cell cycle-maintaining proteins. J Cell Biol 123:513-522. (Pubitemid 23324910)
69. Skalnikova M, Kozubek S, Lukasova E, Bartova E, Jirsova P, Cafourkova A, Koutna I, Kozubek M. 2000. Spatial arrangement of genes, centromeres and chromosomes in human blood cell nuclei and its changes during the cell cycle, differentiation and after irradiation. Chromosome Res 8:487-499. (Pubitemid 30748983)
70. Solovei I, Cavallo A, Schermelleh L, Jaunin F, Scasselati C, Cmarko D, Cremer C, Fakan S, Cremer T. 2002. Spatial preservation of nuclear chromatin architecture during three-dimensional fluorescence in situ hybridization (3D-FISH). Exp Cell Res 276:10-23. (Pubitemid 34948347)
71. Spilianakis CG, Lalioti MD, Town T, Lee GR, Flavell RA. 2005. Interchromosomal associations between alternatively expressed loci. Nature 435:637-645. (Pubitemid 40825504)
72. Stanley JR, Yuspa SH. 1983. Specific epidermal protein markers are modulated during calcium-induced terminal differentiation. J Cell Biol 96:1809-1814.
73. Sun HB, Shen J, Yokota H. 2000. Size-dependent positioning of human chromosomes in interphase nuclei. Biophys J 79:184-190. (Pubitemid 30436736)
74. Tanabe H, Habermann FA, Solovei I, Cremer M, Cremer T. 2002. Non-random radial arrangements of interphase chromosome territories: Evolutionary considerations and functional implications. Mutat Res 504:37-45.
75. Terranova R, Sauer S, Merkenschlager M, Fisher AG. 2005. The reorganisation of constitutive heterochromatin in differentiating muscle requires HDAC activity. Exp Cell Res 310:344-356. (Pubitemid 41457339)
76. Tu CL, Chang W, Bikle DD. 2001. The extracellular calcium-sensing receptor is required for calcium-induced differentiation in human keratinocytes. J Biol Chem 276:41079-41085. (Pubitemid 37373262)
77. Tu CL, Oda Y, Komuves L, Bikle DD. 2004. The role of the calcium-sensing receptor in epidermal differentiation. Cell Calcium 35:265-273. (Pubitemid 38292370)
78. Ura H, Takeda F, Okochi H. 2004. An in vitro outgrowth culture system for normal human keratinocytes. J Dermatol Sci 35:19-28. (Pubitemid 38759737)
79. van Driel R, Fransz PF, Verschure PJ. 2003. The eukaryotic genome: A system regulated at different hierarchical levels. J Cell Sci 116:4067-4075. (Pubitemid 37337081)
80. Watt FM. 1983. Involucrin and other markers of keratinocyte terminal differentiation. J Invest Dermatol 81:100s-103s.
81. Williams RR, Azuara V, Perry P, Sauer S, Dvorkina M, Jorgensen H, Roix J, McQueen P, Misteli T, Merkenschlager M, Fisher AG. 2006. Neural induction promotes large-scale chromatin reorganisation of the Mash1 locus. J Cell Sci 119:132-140. (Pubitemid 43169306)
82. Xu M, Cook PR. 2008. The role of specialized transcription factories in chromosome pairing. Biochim Biophys Acta 1783:2155-2160.
83. Yu CC, Woods AL, Levison DA. 1992. The assessment of cellular proliferation by immunohistochemistry: A review of currently available methods and their applications. Histochem J 24:121-131.
84. Yuspa SH, Hennings H, Tucker RW, Jaken S, Kilkenny AE, Roop DR. 1988. Signal transduction for proliferation and differentiation in keratinocytes. Ann NY Acad Sci 548:191-196.
85. Zeitz MJ, Mukherjee L, Bhattacharya S, Xu J, Berezney R. 2009. A probabilistic model for the arrangement of a subset of human chromosome territories in WI38 human fibroblasts. J Cell Physiol 221:120-129.