-
1
-
-
0023660740
-
Affinity chromatographic purification of nucleosomes containing transcriptionally active DNA sequences
-
Allegra P, Sterner R, Clayton DF, Allfrey VG. 1987. Affinity chromatographic purification of nucleosomes containing transcriptionally active DNA sequences. J Mol Biol 196:379-388.
-
(1987)
J Mol Biol
, vol.196
, pp. 379-388
-
-
Allegra, P.1
Sterner, R.2
Clayton, D.F.3
Allfrey, V.G.4
-
2
-
-
78651162036
-
Acetylation and methylation of histones and their possible role in the regulation of RNA synthesis
-
Allfrey VG, Faulkner R, Mirsky AE. 1964. Acetylation and methylation of histones and their possible role in the regulation of RNA synthesis. Proc Natl Acad Sci USA 51:786-794.
-
(1964)
Proc Natl Acad Sci USA
, vol.51
, pp. 786-794
-
-
Allfrey, V.G.1
Faulkner, R.2
Mirsky, A.E.3
-
3
-
-
33646872978
-
Chromatin signatures of pluripotent cell lines
-
Azuara V, Perry P, Sauer S, Spivakov M, Jorgensen HF, John RM, Gouti M, Casanova M, Warnes G, Merkenschlager M, Fisher AG. 2006. Chromatin signatures of pluripotent cell lines. Nat Cell Biol 8:532-538.
-
(2006)
Nat Cell Biol
, vol.8
, pp. 532-538
-
-
Azuara, V.1
Perry, P.2
Sauer, S.3
Spivakov, M.4
Jorgensen, H.F.5
John, R.M.6
Gouti, M.7
Casanova, M.8
Warnes, G.9
Merkenschlager, M.10
Fisher, A.G.11
-
4
-
-
66149186985
-
Genomic location analysis by ChIP-Seq
-
Barski A, Zhao K. 2009. Genomic location analysis by ChIP-Seq. J Cell Biochem 107:11-18.
-
(2009)
J Cell Biochem
, vol.107
, pp. 11-18
-
-
Barski, A.1
Zhao, K.2
-
5
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K. 2007. High-resolution profiling of histone methylations in the human genome. Cell 129:823-837.
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
6
-
-
0037172993
-
Methylation of histone H3 Lys 4 in coding regions of active genes
-
Bernstein BE, Humphrey EL, Erlich RL, Schneider R, Bouman P, Liu JS, Kouzarides T, Schreiber SL. 2002. Methylation of histone H3 Lys 4 in coding regions of active genes. Proc Natl Acad Sci USA 99:8695-8700.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 8695-8700
-
-
Bernstein, B.E.1
Humphrey, E.L.2
Erlich, R.L.3
Schneider, R.4
Bouman, P.5
Liu, J.S.6
Kouzarides, T.7
Schreiber, S.L.8
-
7
-
-
19944430797
-
Genomic maps and comparative analysis of histone modifications in human and mouse
-
Bernstein BE, Kamal M, Lindblad-Toh K, Bekiranov S, Bailey DK, Huebert DJ, McMahon S, Karlsson EK, Kulbokas EJ III, Gingeras TR, Schreiber SL, Lander ES. 2005. Genomic maps and comparative analysis of histone modifications in human and mouse. Cell 120:169-181.
-
(2005)
Cell
, vol.120
, pp. 169-181
-
-
Bernstein, B.E.1
Kamal, M.2
Lindblad-Toh, K.3
Bekiranov, S.4
Bailey, D.K.5
Huebert, D.J.6
McMahon, S.7
Karlsson, E.K.8
Kulbokas III, E.J.9
Gingeras, T.R.10
Schreiber, S.L.11
Lander, E.S.12
-
8
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein BE, Mikkelsen TS, Xie X, Kamal M, Huebert DJ, Cuff J, Fry B, Meissner A, Wernig M, Plath K, Jaenisch R, Wagschal A, Feil R, Schreiber SL, Lander ES. 2006. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125:315-326.
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
Mikkelsen, T.S.2
Xie, X.3
Kamal, M.4
Huebert, D.J.5
Cuff, J.6
Fry, B.7
Meissner, A.8
Wernig, M.9
Plath, K.10
Jaenisch, R.11
Wagschal, A.12
Feil, R.13
Schreiber, S.L.14
Lander, E.S.15
-
9
-
-
34249337761
-
Perceptions of epigenetics
-
Bird A. 2007. Perceptions of epigenetics. Nature 447:396-398.
-
(2007)
Nature
, vol.447
, pp. 396-398
-
-
Bird, A.1
-
10
-
-
33646882068
-
Polycomb complexes repress developmental regulators in murine embryonic stem cells
-
Boyer LA, Plath K, Zeitlinger J, Brambrink T, Medeiros LA, Lee TI, Levine SS, Wernig M, Tajonar A, Ray MK, Bell GW, Otte AP, Vidal M, Gifford DK, Young RA, Jaenisch R. 2006. Polycomb complexes repress developmental regulators in murine embryonic stem cells. Nature 441:349-353.
-
(2006)
Nature
, vol.441
, pp. 349-353
-
-
Boyer, L.A.1
Plath, K.2
Zeitlinger, J.3
Brambrink, T.4
Medeiros, L.A.5
Lee, T.I.6
Levine, S.S.7
Wernig, M.8
Tajonar, A.9
Ray, M.K.10
Bell, G.W.11
Otte, A.P.12
Vidal, M.13
Gifford, D.K.14
Young, R.A.15
Jaenisch, R.16
-
11
-
-
1242316281
-
ChIP-chip: Considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments
-
Buck MJ, Lieb JD. 2004. ChIP-chip: Considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments. Genomics 83:349-360.
-
(2004)
Genomics
, vol.83
, pp. 349-360
-
-
Buck, M.J.1
Lieb, J.D.2
-
12
-
-
0023395729
-
Rapid and reversible changes in nucleosome structure accompany the activation, repression, and superinduction of murine fibroblast protooncogenes c-fos and c-myc
-
Chen TA, Allfrey VG. 1987. Rapid and reversible changes in nucleosome structure accompany the activation, repression, and superinduction of murine fibroblast protooncogenes c-fos and c-myc. Proc Natl Acad Sci USA 84:5252-5256.
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, pp. 5252-5256
-
-
Chen, T.A.1
Allfrey, V.G.2
-
13
-
-
0348150714
-
Maintenance of stable heterochromatin domains by dynamic HP1 binding
-
Cheutin T, McNairn AJ, Jenuwein T, Gilbert DM, Singh PB, Misteli T. 2003. Maintenance of stable heterochromatin domains by dynamic HP1 binding. Science 299:721-725.
-
(2003)
Science
, vol.299
, pp. 721-725
-
-
Cheutin, T.1
McNairn, A.J.2
Jenuwein, T.3
Gilbert, D.M.4
Singh, P.B.5
Misteli, T.6
-
14
-
-
0031841947
-
A human RNA polymerase II complex containing factors that modify chromatin structure
-
Cho H, Orphanides G, Sun X, Yang XJ, Ogryzko V, Lees E, Nakatani Y, Reinberg D. 1998. A human RNA polymerase II complex containing factors that modify chromatin structure. Mol Cell Biol 18:5355-5363.
-
(1998)
Mol Cell Biol
, vol.18
, pp. 5355-5363
-
-
Cho, H.1
Orphanides, G.2
Sun, X.3
Yang, X.J.4
Ogryzko, V.5
Lees, E.6
Nakatani, Y.7
Reinberg, D.8
-
15
-
-
33746457753
-
Enhanced histone acetylation and transcription: A dynamic perspective
-
Clayton AL, Hazzalin CA, Mahadevan LC. 2006. Enhanced histone acetylation and transcription: A dynamic perspective. Mol Cell 23:289-296.
-
(2006)
Mol Cell
, vol.23
, pp. 289-296
-
-
Clayton, A.L.1
Hazzalin, C.A.2
Mahadevan, L.C.3
-
16
-
-
57849109058
-
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
-
Core LJ, Waterfall JJ, Lis JT. 2008. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322:1845-1848.
-
(2008)
Science
, vol.322
, pp. 1845-1848
-
-
Core, L.J.1
Waterfall, J.J.2
Lis, J.T.3
-
17
-
-
58049191558
-
Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation
-
Cui K, Zang C, Roh TY, Schones DE, Childs RW, Peng W, Zhao K. 2009. Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation. Cell Stem Cell 4:80-93.
-
(2009)
Cell Stem Cell
, vol.4
, pp. 80-93
-
-
Cui, K.1
Zang, C.2
Roh, T.Y.3
Schones, D.E.4
Childs, R.W.5
Peng, W.6
Zhao, K.7
-
18
-
-
33846972618
-
Differential histone modifications mark mouse imprinting control regions during spermatogenesis
-
Delaval K, Govin J, Cerqueira F, Rousseaux S, Khochbin S, Feil R. 2007. Differential histone modifications mark mouse imprinting control regions during spermatogenesis. EMBO J 26:720-729.
-
(2007)
EMBO J
, vol.26
, pp. 720-729
-
-
Delaval, K.1
Govin, J.2
Cerqueira, F.3
Rousseaux, S.4
Khochbin, S.5
Feil, R.6
-
19
-
-
53549094681
-
Cathepsin L proteolytically processes histone H3 during mouse embryonic stem cell differentiation
-
Duncan EM, Muratore-Schroeder TL, Cook RG, Garcia BA, Shabanowitz J, Hunt DF, Allis CD. 2008. Cathepsin L proteolytically processes histone H3 during mouse embryonic stem cell differentiation. Cell 135:284-294.
-
(2008)
Cell
, vol.135
, pp. 284-294
-
-
Duncan, E.M.1
Muratore-Schroeder, T.L.2
Cook, R.G.3
Garcia, B.A.4
Shabanowitz, J.5
Hunt, D.F.6
Allis, C.D.7
-
20
-
-
21044450362
-
MAP kinase-mediated phosphorylation of distinct pools of histone H3 at S10 or S28 via mitogen- and stress-activated kinase 1/2
-
Dyson MH, Thomson S, Inagaki M, Goto H, Arthur SJ, Nightingale K, Iborra FJ, Mahadevan LC. 2005. MAP kinase-mediated phosphorylation of distinct pools of histone H3 at S10 or S28 via mitogen- and stress-activated kinase 1/2. J Cell Sci 118:2247-2259.
-
(2005)
J Cell Sci
, vol.118
, pp. 2247-2259
-
-
Dyson, M.H.1
Thomson, S.2
Inagaki, M.3
Goto, H.4
Arthur, S.J.5
Nightingale, K.6
Iborra, F.J.7
Mahadevan, L.C.8
-
21
-
-
0037119438
-
Site-specific loss of acetylation upon phosphorylation of histone H3
-
Edmondson DG, Davie JK, Zhou J, Mirnikjoo B, Tatchell K, Dent SY. 2002. Site-specific loss of acetylation upon phosphorylation of histone H3. J Biol Chem 277:29496-29502.
-
(2002)
J Biol Chem
, vol.277
, pp. 29496-29502
-
-
Edmondson, D.G.1
Davie, J.K.2
Zhou, J.3
Mirnikjoo, B.4
Tatchell, K.5
Dent, S.Y.6
-
22
-
-
38549139593
-
Dynamic histone H3 methylation during gene induction: HYPB/Setd2 mediates all H3K36 trimethylation
-
Edmunds JW, Mahadevan LC, Clayton AL. 2008. Dynamic histone H3 methylation during gene induction: HYPB/Setd2 mediates all H3K36 trimethylation. EMBO J 27:406-420.
-
(2008)
EMBO J
, vol.27
, pp. 406-420
-
-
Edmunds, J.W.1
Mahadevan, L.C.2
Clayton, A.L.3
-
23
-
-
33747453473
-
Insulators: Exploiting transcriptional and epigenetic mechanisms
-
Gaszner M, Felsenfeld G. 2006. Insulators: Exploiting transcriptional and epigenetic mechanisms. Nat Rev Genet 7:703-713.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 703-713
-
-
Gaszner, M.1
Felsenfeld, G.2
-
24
-
-
54949110207
-
Heterogeneity of embryonic and adult stem cells
-
Graf T, Stadtfeld M. 2008. Heterogeneity of embryonic and adult stem cells. Cell Stem Cell 3:480-483.
-
(2008)
Cell Stem Cell
, vol.3
, pp. 480-483
-
-
Graf, T.1
Stadtfeld, M.2
-
25
-
-
35349030188
-
Methylation of histone H3R2 by PRMT6 and H3K4 by an MLL complex are mutually exclusive
-
Guccione E, Bassi C, Casadio F, Martinato F, Cesaroni M, Schuchlautz H, Luscher B, Amati B. 2007. Methylation of histone H3R2 by PRMT6 and H3K4 by an MLL complex are mutually exclusive. Nature 449:933-937.
-
(2007)
Nature
, vol.449
, pp. 933-937
-
-
Guccione, E.1
Bassi, C.2
Casadio, F.3
Martinato, F.4
Cesaroni, M.5
Schuchlautz, H.6
Luscher, B.7
Amati, B.8
-
26
-
-
34447098370
-
A chromatin landmark and transcription initiation at most promoters in human cells
-
Guenther MG, Levine SS, Boyer LA, Jaenisch R, Young RA. 2007. A chromatin landmark and transcription initiation at most promoters in human cells. Cell 130:77-88.
-
(2007)
Cell
, vol.130
, pp. 77-88
-
-
Guenther, M.G.1
Levine, S.S.2
Boyer, L.A.3
Jaenisch, R.4
Young, R.A.5
-
27
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large noncoding RNAs in mammals
-
Guttman M, Amit I, Garber M, French C, Lin MF, Feldser D, Huarte M, Zuk O, Carey BW, Cassady JP, Cabili MN, Jaenisch R, Mikkelsen TS, Jacks T, Hacohen N, Bernstein BE, Kellis M, Regev A, Rinn JL, Lander ES. 2009. Chromatin signature reveals over a thousand highly conserved large noncoding RNAs in mammals. Nature 458:223-227.
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
French, C.4
Lin, M.F.5
Feldser, D.6
Huarte, M.7
Zuk, O.8
Carey, B.W.9
Cassady, J.P.10
Cabili, M.N.11
Jaenisch, R.12
Mikkelsen, T.S.13
Jacks, T.14
Hacohen, N.15
Bernstein, B.E.16
Kellis, M.17
Regev, A.18
Rinn, J.L.19
Lander, E.S.20
more..
-
28
-
-
0036358038
-
MAPK-regulated transcription: A continuously variable gene switch?
-
Hazzalin CA, Mahadevan LC. 2002. MAPK-regulated transcription: A continuously variable gene switch? Nat Rev Mol Cell Biol 3:30-40.
-
(2002)
Nat Rev Mol Cell Biol
, vol.3
, pp. 30-40
-
-
Hazzalin, C.A.1
Mahadevan, L.C.2
-
29
-
-
29144463657
-
Dynamic acetylation of all lysine 4-methylated histone H3 in the mouse nucleus: Analysis at c-fos and c-jun
-
Hazzalin CA, Mahadevan LC. 2005. Dynamic acetylation of all lysine 4-methylated histone H3 in the mouse nucleus: Analysis at c-fos and c-jun. PLoS Biol 3:e393.
-
(2005)
PLoS Biol
, vol.3
-
-
Hazzalin, C.A.1
Mahadevan, L.C.2
-
30
-
-
0024003456
-
A direct link between core histone acetylation and transcriptionally active chromatin
-
Hebbes TR, Thorne AW, Crane-Robinson C. 1988. A direct link between core histone acetylation and transcriptionally active chromatin. EMBO J 7:1395-1402.
-
(1988)
EMBO J
, vol.7
, pp. 1395-1402
-
-
Hebbes, T.R.1
Thorne, A.W.2
Crane-Robinson, C.3
-
31
-
-
33847334699
-
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
-
Heintzman ND, Stuart RK, Hon G, Fu Y, Ching CW, Hawkins RD, Barrera LO, Van Calcar S, Qu C, Ching KA, Wang W, Weng Z, Green RD, Crawford GE, Ren B. 2007. Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat Genet 39:311-318.
-
(2007)
Nat Genet
, vol.39
, pp. 311-318
-
-
Heintzman, N.D.1
Stuart, R.K.2
Hon, G.3
Fu, Y.4
Ching, C.W.5
Hawkins, R.D.6
Barrera, L.O.7
Van Calcar, S.8
Qu, C.9
Ching, K.A.10
Wang, W.11
Weng, Z.12
Green, R.D.13
Crawford, G.E.14
Ren, B.15
-
32
-
-
65549104157
-
Histone modifications at human enhancers reflect global cell-type-specific gene expression
-
Heintzman ND, Hon GC, Hawkins RD, Kheradpour P, Stark A, Harp LF, Ye Z, Lee LK, Stuart RK, Ching CW, Ching KA, Antosiewicz-Bourget JE, Liu H, Zhang X, Green RD, Lobanenkov VV, Stewart R, Thomson JA, Crawford GE, Kellis M, Ren B. 2009. Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature 459:108-112.
-
(2009)
Nature
, vol.459
, pp. 108-112
-
-
Heintzman, N.D.1
Hon, G.C.2
Hawkins, R.D.3
Kheradpour, P.4
Stark, A.5
Harp, L.F.6
Ye, Z.7
Lee, L.K.8
Stuart, R.K.9
Ching, C.W.10
Ching, K.A.11
Antosiewicz-Bourget, J.E.12
Liu, H.13
Zhang, X.14
Green, R.D.15
Lobanenkov, V.V.16
Stewart, R.17
Thomson, J.A.18
Crawford, G.E.19
Kellis, M.20
Ren, B.21
more..
-
33
-
-
41249088464
-
Arginine methylation of the histone H3 tail impedes effector binding
-
Iberg AN, Espejo A, Cheng D, Kim D, Michaud-Levesque J, Richard S, Bedford MT. 2008. Arginine methylation of the histone H3 tail impedes effector binding. J Biol Chem 283:3006-3010.
-
(2008)
J Biol Chem
, vol.283
, pp. 3006-3010
-
-
Iberg, A.N.1
Espejo, A.2
Cheng, D.3
Kim, D.4
Michaud-Levesque, J.5
Richard, S.6
Bedford, M.T.7
-
34
-
-
33846905189
-
Distinctive signatures of histone methylation in transcribed coding and noncoding human beta-globin sequences
-
Kim A, Kiefer CM, Dean A. 2007. Distinctive signatures of histone methylation in transcribed coding and noncoding human beta-globin sequences. Mol Cell Biol 27:1271-1279.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 1271-1279
-
-
Kim, A.1
Kiefer, C.M.2
Dean, A.3
-
35
-
-
32344450824
-
Genomic DNA methylation: The mark and its mediators
-
Klose RJ, Bird AP. 2006. Genomic DNA methylation: The mark and its mediators. Trends Biochem Sci 31:89-97.
-
(2006)
Trends Biochem Sci
, vol.31
, pp. 89-97
-
-
Klose, R.J.1
Bird, A.P.2
-
36
-
-
34250307630
-
The landscape of histone modifications across 1% of the human genome in five human cell lines
-
Koch CM, Andrews RM, Flicek P, Dillon SC, Karaoz U, Clelland GK, Wilcox S, Beare DM, Fowler JC, Couttet P, James KD, Lefebvre GC, Bruce AW, Dovey OM, Ellis PD, Dhami P, Langford CF, Weng Z, Birney E, Carter NP, Vetrie D, Dunham I. 2007. The landscape of histone modifications across 1% of the human genome in five human cell lines. Genome Res 17:691-707.
-
(2007)
Genome Res
, vol.17
, pp. 691-707
-
-
Koch, C.M.1
Andrews, R.M.2
Flicek, P.3
Dillon, S.C.4
Karaoz, U.5
Clelland, G.K.6
Wilcox, S.7
Beare, D.M.8
Fowler, J.C.9
Couttet, P.10
James, K.D.11
Lefebvre, G.C.12
Bruce, A.W.13
Dovey, O.M.14
Ellis, P.D.15
Dhami, P.16
Langford, C.F.17
Weng, Z.18
Birney, E.19
Carter, N.P.20
Vetrie, D.21
Dunham, I.22
more..
-
37
-
-
61349098460
-
Differential chromatin marking of introns and expressed exons by H3K36me3
-
Kolasinska-Zwierz P, Down T, Latorre I, Liu T, Liu XS, Ahringer J. 2009. Differential chromatin marking of introns and expressed exons by H3K36me3. Nat Genet 41:376-381.
-
(2009)
Nat Genet
, vol.41
, pp. 376-381
-
-
Kolasinska-Zwierz, P.1
Down, T.2
Latorre, I.3
Liu, T.4
Liu, X.S.5
Ahringer, J.6
-
38
-
-
33847076849
-
Chromatin modifications and their function
-
Kouzarides T. 2007. Chromatin modifications and their function. Cell 128:693-705.
-
(2007)
Cell
, vol.128
, pp. 693-705
-
-
Kouzarides, T.1
-
39
-
-
55449105221
-
-
Ku M, Koche RP, Rheinbay E, Mendenhall EM, Endoh M, Mikkelsen TS, Presser A, Nusbaum C, Xie X, Chi AS, Adli M, Kasif S, Ptaszek LM, Cowan CA, Lander ES, Koseki H, Bernstein BE. 2008. Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains. PLoS Genet 4:e1000242.
-
Ku M, Koche RP, Rheinbay E, Mendenhall EM, Endoh M, Mikkelsen TS, Presser A, Nusbaum C, Xie X, Chi AS, Adli M, Kasif S, Ptaszek LM, Cowan CA, Lander ES, Koseki H, Bernstein BE. 2008. Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains. PLoS Genet 4:e1000242.
-
-
-
-
40
-
-
0035282573
-
Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins
-
Lachner M, O'Carroll D, Rea S, Mechtler K, Jenuwein T. 2001. Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins. Nature 410:116-120.
-
(2001)
Nature
, vol.410
, pp. 116-120
-
-
Lachner, M.1
O'Carroll, D.2
Rea, S.3
Mechtler, K.4
Jenuwein, T.5
-
41
-
-
2042437650
-
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, Kann L, Lehoczky J, LeVine R, McEwan P, McKernan K, Meldrim J, Mesirov JP, Miranda C, Morris W, Naylor J, Raymond C, Rosetti M, Santos R, Sheridan A, Sougnez C, Stange-Thomann N, Stojanovic N, Subramanian A, Wyman D, Rogers J, Sulston J, Ainscough R, Beck S, Bentley D, Burton J, Clee C, Carter N, Coulson A, Deadman R, Deloukas P, Dunham A, Dunham I, Durbin R, French L, Grafham D, Gregory S, Hubbard T, Humphray S, Hunt A, Jones M, Lloyd C, McMurray A, Matthews L, Mercer S, Milne S, Mullikin JC, Mungall A, Plumb R, Ross M, Shownkeen R, Sims S, Waterston RH, Wilson RK, Hillier LW, McPherson JD, Marra MA, Mardis ER, Fulton LA, Chinwalla AT, Pepin KH, Gish WR, Chissoe SL, Wendl MC, Delehaunty KD, Miner TL, Delehaunty A, Kramer JB, Cook LL, Fulton RS, Johnson DL, Minx PJ, Clifton SW, Hawkins T, Branscomb E, Predki P, Richardson P, Wenning S, S
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, Kann L, Lehoczky J, LeVine R, McEwan P, McKernan K, Meldrim J, Mesirov JP, Miranda C, Morris W, Naylor J, Raymond C, Rosetti M, Santos R, Sheridan A, Sougnez C, Stange-Thomann N, Stojanovic N, Subramanian A, Wyman D, Rogers J, Sulston J, Ainscough R, Beck S, Bentley D, Burton J, Clee C, Carter N, Coulson A, Deadman R, Deloukas P, Dunham A, Dunham I, Durbin R, French L, Grafham D, Gregory S, Hubbard T, Humphray S, Hunt A, Jones M, Lloyd C, McMurray A, Matthews L, Mercer S, Milne S, Mullikin JC, Mungall A, Plumb R, Ross M, Shownkeen R, Sims S, Waterston RH, Wilson RK, Hillier LW, McPherson JD, Marra MA, Mardis ER, Fulton LA, Chinwalla AT, Pepin KH, Gish WR, Chissoe SL, Wendl MC, Delehaunty KD, Miner TL, Delehaunty A, Kramer JB, Cook LL, Fulton RS, Johnson DL, Minx PJ, Clifton SW, Hawkins T, Branscomb E, Predki P, Richardson P, Wenning S, Slezak T, Doggett N, Cheng JF, Olsen A, Lucas S, Elkin C, Uberbacher E, Frazier M, et al. 2001. Initial sequencing and analysis of the human genome. Nature 409:860-921.
-
-
-
-
42
-
-
48949092575
-
A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3′ end RNA polyadenylation
-
Lian Z, Karpikov A, Lian J, Mahajan MC, Hartman S, Gerstein M, Snyder M, Weissman SM. 2008. A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3′ end RNA polyadenylation. Genome Res 18:1224-1237.
-
(2008)
Genome Res
, vol.18
, pp. 1224-1237
-
-
Lian, Z.1
Karpikov, A.2
Lian, J.3
Mahajan, M.C.4
Hartman, S.5
Gerstein, M.6
Snyder, M.7
Weissman, S.M.8
-
43
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8 Å resolution
-
Luger K, Mader AW, Richmond RK, Sargent DF, Richmond TJ. 1997. Crystal structure of the nucleosome core particle at 2.8 Å resolution. Nature 389:251-260.
-
(1997)
Nature
, vol.389
, pp. 251-260
-
-
Luger, K.1
Mader, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
44
-
-
15444372817
-
The profile of repeat-associated histone lysine methylation states in the mouse epigenome
-
Martens JH, O'Sullivan RJ, Braunschweig U, Opravil S, Radolf M, Steinlein P, Jenuwein T. 2005. The profile of repeat-associated histone lysine methylation states in the mouse epigenome. EMBO J 24:800-812.
-
(2005)
EMBO J
, vol.24
, pp. 800-812
-
-
Martens, J.H.1
O'Sullivan, R.J.2
Braunschweig, U.3
Opravil, S.4
Radolf, M.5
Steinlein, P.6
Jenuwein, T.7
-
45
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, Giannoukos G, Alvarez P, Brockman W, Kim TK, Koche RP, Lee W, Mendenhall E, O'Donovan A, Presser A, Russ C, Xie X, Meissner A, Wernig M, Jaenisch R, Nusbaum C, Lander ES, Bernstein BE. 2007. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448:553-560.
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
Ku, M.2
Jaffe, D.B.3
Issac, B.4
Lieberman, E.5
Giannoukos, G.6
Alvarez, P.7
Brockman, W.8
Kim, T.K.9
Koche, R.P.10
Lee, W.11
Mendenhall, E.12
O'Donovan, A.13
Presser, A.14
Russ, C.15
Xie, X.16
Meissner, A.17
Wernig, M.18
Jaenisch, R.19
Nusbaum, C.20
Lander, E.S.21
Bernstein, B.E.22
more..
-
46
-
-
43049085949
-
Differential H3K4 methylation identifies developmentally poised hematopoietic genes
-
Orford K, Kharchenko P, Lai W, Dao MC, Worhunsky DJ, Ferro A, Janzen V, Park PJ, Scadden DT. 2008. Differential H3K4 methylation identifies developmentally poised hematopoietic genes. Dev Cell 14:798-809.
-
(2008)
Dev Cell
, vol.14
, pp. 798-809
-
-
Orford, K.1
Kharchenko, P.2
Lai, W.3
Dao, M.C.4
Worhunsky, D.J.5
Ferro, A.6
Janzen, V.7
Park, P.J.8
Scadden, D.T.9
-
47
-
-
34548434716
-
Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells
-
Pan G, Tian S, Nie J, Yang C, Ruotti V, Wei H, Jonsdottir GA, Stewart R, Thomson JA. 2007. Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells. Cell Stem Cell 1:299-312.
-
(2007)
Cell Stem Cell
, vol.1
, pp. 299-312
-
-
Pan, G.1
Tian, S.2
Nie, J.3
Yang, C.4
Ruotti, V.5
Wei, H.6
Jonsdottir, G.A.7
Stewart, R.8
Thomson, J.A.9
-
48
-
-
23944462969
-
Genome-wide map of nucleosome acetylation and methylation in yeast
-
Pokholok DK, Harbison CT, Levine S, Cole M, Hannett NM, Lee TI, Bell GW, Walker K, Rolfe PA, Herbolsheimer E, Zeitlinger J, Lewitter F, Gifford DK, Young RA. 2005. Genome-wide map of nucleosome acetylation and methylation in yeast. Cell 122:517-527.
-
(2005)
Cell
, vol.122
, pp. 517-527
-
-
Pokholok, D.K.1
Harbison, C.T.2
Levine, S.3
Cole, M.4
Hannett, N.M.5
Lee, T.I.6
Bell, G.W.7
Walker, K.8
Rolfe, P.A.9
Herbolsheimer, E.10
Zeitlinger, J.11
Lewitter, F.12
Gifford, D.K.13
Young, R.A.14
-
49
-
-
14644406272
-
Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping
-
Roh TY, Cuddapah S, Zhao K. 2005. Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping. Genes Dev 19:542-552.
-
(2005)
Genes Dev
, vol.19
, pp. 542-552
-
-
Roh, T.Y.1
Cuddapah, S.2
Zhao, K.3
-
50
-
-
33750488431
-
The genomic landscape of histone modifications in human T cells
-
Roh TY, Cuddapah S, Cui K, Zhao K. 2006. The genomic landscape of histone modifications in human T cells. Proc Natl Acad Sci USA 103:15782-15787.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 15782-15787
-
-
Roh, T.Y.1
Cuddapah, S.2
Cui, K.3
Zhao, K.4
-
51
-
-
64849110610
-
Determination of enriched histone modifications in non-genic portions of the human genome
-
Rosenfeld JA, Wang Z, Schones DE, Zhao K, Desalle R, Zhang MQ. 2009. Determination of enriched histone modifications in non-genic portions of the human genome. BMC Genomics 10:143.
-
(2009)
BMC Genomics
, vol.10
, pp. 143
-
-
Rosenfeld, J.A.1
Wang, Z.2
Schones, D.E.3
Zhao, K.4
Desalle, R.5
Zhang, M.Q.6
-
53
-
-
0037074010
-
Signaling network model of chromatin
-
Schreiber SL, Bernstein BE. 2002. Signaling network model of chromatin. Cell 111:771-778.
-
(2002)
Cell
, vol.111
, pp. 771-778
-
-
Schreiber, S.L.1
Bernstein, B.E.2
-
54
-
-
57849140661
-
Divergent transcription from active promoters
-
Seila AC, Calabrese JM, Levine SS, Yeo GW, Rahl PB, Flynn RA, Young RA, Sharp PA. 2008. Divergent transcription from active promoters. Science 322:1849-1851.
-
(2008)
Science
, vol.322
, pp. 1849-1851
-
-
Seila, A.C.1
Calabrese, J.M.2
Levine, S.S.3
Yeo, G.W.4
Rahl, P.B.5
Flynn, R.A.6
Young, R.A.7
Sharp, P.A.8
-
55
-
-
36249027156
-
Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing
-
Sims RJ III, Millhouse S, Chen CF, Lewis BA, Erdjument-Bromage H, Tempst P, Manley JL, Reinberg D. 2007. Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing. Mol Cell 28:665-676.
-
(2007)
Mol Cell
, vol.28
, pp. 665-676
-
-
Sims III, R.J.1
Millhouse, S.2
Chen, C.F.3
Lewis, B.A.4
Erdjument-Bromage, H.5
Tempst, P.6
Manley, J.L.7
Reinberg, D.8
-
56
-
-
42149146774
-
DOT1L/KMT4 recruitment and H3K79 methylation are ubiquitously coupled with gene transcription in mammalian cells
-
Steger DJ, Lefterova MI, Ying L, Stonestrom AJ, Schupp M, Zhuo D, Vakoc AL, Kim JE, Chen J, Lazar MA, Blobel GA, Vakoc CR. 2008. DOT1L/KMT4 recruitment and H3K79 methylation are ubiquitously coupled with gene transcription in mammalian cells. Mol Cell Biol 28:2825-2839.
-
(2008)
Mol Cell Biol
, vol.28
, pp. 2825-2839
-
-
Steger, D.J.1
Lefterova, M.I.2
Ying, L.3
Stonestrom, A.J.4
Schupp, M.5
Zhuo, D.6
Vakoc, A.L.7
Kim, J.E.8
Chen, J.9
Lazar, M.A.10
Blobel, G.A.11
Vakoc, C.R.12
-
57
-
-
0034610814
-
The language of covalent histone modifications
-
Strahl BD, Allis CD. 2000. The language of covalent histone modifications. Nature 403:41-45.
-
(2000)
Nature
, vol.403
, pp. 41-45
-
-
Strahl, B.D.1
Allis, C.D.2
-
58
-
-
7544227521
-
Centromeric chromatin exhibits a histone modification pattern that is distinct from both euchromatin and heterochromatin
-
Sullivan BA, Karpen GH. 2004. Centromeric chromatin exhibits a histone modification pattern that is distinct from both euchromatin and heterochromatin. Nat Struct Mol Biol 11:1076-1083.
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 1076-1083
-
-
Sullivan, B.A.1
Karpen, G.H.2
-
59
-
-
35848961668
-
How chromatin-binding modules interpret histone modifications: Lessons from professional pocket pickers
-
Taverna SD, Li H, Ruthenburg AJ, Allis CD, Patel DJ. 2007. How chromatin-binding modules interpret histone modifications: Lessons from professional pocket pickers. Nat Struct Mol Biol 14:1025-1040.
-
(2007)
Nat Struct Mol Biol
, vol.14
, pp. 1025-1040
-
-
Taverna, S.D.1
Li, H.2
Ruthenburg, A.J.3
Allis, C.D.4
Patel, D.J.5
-
60
-
-
0033200205
-
The nucleosomal response associated with immediate-early gene induction is mediated via alternative MAP kinase cascades: MSK1 as a potential histone H3/HMG-14 kinase
-
Thomson S, Clayton AL, Hazzalin CA, Rose S, Barratt MJ, Mahadevan LC. 1999. The nucleosomal response associated with immediate-early gene induction is mediated via alternative MAP kinase cascades: MSK1 as a potential histone H3/HMG-14 kinase. EMBO J 18:4779-4793.
-
(1999)
EMBO J
, vol.18
, pp. 4779-4793
-
-
Thomson, S.1
Clayton, A.L.2
Hazzalin, C.A.3
Rose, S.4
Barratt, M.J.5
Mahadevan, L.C.6
-
61
-
-
0035694785
-
Independent dynamic regulation of histone phosphorylation and acetylation during immediate-early gene induction
-
Thomson S, Clayton AL, Mahadevan LC. 2001. Independent dynamic regulation of histone phosphorylation and acetylation during immediate-early gene induction. Mol Cell 8:1231-1241.
-
(2001)
Mol Cell
, vol.8
, pp. 1231-1241
-
-
Thomson, S.1
Clayton, A.L.2
Mahadevan, L.C.3
-
62
-
-
15044358494
-
Reading signals on the nucleosome with a new nomenclature for modified histones
-
Turner BM. 2005. Reading signals on the nucleosome with a new nomenclature for modified histones. Nat Struct Mol Biol 12:110-112.
-
(2005)
Nat Struct Mol Biol
, vol.12
, pp. 110-112
-
-
Turner, B.M.1
-
63
-
-
23044431656
-
Histone H3 lysine 9 methylation and HP1gamma are associated with transcription elongation through mammalian chromatin
-
Vakoc CR, Mandat SA, Olenchock BA, Blobel GA. 2005. Histone H3 lysine 9 methylation and HP1gamma are associated with transcription elongation through mammalian chromatin. Mol Cell 19:381-391.
-
(2005)
Mol Cell
, vol.19
, pp. 381-391
-
-
Vakoc, C.R.1
Mandat, S.A.2
Olenchock, B.A.3
Blobel, G.A.4
-
64
-
-
33845451555
-
Profile of histone lysine methylation across transcribed mammalian chromatin
-
Vakoc CR, Sachdeva MM, Wang H, Blobel GA. 2006. Profile of histone lysine methylation across transcribed mammalian chromatin. Mol Cell Biol 26:9185-9195.
-
(2006)
Mol Cell Biol
, vol.26
, pp. 9185-9195
-
-
Vakoc, C.R.1
Sachdeva, M.M.2
Wang, H.3
Blobel, G.A.4
-
65
-
-
46249112085
-
Combinatorial patterns of histone acetylations and methylations in the human genome
-
Wang Z, Zang C, Rosenfeld JA, Schones DE, Barski A, Cuddapah S, Cui K, Roh TY, Peng W, Zhang MQ, Zhao K. 2008. Combinatorial patterns of histone acetylations and methylations in the human genome. Nat Genet 40:897-903.
-
(2008)
Nat Genet
, vol.40
, pp. 897-903
-
-
Wang, Z.1
Zang, C.2
Rosenfeld, J.A.3
Schones, D.E.4
Barski, A.5
Cuddapah, S.6
Cui, K.7
Roh, T.Y.8
Peng, W.9
Zhang, M.Q.10
Zhao, K.11
-
66
-
-
58149214356
-
Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4+ T cells
-
Wei G, Wei L, Zhu J, Zang C, Hu-Li J, Yao Z, Cui K, Kanno Y, Roh TY, Watford WT, Schones DE, Peng W, Sun HW, Paul WE, O'Shea JJ, Zhao K. 2009. Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4+ T cells. Immunity 30:155-167.
-
(2009)
Immunity
, vol.30
, pp. 155-167
-
-
Wei, G.1
Wei, L.2
Zhu, J.3
Zang, C.4
Hu-Li, J.5
Yao, Z.6
Cui, K.7
Kanno, Y.8
Roh, T.Y.9
Watford, W.T.10
Schones, D.E.11
Peng, W.12
Sun, H.W.13
Paul, W.E.14
O'Shea, J.J.15
Zhao, K.16
-
67
-
-
59149083658
-
Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells
-
Wen B, Wu H, Shinkai Y, Irizarry RA, Feinberg AP. 2009. Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells. Nat Genet 41:246-250.
-
(2009)
Nat Genet
, vol.41
, pp. 246-250
-
-
Wen, B.1
Wu, H.2
Shinkai, Y.3
Irizarry, R.A.4
Feinberg, A.P.5
-
68
-
-
60549111235
-
Histone H3 lysine 56 acetylation is linked to the core transcriptional network in human embryonic stem cells
-
Xie W, Song C, Young NL, Sperling AS, Xu F, Sridharan R, Conway AE, Garcia BA, Plath K, Clark AT, Grunstein M. 2009. Histone H3 lysine 56 acetylation is linked to the core transcriptional network in human embryonic stem cells. Mol Cell 33:417-427.
-
(2009)
Mol Cell
, vol.33
, pp. 417-427
-
-
Xie, W.1
Song, C.2
Young, N.L.3
Sperling, A.S.4
Xu, F.5
Sridharan, R.6
Conway, A.E.7
Garcia, B.A.8
Plath, K.9
Clark, A.T.10
Grunstein, M.11
-
69
-
-
58049206591
-
The Iws1:Spt6:CTD complex controls cotranscriptional mRNA biosynthesis and HYPB/Setd2-mediated histone H3K36 methylation
-
Yoh SM, Lucas JS, Jones KA. 2008. The Iws1:Spt6:CTD complex controls cotranscriptional mRNA biosynthesis and HYPB/Setd2-mediated histone H3K36 methylation. Genes Dev 22:3422-3434.
-
(2008)
Genes Dev
, vol.22
, pp. 3422-3434
-
-
Yoh, S.M.1
Lucas, J.S.2
Jones, K.A.3
-
70
-
-
34548424709
-
Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells
-
Zhao XD, Han X, Chew JL, Liu J, Chiu KP, Choo A, Orlov YL, Sung WK, Shahab A, Kuznetsov VA, Bourque G, Oh S, Ruan Y, Ng HH, Wei CL. 2007. Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells. Cell Stem Cell 1:286-298.
-
(2007)
Cell Stem Cell
, vol.1
, pp. 286-298
-
-
Zhao, X.D.1
Han, X.2
Chew, J.L.3
Liu, J.4
Chiu, K.P.5
Choo, A.6
Orlov, Y.L.7
Sung, W.K.8
Shahab, A.9
Kuznetsov, V.A.10
Bourque, G.11
Oh, S.12
Ruan, Y.13
Ng, H.H.14
Wei, C.L.15
-
71
-
-
59649087452
-
The nucleosome family: Dynamic and growing
-
Zlatanova J, Bishop TC, Victor JM, Jackson V, van Holde K. 2009. The nucleosome family: Dynamic and growing. Structure 17:160-171.
-
(2009)
Structure
, vol.17
, pp. 160-171
-
-
Zlatanova, J.1
Bishop, T.C.2
Victor, J.M.3
Jackson, V.4
van Holde, K.5
|