-
3
-
-
0031961672
-
Lactose repressor protein: Functional properties and structure
-
Matthews K S and Nichols J C 1998 Lactose repressor protein: functional properties and structure Prog. Nucl. Acid Res. Mol. Biol. 58 127-64
-
(1998)
Prog. Nucl. Acid Res. Mol. Biol.
, vol.58
, pp. 127-164
-
-
Matthews, K.S.1
Nichols, J.C.2
-
4
-
-
20444411150
-
The lac repressor
-
Lewis M 2005 The lac repressor C. R. Biologies 328 521-48
-
(2005)
C. R. Biologies
, vol.328
, Issue.6
, pp. 521-548
-
-
Lewis, M.1
-
6
-
-
0021188333
-
An operator at -280 base pairs that is required for repression of araBAD operon promoter: Addition of DNA helical turns between the operator and promoter cyclically hinders repression
-
Dunn T M, Hahn S, Ogden S and Schleif R F 1984 An operator at -280 base pairs that is required for repression of araBAD operon promoter: addition of DNA helical turns between the operator and promoter cyclically hinders repression Proc. Natl Acad. Sci. USA 81 5017-20
-
(1984)
Proc. Natl Acad. Sci. USA
, vol.81
, Issue.16
, pp. 5017-5020
-
-
Dunn, T.M.1
Hahn, S.2
Ogden, S.3
Schleif, R.F.4
-
7
-
-
0022529619
-
Upstream operators enhance repression of the lac promoter
-
Mossing M C and Record M T 1986 Upstream operators enhance repression of the lac promoter Science 233 889-92
-
(1986)
Science
, vol.233
, Issue.4766
, pp. 889-892
-
-
Mossing, M.C.1
Record, M.T.2
-
8
-
-
0023333893
-
Lac repressor forms loops with linear DNA carrying 2 suitably spaced lac operators
-
Krämer H, Niemöller M, Amouyal M, Revet B, von Wilcken-Bergmann B and Müller-Hill B 1987 lac repressor forms loops with linear DNA carrying 2 suitably spaced lac operators EMBO J. 6 1481-91
-
(1987)
EMBO J.
, vol.6
, pp. 1481-1491
-
-
Krämer, H.1
Niemöller, M.2
Amouyal, M.3
Revet, B.4
Von Wilcken-Bergmann, B.5
Müller-Hill, B.6
-
9
-
-
0023665179
-
Influence of sequence and distance between two operators on interaction with the lac repressor
-
Hsieh W T, Whitson P A, Matthews K S and Wells R D 1987 Influence of sequence and distance between two operators on interaction with the lac repressor J. Biol. Chem. 262 14583-91
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 14583-14591
-
-
Hsieh, W.T.1
Whitson, P.A.2
Matthews, K.S.3
Wells, R.D.4
-
10
-
-
0024811753
-
Multipartite genetic control elements: Communication by DNA loop
-
Adhya S 1989 Multipartite genetic control elements: communication by DNA loop Ann. Rev. Genet. 23 227-50
-
(1989)
Ann. Rev. Genet.
, vol.23
, Issue.1
, pp. 227-250
-
-
Adhya, S.1
-
11
-
-
0033545416
-
Four dimers of lambda repressor bound to two suitably spaced pairs of lambda operators form octamers and DNA loops over large distances
-
Revet B, von Wilcken-Bergmann B, Bessert H, Barker A and Müller-Hill B 1999 Four dimers of lambda repressor bound to two suitably spaced pairs of lambda operators form octamers and DNA loops over large distances Curr. Biol. 9 151-4
-
(1999)
Curr. Biol.
, vol.9
, Issue.3
, pp. 151-154
-
-
Revet, B.1
Von Wilcken-Bergmann, B.2
Bessert, H.3
Barker, A.4
Müller-Hill, B.5
-
12
-
-
0042622638
-
DNA looping and physical constraints on transcription regulation
-
Vilar J M G and Leibler S 2003 DNA looping and physical constraints on transcription regulation J. Mol. Biol. 331 981-9
-
(2003)
J. Mol. Biol.
, vol.331
, Issue.5
, pp. 981-989
-
-
Vilar, J.M.G.1
Leibler, S.2
-
13
-
-
0029975889
-
Repression of lac promoter as a function of distance, phase and quality of an auxiliary lac operator
-
Muller J, Oehler S and Muller-Hill B 1996 Repression of lac promoter as a function of distance, phase and quality of an auxiliary lac operator J. Mol. Biol. 257 21-9
-
(1996)
J. Mol. Biol.
, vol.257
, Issue.1
, pp. 21-29
-
-
Muller, J.1
Oehler, S.2
Muller-Hill, B.3
-
14
-
-
0028956979
-
Measurement of lactose repressor-mediated loop formation and breakdown in single DNA-molecules
-
Finzi L and Gelles J 1995 Measurement of lactose repressor-mediated loop formation and breakdown in single DNA-molecules Science 267 378-80
-
(1995)
Science
, vol.267
, Issue.5196
, pp. 378-380
-
-
Finzi, L.1
Gelles, J.2
-
15
-
-
33748780364
-
Tethered particle motion as a diagnostic of DNA tether length
-
Nelson P C, Zurla C, Brogioli D, Beausang J F, Finzi L and Dunlap D 2006 Tethered particle motion as a diagnostic of DNA tether length J. Phys. Chem. B 110 17260-7
-
(2006)
J. Phys. Chem.
, vol.110
, Issue.34
, pp. 17260-17267
-
-
Nelson, P.C.1
Zurla, C.2
Brogioli, D.3
Beausang, J.F.4
Finzi, L.5
Dunlap, D.6
-
16
-
-
33746207766
-
Lac repressor hinge flexibility and DNA looping: Single molecule kinetics by tethered particle motion
-
Vanzi F, Broggio C, Sacconi L and Pavone F S 2006 Lac repressor hinge flexibility and DNA looping: single molecule kinetics by tethered particle motion Nucl. Acids Res. 34 3409-20
-
(2006)
Nucl. Acids Res.
, vol.34
, Issue.12
, pp. 3409-3420
-
-
Vanzi, F.1
Broggio, C.2
Sacconi, L.3
Pavone, F.S.4
-
17
-
-
34147143884
-
DNA looping kinetics analyzed using diffusive hidden Markov model
-
Beausang J F, Zurla C, Manzo C, Dunlap D, Finzi L and Nelson P C 2007 DNA looping kinetics analyzed using diffusive hidden Markov model Biophys. J. 92 L64-6
-
(2007)
Biophys. J.
, vol.92
, Issue.8
-
-
Beausang, J.F.1
Zurla, C.2
Manzo, C.3
Dunlap, D.4
Finzi, L.5
Nelson, P.C.6
-
18
-
-
35248840949
-
Diffusive hidden Markov model characterization of DNA looping dynamics in tethered particle experiments
-
Beausang J F and Nelson P C 2007 Diffusive hidden Markov model characterization of DNA looping dynamics in tethered particle experiments Phys. Biol. 4 205-19
-
(2007)
Phys. Biol.
, vol.4
, Issue.3
, pp. 205-219
-
-
Beausang, J.F.1
Nelson, P.C.2
-
19
-
-
0020612485
-
Dependence of DNA helix flexibility on base composition
-
Hogan M, LeGrange J and Austin B 1983 Dependence of DNA helix flexibility on base composition Nature 304 752-4
-
(1983)
Nature
, vol.304
, Issue.5928
, pp. 752-754
-
-
Hogan, M.1
Legrange, J.2
Austin, B.3
-
20
-
-
0033521211
-
Wrapping of flanking non-operator DNA in lac repressor-operator complexes: Implications for DNA looping
-
Tsodikov O V, Saecker R M, Melcher S E, Levandoski M M, Frank D E, Capp M W and Record M T 1999 Wrapping of flanking non-operator DNA in lac repressor-operator complexes: implications for DNA looping J. Mol. Biol. 294 639-55
-
(1999)
J. Mol. Biol.
, vol.294
, Issue.3
, pp. 639-655
-
-
Tsodikov, O.V.1
Saecker, R.M.2
Melcher, S.E.3
Levandoski, M.M.4
Frank, D.E.5
Capp, M.W.6
Record, M.T.7
-
21
-
-
33644676435
-
Volume-exclusion effects in tethered-particle experiments: Bead size matters
-
Segall D E, Nelson P C and Phillips R 2006 Volume-exclusion effects in tethered-particle experiments: bead size matters Phys. Rev. Lett. 96 088306
-
(2006)
Phys. Rev. Lett.
, vol.96
, Issue.8
, pp. 088306
-
-
Segall, D.E.1
Nelson, P.C.2
Phillips, R.3
-
22
-
-
35448944463
-
Colloidal particle motion as a diagnostic of DNA conformational transitions
-
Nelson P C 2007 Colloidal particle motion as a diagnostic of DNA conformational transitions Curr. Opin. Colloid Interface Sci. 12 307-13
-
(2007)
Curr. Opin. Colloid Interface Sci.
, vol.12
, Issue.6
, pp. 307-313
-
-
Nelson, P.C.1
-
23
-
-
85174988521
-
Tethered particle motion: Theory and experiment for looped and unlooped DNA
-
Han L, Towles K, Beausang J F, Garcia H, Phillips R and Nelson P 2008 Tethered particle motion: theory and experiment for looped and unlooped DNA Biophys. J. 94 2573
-
(2008)
Biophys. J.
, vol.94
, pp. 2573
-
-
Han, L.1
Towles, K.2
Beausang, J.F.3
Garcia, H.4
Phillips, R.5
Nelson, P.6
-
24
-
-
54749084305
-
Interconvertible lactose repressor-DNA looped complexes revealed by single-molecule experiments
-
Wong O K, Guthold M, Erie D A and Gelles J 2008 Interconvertible lactose repressor-DNA looped complexes revealed by single-molecule experiments PLoS Biol. 6 e232-1-4
-
(2008)
PLoS Biol.
, vol.6
, Issue.9
, pp. 232
-
-
Wong, O.K.1
Guthold, M.2
Erie, D.A.3
Gelles, J.4
-
25
-
-
43349099320
-
Single-molecule manipulation reveals supercoiling-dependent modulation of lac repressor-mediated DNA looping
-
Normanno D, Vanzi F and Pavone F S 2008 Single-molecule manipulation reveals supercoiling-dependent modulation of lac repressor-mediated DNA looping Nucl. Acids Res. 36 2505-13
-
(2008)
Nucl. Acids Res.
, vol.36
, Issue.8
, pp. 2505-2513
-
-
Normanno, D.1
Vanzi, F.2
Pavone, F.S.3
-
26
-
-
66249118030
-
Concentration and length dependence of DNA looping in transcriptional regulation
-
Han L, Garcia H G, Blumberg S, Towles K B, Beausang J F, Nelson P C and Phillips R 2009 Concentration and length dependence of DNA looping in transcriptional regulation PLoS ONE 4 e5621
-
(2009)
PLoS ONE
, vol.4
, Issue.5
, pp. 5621
-
-
Han, L.1
Garcia, H.G.2
Blumberg, S.3
Towles, K.B.4
Beausang, J.F.5
Nelson, P.C.6
Phillips, R.7
-
27
-
-
19544379865
-
Localized single-stranded bubble mechanism for cyclization of short double helix DNA
-
Yan J and Marko J F 2004 Localized single-stranded bubble mechanism for cyclization of short double helix DNA Phys. Rev. Lett. 93 108108
-
(2004)
Phys. Rev. Lett.
, vol.93
, Issue.10
, pp. 108108
-
-
Yan, J.1
Marko, J.F.2
-
28
-
-
41349084347
-
Exact theory of kinkable elastic polymers
-
Wiggins P A, Nelson P C and Phillips R 2005 Exact theory of kinkable elastic polymers Phys. Rev. E 71 021909
-
(2005)
Phys. Rev.
, vol.71
, Issue.2
, pp. 021909
-
-
Wiggins, P.A.1
Nelson, P.C.2
Phillips, R.3
-
29
-
-
0001191247
-
DNA flexibility studied by covalent closure of short fragments into circles
-
Shore D, Langowski J and Baldwin R L 1981 DNA flexibility studied by covalent closure of short fragments into circles Proc. Natl Acad. Sci. USA 170 4833-7
-
(1981)
Proc. Natl Acad. Sci. USA
, vol.78
, Issue.8
, pp. 4833-4837
-
-
Shore, D.1
Langowski, J.2
Baldwin, R.L.3
-
30
-
-
0021022977
-
Energetics of DNA twisting: I. Relation between twist and cyclization probability
-
Shore D and Baldwin R L 1983 Energetics of DNA twisting: I. Relation between twist and cyclization probability J. Mol. Biol. 170 957-81
-
(1983)
J. Mol. Biol.
, vol.170
, Issue.4
, pp. 957-981
-
-
Shore, D.1
Baldwin, R.L.2
-
31
-
-
0026766290
-
Protein-induced bending and DNA cyclization
-
Kahn J D and Crothers D M 1992 Protein-induced bending and DNA cyclization Proc. Natl Acad. Sci. USA 89 6343-7
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, Issue.14
, pp. 6343-6347
-
-
Kahn, J.D.1
Crothers, D.M.2
-
32
-
-
14844342574
-
DNA twisting flexibility and the formation of sharply looped protein-DNA complexes
-
Cloutier T E and Widom J 2005 DNA twisting flexibility and the formation of sharply looped protein-DNA complexes Proc. Natl Acad. Sci. USA 102 3634-50
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, Issue.10
, pp. 3645-3650
-
-
Cloutier, T.E.1
Widom, J.2
-
33
-
-
17244362931
-
Cyclization of short DNA fragments and bending fluctuations of the double helix
-
Du Q, Smith C, Shiffeldrim N, Vologodskaia M and Vologodskii A 2005 Cyclization of short DNA fragments and bending fluctuations of the double helix Proc. Natl Acad. Sci. USA 102 5397-402
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, Issue.15
, pp. 5397-5402
-
-
Du, Q.1
Smith, C.2
Shiffeldrim, N.3
Vologodskaia, M.4
Vologodskii, A.5
-
34
-
-
22244443662
-
Gapped DNA and cyclization of short DNA fragments
-
Du Q, Vologodskaia M, Kuhn H, Frank-Kamenetskii M and Vologodskii A 2005 Gapped DNA and cyclization of short DNA fragments Biophys. J. 88 4137-45
-
(2005)
Biophys. J.
, vol.88
, Issue.6
, pp. 4137-4145
-
-
Du, Q.1
Vologodskaia, M.2
Kuhn, H.3
Frank-Kamenetskii, M.4
Vologodskii, A.5
-
35
-
-
15744393452
-
DNA looping in gene regulation: From the assembly of macromolecular complexes to the control of transcriptional noise
-
Vilar J M and Saiz L 2005 DNA looping in gene regulation: from the assembly of macromolecular complexes to the control of transcriptional noise Curr. Opin. Genet. Dev. 15 136-44
-
(2005)
Curr. Opin. Genet. Dev.
, vol.15
, Issue.2
, pp. 136-144
-
-
Vilar, J.M.1
Saiz, L.2
-
36
-
-
19444387811
-
Bacterial repression loops require enhanced DNA flexibility
-
Becker N A, Kahn J D and Maher L J 2005 Bacterial repression loops require enhanced DNA flexibility J. Mol. Biol. 349 716-30
-
(2005)
J. Mol. Biol.
, vol.349
, Issue.4
, pp. 716-730
-
-
Becker, N.A.1
Kahn, J.D.2
Maher, L.J.3
-
37
-
-
26844548864
-
Bacterial repression loops require enhanced DNA flexibility
-
erratum
-
Becker N A, Kahn J D and Maher L J 2005 Bacterial repression loops require enhanced DNA flexibility J. Mol. Biol. 353 924-6 (erratum)
-
(2005)
J. Mol. Biol.
, vol.353
, Issue.4
, pp. 924-926
-
-
Becker, N.A.1
Kahn, J.D.2
Maher, L.J.3
-
38
-
-
0027510369
-
In vivo thermodynamic analysis of repression with and without looping in lac constructs-estimates of free and local lac repressor concentrations and of physical properties of a region of supercoiled plasmid DNA in vivo
-
Law S M, Bellomy G R, Schlax P J and Record M T 1993 In vivo thermodynamic analysis of repression with and without looping in lac constructs-estimates of free and local lac repressor concentrations and of physical properties of a region of supercoiled plasmid DNA in vivo J. Mol. Biol. 230 161-73
-
(1993)
J. Mol. Biol.
, vol.230
, Issue.1
, pp. 161-173
-
-
Law, S.M.1
Bellomy, G.R.2
Schlax, P.J.3
Record, M.T.4
-
39
-
-
34547642985
-
Effects of nucleoid proteins on DNA repression loop formation in Escherichia coli
-
Becker N A, Kahn J D and Maher L J III 2007 Effects of nucleoid proteins on DNA repression loop formation in Escherichia coli Nucl. Acids Res. 35 3988-4000
-
(2007)
Nucl. Acids Res.
, vol.35
, Issue.12
, pp. 3988-4000
-
-
Becker, N.A.1
Kahn, J.D.2
Maher, L.J.3
-
40
-
-
15744394192
-
Transcriptional regulation by the numbers: Models
-
Bintu L, Buchler N E, Garcia H G, Gerland U, Hwa T, Kondev J and Phillips R 2005 Transcriptional regulation by the numbers: models Curr. Opin. Genet. Dev. 15 116-24
-
(2005)
Curr. Opin. Genet. Dev.
, vol.15
, Issue.2
, pp. 116-124
-
-
Bintu, L.1
Buchler, N.E.2
Garcia, H.G.3
Gerland, U.4
Hwa, T.5
Kondev, J.6
Phillips, R.7
-
41
-
-
15744387380
-
Transcriptional regulation by the numbers: Applications
-
Bintu L, Buchler N E, Garcia H G, Gerland U, Hwa T, Kondev J, Kuhlman T and Phillips R 2005 Transcriptional regulation by the numbers: applications Curr. Opin. Genet. Dev. 15 125-35
-
(2005)
Curr. Opin. Genet. Dev.
, vol.15
, Issue.2
, pp. 125-135
-
-
Bintu, L.1
Buchler, N.E.2
Garcia, H.G.3
Gerland, U.4
Hwa, T.5
Kondev, J.6
Kuhlman, T.7
Phillips, R.8
-
42
-
-
29144433945
-
Inferring the in vivo looping properties of DNA
-
Saiz L, Rubi J M and Vilar J M 2005 Inferring the in vivo looping properties of DNA Proc. Natl Acad. Sci. USA 49 17642-5
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, Issue.49
, pp. 17642-17645
-
-
Saiz, L.1
Rubi, J.M.2
Vilar, J.M.3
-
43
-
-
34547852967
-
Analysis of in-vivo LacR-mediated gene repression based on the mechanics of DNA looping
-
Zhang Y, McEwen A E, Crothers D M and Levene S D 2006 Analysis of in-vivo LacR-mediated gene repression based on the mechanics of DNA looping PLoS ONE 1 e136-1-13
-
(2006)
PLoS ONE
, vol.1
, Issue.1
, pp. 136
-
-
Zhang, Y.1
McEwen, A.E.2
Crothers, D.M.3
Levene, S.D.4
-
44
-
-
0141482089
-
Supercoiling and denaturation in Gal repressor/heat unstable nucleoid protein (HU)-mediated DNA looping
-
Lia G, Bensimon D, Croquette V, Allemand J F, Dunlap D, Lewis D E A, Adhya S C and Finzi L 2003 Supercoiling and denaturation in Gal repressor/heat unstable nucleoid protein (HU)-mediated DNA looping Proc. Natl Acad. Sci. USA 100 11373-7
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, Issue.20
, pp. 11373-11377
-
-
Lia, G.1
Bensimon, D.2
Croquette, V.3
Allemand, J.F.4
Dunlap, D.5
Lewis, D.E.A.6
Adhya, S.C.7
Finzi, L.8
-
45
-
-
0025867008
-
Transcription by single molecules of RNA-polymerase observed by light-microscopy
-
Schafer D A, Gelles J, Sheetz M P and Landick R 1991 Transcription by single molecules of RNA-polymerase observed by light-microscopy Nature 352 444-8
-
(1991)
Nature
, vol.352
, Issue.6334
, pp. 444-448
-
-
Schafer, D.A.1
Gelles, J.2
Sheetz, M.P.3
Landick, R.4
-
46
-
-
33645322437
-
Novel tethered particle motion analysis of cI protein-mediated DNA looping in the regulation of bacteriophage lambda
-
Zurla C, Franzini A, Galli G, Dunlap D D, Lewis D E A, Adhya S and Finzi L 2006 Novel tethered particle motion analysis of cI protein-mediated DNA looping in the regulation of bacteriophage lambda J. Phys.: Condens. Matter 18 S225-34
-
(2006)
J. Phys.: Condens. Matter
, vol.18
, Issue.14
-
-
Zurla, C.1
Franzini, A.2
Galli, G.3
Dunlap, D.D.4
Lewis, D.E.A.5
Adhya, S.6
Finzi, L.7
-
47
-
-
31544452261
-
Real-time observation of DNA looping dynamics of type IIE restriction enzymes NaeI and NarI
-
van den Broek B, Vanzi F, Normanno D, Pavone F S and Wuite G J L 2006 Real-time observation of DNA looping dynamics of type IIE restriction enzymes NaeI and NarI Nucl. Acids Res. 34 167-74
-
(2006)
Nucl. Acids Res.
, vol.34
, Issue.1
, pp. 167-174
-
-
Van Den Broek, B.1
Vanzi, F.2
Normanno, D.3
Pavone, F.S.4
Wuite, G.J.L.5
-
48
-
-
77955866063
-
Calibration of tethered particle motion experiments
-
(New York: Springer) at press
-
Han L, Lui B H, Blumberg S, Beausang J F, Nelson P C and Phillips R 2008 Calibration of tethered particle motion experiments Mathematics of DNA Structure, Function and Interactions ed C J Benham et al (New York: Springer) at press
-
(2008)
Mathematics of DNA Structure, Function and Interactions
-
-
Han, L.1
Lui, B.H.2
Blumberg, S.3
Beausang, J.F.4
Nelson, P.C.5
Phillips, R.6
-
49
-
-
33845793417
-
Effect of supercoiling on formation of protein-mediated DNA loops
-
Purohit P K and Nelson P C 2006 Effect of supercoiling on formation of protein-mediated DNA loops Phys. Rev. E 74 061907
-
(2006)
Phys. Rev.
, vol.74
, Issue.6
, pp. 061907
-
-
Purohit, P.K.1
Nelson, P.C.2
-
50
-
-
33947614580
-
Effect of supercoiling on formation of protein-mediated DNA loops
-
erratum
-
Purohit P K and Nelson P C 2007 Effect of supercoiling on formation of protein-mediated DNA loops Phys. Rev. E 75 039903 (erratum)
-
(2007)
Phys. Rev.
, vol.75
, Issue.3
, pp. 039903
-
-
Purohit, P.K.1
Nelson, P.C.2
-
51
-
-
2442673068
-
Single-particle tracking for DNA tether length monitoring
-
Pouget N, Dennis C, Turlan C, Grigoriev M, Chandler M and Salome L 2004 Single-particle tracking for DNA tether length monitoring Nucl. Acids Res. 32 e73-1-7
-
(2004)
Nucl. Acids Res.
, vol.32
, Issue.9
, pp. 73
-
-
Pouget, N.1
Dennis, C.2
Turlan, C.3
Grigoriev, M.4
Chandler, M.5
Salome, L.6
-
54
-
-
0032937079
-
Estimating the persistence length of a worm-like chain molecule from force-extension measurements
-
Bouchiat C, Wang M D, Allemand J F, Strick T, Block S M and Croquette V 1999 Estimating the persistence length of a worm-like chain molecule from force-extension measurements Biophys. J. 76 409-13
-
(1999)
Biophys. J.
, vol.76
, Issue.1
, pp. 409-413
-
-
Bouchiat, C.1
Wang, M.D.2
Allemand, J.F.3
Strick, T.4
Block, S.M.5
Croquette, V.6
-
55
-
-
0028375446
-
Bending and twisting elasticity of DNA
-
Marko J F and Siggia E D 1994 Bending and twisting elasticity of DNA Macromolecules 27 981-8
-
(1994)
Macromolecules
, vol.27
, Issue.4
, pp. 981-988
-
-
Marko, J.F.1
Siggia, E.D.2
-
56
-
-
1542382023
-
Bending and twisting elasticity of DNA
-
erratum
-
Marko J F and Siggia E D 1996 Bending and twisting elasticity of DNA Macromolecules 29 4820 (erratum)
-
(1996)
Macromolecules
, vol.29
, Issue.13
, pp. 4820
-
-
Marko, J.F.1
Siggia, E.D.2
-
58
-
-
0032497194
-
Entropic elasticity of twist-storing polymers
-
Moroz J D and Nelson P 1998 Entropic elasticity of twist-storing polymers Macromolecules 31 6333-47
-
(1998)
Macromolecules
, vol.31
, Issue.18
, pp. 6333-6347
-
-
Moroz, J.D.1
Nelson, P.2
-
59
-
-
0032530555
-
DNA sequence-dependent deformability deduced from protein-DNA crystal complexes
-
the covariance matrices are available at
-
Olson W K, Gorin A A, Lu X-J, Hock L M and Zhurkin V B 1998 DNA sequence-dependent deformability deduced from protein-DNA crystal complexes Proc. Natl Acad. Sci. USA 95 11163-8 (the covariance matrices are available at http://rutchem.rutgers.edu/∼olson/cov-matrix.html)
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, Issue.19
, pp. 11163-11168
-
-
Olson, W.K.1
Gorin, A.A.2
Lu, X.-J.3
Hock, L.M.4
Zhurkin, V.B.5
-
60
-
-
68349143998
-
-
Morozov A V, Fortney K, Gaykalova D A, Studitsky V M, Widom J and Siggia E D 2008 Extrinsic and intrinsic nucleosome positioning signals arXiv:0805.4017
-
(2008)
Extrinsic and Intrinsic Nucleosome Positioning Signals
-
-
Morozov, A.V.1
Fortney, K.2
Gaykalova, D.A.3
Studitsky, V.M.4
Widom, J.5
Siggia, E.D.6
-
62
-
-
0031047888
-
Stretching DNA with optical tweezers
-
Wang M D, Yin H, Landick R, Gelles J and Block S M 1997 Stretching DNA with optical tweezers Biophys. J. 72 1335-46
-
(1997)
Biophys. J.
, vol.72
, Issue.3
, pp. 1335-1346
-
-
Wang, M.D.1
Yin, H.2
Landick, R.3
Gelles, J.4
Block, S.M.5
-
63
-
-
0141521419
-
Protein synthesis by single ribosomes
-
Vanzi F, Vladimirov S, Knudsen C R, Goldman Y E and Cooperman B S 2003 Protein synthesis by single ribosomes RNA 9 1174-9
-
(2003)
RNA
, vol.9
, Issue.10
, pp. 1174-1179
-
-
Vanzi, F.1
Vladimirov, S.2
Knudsen, C.R.3
Goldman, Y.E.4
Cooperman, B.S.5
-
64
-
-
37349067907
-
Elasticity of short DNA molecules: Theory and experiment for contour lengths of 0.6-7 νm
-
Seol Y, Li J, Nelson P C, Perkins T T and Betterton M D 2007 Elasticity of short DNA molecules: theory and experiment for contour lengths of 0.6-7 νm Biophys. J. 93 4360-73
-
(2007)
Biophys. J.
, vol.93
, Issue.12
, pp. 4360-4373
-
-
Seol, Y.1
Li, J.2
Nelson, P.C.3
Perkins, T.T.4
Betterton, M.D.5
-
65
-
-
84856396192
-
Entropic elasticity of double-strand DNA subject to simple spatial constraints
-
article P03019-1-28
-
Bouchiat C 2006 Entropic elasticity of double-strand DNA subject to simple spatial constraints J. Stat. Mech. Theor. Exp. (article P03019-1-28)
-
(2006)
J. Stat. Mech. Theor. Exp.
-
-
Bouchiat, C.1
-
66
-
-
34548688948
-
Spatial constraint corrections to the elasticity of double stranded DNA measured with magnetic tweezers
-
article P06001-1-22
-
Bouchiat C 2007 Spatial constraint corrections to the elasticity of double stranded DNA measured with magnetic tweezers J. Stat. Mech. Theor. Exp. (article P06001-1-22)
-
(2007)
J. Stat. Mech. Theor. Exp.
-
-
Bouchiat, C.1
-
67
-
-
33749243974
-
Sequence-dependent effects in the cyclization of short DNA
-
Czapla L, Swigon D and Olson W K 2006 Sequence-dependent effects in the cyclization of short DNA J. Chem. Theor. Comput. 2 685-95
-
(2006)
J. Chem. Theor. Comput.
, vol.2
, Issue.3
, pp. 685-695
-
-
Czapla, L.1
Swigon, D.2
Olson, W.K.3
-
68
-
-
33846129071
-
Entropic elasticity of DNA with a permanent kink
-
Li J Y, Nelson P C and Betterton M D 2006 Entropic elasticity of DNA with a permanent kink Macromolecules 39 8816-21
-
(2006)
Macromolecules
, vol.39
, Issue.25
, pp. 8816-8821
-
-
Li, J.Y.1
Nelson, P.C.2
Betterton, M.D.3
-
70
-
-
0030564945
-
Cooperative and anticooperative effects in binding of the first and second plasmid Osym operators to a LacI tetramer: Evidence for contributions of non-operator DNA binding by wrapping and looping
-
Levandoski M M, Tsodikov O V, Frank D E, Melcher S E, Saecker R M and Record M T 1996 Cooperative and anticooperative effects in binding of the first and second plasmid Osym operators to a LacI tetramer: evidence for contributions of non-operator DNA binding by wrapping and looping J. Mol. Biol. 260 697-717
-
(1996)
J. Mol. Biol.
, vol.260
, Issue.5
, pp. 697-717
-
-
Levandoski, M.M.1
Tsodikov, O.V.2
Frank, D.E.3
Melcher, S.E.4
Saecker, R.M.5
Record, M.T.6
-
71
-
-
0033580635
-
Thermodynamic analysis of unfolding and dissociation in lactose repressor protein
-
Barry J K and Matthews K S 1999 Thermodynamic analysis of unfolding and dissociation in lactose repressor protein Biochemistry 38 6520-8
-
(1999)
Biochemistry
, vol.38
, Issue.20
, pp. 6520-6528
-
-
Barry, J.K.1
Matthews, K.S.2
-
72
-
-
0029938053
-
Crystal structure of the lactose operon repressor and its complexes with DNA and inducer
-
Lewis M, Chang G, Horton N C, Kercher M A, Pace H C, Schumacher M A, Brennan R G and Lu P 1996 Crystal structure of the lactose operon repressor and its complexes with DNA and inducer Science 271 1247-54
-
(1996)
Science
, vol.271
, Issue.5253
, pp. 1247-1254
-
-
Lewis, M.1
Chang, G.2
Horton, N.C.3
Kercher, M.A.4
Pace, H.C.5
Schumacher, M.A.6
Brennan, R.G.7
Lu, P.8
-
74
-
-
0035850794
-
Structure of a variant of lac repressor with increased thermostability and decreased affinity for operator
-
Bell C E, Barry J, Matthews K S and Lewis M 2001 Structure of a variant of lac repressor with increased thermostability and decreased affinity for operator J. Mol. Biol. 313 99-109
-
(2001)
J. Mol. Biol.
, vol.313
, Issue.1
, pp. 99-109
-
-
Bell, C.E.1
Barry, J.2
Matthews, K.S.3
Lewis, M.4
-
75
-
-
0035812627
-
Crystallographic analysis of lac repressor bound to natural operator O1
-
Bell C E and Lewis M 2001 Crystallographic analysis of lac repressor bound to natural operator O1 J. Mol. Biol. 312 921-6
-
(2001)
J. Mol. Biol.
, vol.312
, Issue.5
, pp. 921-926
-
-
Bell, C.E.1
Lewis, M.2
-
77
-
-
33745595880
-
Modeling the Lac repressor-operator assembly: The influence of DNA looping on Lac repressor conformation
-
Swigon D, Coleman B D and Olson W K 2006 Modeling the Lac repressor-operator assembly: the influence of DNA looping on Lac repressor conformation Proc. Natl Acad. Sci. USA 103 9879-84
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, Issue.26
, pp. 9879-9884
-
-
Swigon, D.1
Coleman, B.D.2
Olson, W.K.3
-
78
-
-
3843114319
-
Intramolecular reaction in polycondensations: I. the theory of linear systems
-
Jacobson H and Stockmayer W H 1950 Intramolecular reaction in polycondensations: I. The theory of linear systems J. Chem. Phys. 18 1600-6
-
(1950)
J. Chem. Phys.
, vol.18
, Issue.12
, pp. 1600-1606
-
-
Jacobson, H.1
Stockmayer, W.H.2
-
79
-
-
0000323202
-
Macrocyclization equilibria: II. Poly(dimethylsiloxane)
-
Flory P J, Suter U W and Mutter M 1976 Macrocyclization equilibria: II. Poly(dimethylsiloxane) J. Am. Chem. Soc. 98 5733-9
-
(1976)
J. Am. Chem. Soc.
, vol.98
, Issue.19
, pp. 5733-5739
-
-
Flory, P.J.1
Suter, U.W.2
Mutter, M.3
-
80
-
-
0020403941
-
Loop formation in polynucleotide chains: I. Theory of hairpin loop closure
-
Marky N L and Olson W K 1982 Loop formation in polynucleotide chains: I. Theory of hairpin loop closure Biopolymers 21 2329-44
-
(1982)
Biopolymers
, vol.21
, Issue.12
, pp. 2329-2344
-
-
Marky, N.L.1
Olson, W.K.2
-
81
-
-
0000545475
-
Ring-closure probabilities for twisted wormlike chains-applications to DNA
-
Shimada J and Yamakawa H 1984 Ring-closure probabilities for twisted wormlike chains-applications to DNA Macromolecules 17 689-98
-
(1984)
Macromolecules
, vol.17
, Issue.4
, pp. 689-698
-
-
Shimada, J.1
Yamakawa, H.2
-
82
-
-
0022413269
-
Analysis of the ring-closure probabilities of isotropic wormlike chains: Application to duplex DNA
-
Hagerman P J 1985 Analysis of the ring-closure probabilities of isotropic wormlike chains: application to duplex DNA Biopolymers 24 1881-97
-
(1985)
Biopolymers
, vol.24
, Issue.10
, pp. 1881-1897
-
-
Hagerman, P.J.1
-
83
-
-
0023042215
-
Ring closure probabilities for DNA fragments by Monte Carlo simulation
-
Levene S D and Crothers D M 1986 Ring closure probabilities for DNA fragments by Monte Carlo simulation J. Mol. Biol. 189 61-72
-
(1986)
J. Mol. Biol.
, vol.189
, Issue.1
, pp. 61-72
-
-
Levene, S.D.1
Crothers, D.M.2
-
84
-
-
0031880930
-
Looping dynamics of linear DNA molecules and the effect of DNA curvature: A study by Brownian dynamics simulation
-
Merlitz H, Rippe K, Klenin K V and Langowski J 1998 Looping dynamics of linear DNA molecules and the effect of DNA curvature: a study by Brownian dynamics simulation Biophys. J. 74 773-9
-
(1998)
Biophys. J.
, vol.74
, Issue.2
, pp. 773-779
-
-
Merlitz, H.1
Rippe, K.2
Klenin, K.V.3
Langowski, J.4
-
85
-
-
0033539595
-
Equilibrium distributions of topological states in circular DNA: Interplay of supercoiling and knotting
-
Podtelezhnikov A A, Cozzarelli N R and Vologodskii A V 1999 Equilibrium distributions of topological states in circular DNA: interplay of supercoiling and knotting Proc. Natl Acad. Sci. USA 96 12974-9
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, Issue.23
, pp. 12974-12979
-
-
Podtelezhnikov, A.A.1
Cozzarelli, N.R.2
Vologodskii, A.V.3
-
86
-
-
0033729723
-
Multimerization-cyclization of DNA fragments as a method of conformational analysis
-
Podtelezhnikov A A, Mao C D, Seeman N C and Vologodskii A 2000 Multimerization-cyclization of DNA fragments as a method of conformational analysis Biophys. J. 79 2692-704
-
(2000)
Biophys. J.
, vol.79
, Issue.5
, pp. 2692-2704
-
-
Podtelezhnikov, A.A.1
Mao, C.D.2
Seeman, N.C.3
Vologodskii, A.4
-
87
-
-
0037215722
-
Statistical mechanics of sequence-dependent circular DNA and its application for DNA cyclization
-
Zhang Y L and Crothers D M 2003 Statistical mechanics of sequence-dependent circular DNA and its application for DNA cyclization Biophys. J. 84 136-53
-
(2003)
Biophys. J.
, vol.84
, Issue.1
, pp. 136-153
-
-
Zhang, Y.L.1
Crothers, D.M.2
-
88
-
-
7544230445
-
Effect of spontaneous curvature and sequence disorder on cyclization of fluctuating filaments
-
Rappaport S and Rabin Y 2004 Effect of spontaneous curvature and sequence disorder on cyclization of fluctuating filaments Macromolecules 37 7847-9
-
(2004)
Macromolecules
, vol.37
, Issue.21
, pp. 7847-7849
-
-
Rappaport, S.1
Rabin, Y.2
-
89
-
-
3943108162
-
Exact results for a semiflexible polymer chain in an aligning field
-
Spakowitz A J and Wang Z G 2004 Exact results for a semiflexible polymer chain in an aligning field Macromolecules 37 5814-23
-
(2004)
Macromolecules
, vol.37
, Issue.15
, pp. 5814-5823
-
-
Spakowitz, A.J.1
Wang, Z.G.2
-
90
-
-
28844465153
-
End-to-end distance vector distribution with fixed end orientations for the wormlike chain model
-
Spakowitz A J and Wang Z G 2005 End-to-end distance vector distribution with fixed end orientations for the wormlike chain model Phys. Rev. E 72 041802
-
(2005)
Phys. Rev.
, vol.72
, Issue.4
, pp. 041802
-
-
Spakowitz, A.J.1
Wang, Z.G.2
-
91
-
-
18244404581
-
Distribution functions, loop formation probabilities, and force-extension relations in a model for short double-stranded DNA molecules
-
Ranjith P, Sunil Kumar P B and Menon G I 2005 Distribution functions, loop formation probabilities, and force-extension relations in a model for short double-stranded DNA molecules Phys. Rev. Lett. 94 138102
-
(2005)
Phys. Rev. Lett.
, vol.94
, Issue.13
, pp. 138102
-
-
Ranjith, P.1
Sunil Kumar, P.B.2
Menon, G.I.3
-
92
-
-
27944487890
-
Statistics of loop formation along double helix DNAs
-
Yan J, Kawamura R and Marko J F 2005 Statistics of loop formation along double helix DNAs Phys. Rev. E 71 061905
-
(2005)
Phys. Rev.
, vol.71
, Issue.6
, pp. 061905
-
-
Yan, J.1
Kawamura, R.2
Marko, J.F.3
-
93
-
-
28844474555
-
Protein-mediated DNA loops: Effects of protein bridge size and kinks
-
Douarche N and Cocco S 2005 Protein-mediated DNA loops: effects of protein bridge size and kinks Phys. Rev. E 72 061902
-
(2005)
Phys. Rev.
, vol.72
, Issue.6
, pp. 061902
-
-
Douarche, N.1
Cocco, S.2
-
95
-
-
33644791019
-
Generalized theory of semiflexible polymers
-
Wiggins P A and Nelson P C 2006 Generalized theory of semiflexible polymers Phys. Rev. E 73 031906
-
(2006)
Phys. Rev.
, vol.73
, Issue.3
, pp. 031906
-
-
Wiggins, P.A.1
Nelson, P.C.2
-
96
-
-
33644891042
-
Wormlike chain statistics with twist and fixed ends
-
Spakowitz A J 2006 Wormlike chain statistics with twist and fixed ends Europhys. Lett. 73 684-90
-
(2006)
Europhys. Lett.
, vol.73
, Issue.5
, pp. 684-690
-
-
Spakowitz, A.J.1
-
98
-
-
0028365289
-
Quality and position of the three lac operators of E. coli define efficiency of repression
-
Oehler S, Amouyal M, Kolkhof P, von Wilcken-Bergmann B and Muller-Hill B 1994 Quality and position of the three lac operators of E. coli define efficiency of repression EMBO J. 13 3348-55
-
(1994)
EMBO J.
, vol.13
, pp. 3348-3355
-
-
Oehler, S.1
Amouyal, M.2
Kolkhof, P.3
Von Wilcken-Bergmann, B.4
Muller-Hill, B.5
-
99
-
-
18744391399
-
Structural dynamics of the lac repressor-DNA complex revealed by a multiscale simulation
-
Villa E, Balaeff A and Schulten K 2005 Structural dynamics of the lac repressor-DNA complex revealed by a multiscale simulation Proc. Natl Acad. Sci. USA 102 6783-8
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, Issue.19
, pp. 6783-6788
-
-
Villa, E.1
Balaeff, A.2
Schulten, K.3
-
100
-
-
2142855754
-
DNA supercoiling changes the spacing requirement of two lac operators for DNA loop formation with lac repressor
-
Krämer H, Amouyal M, Nordheim A and Müller-Hill B 1988 DNA supercoiling changes the spacing requirement of two lac operators for DNA loop formation with lac repressor EMBO J. 7 547-56
-
(1988)
EMBO J.
, vol.7
, pp. 547-556
-
-
Krämer, H.1
Amouyal, M.2
Nordheim, A.3
Müller-Hill, B.4
-
101
-
-
55849089592
-
Multilevel deconstruction of the in vivo behavior of looped DNA-protein complexes
-
Saiz L and Vilar J M G 2007 Multilevel deconstruction of the in vivo behavior of looped DNA-protein complexes PLoS ONE 2 e355-1-7
-
(2007)
PLoS ONE
, vol.2
, Issue.4
, pp. 355
-
-
Saiz, L.1
Vilar, J.M.G.2
-
102
-
-
33845810345
-
High flexibility of DNA on short length scales probed by atomic force microscopy
-
Wiggins P A, van der Heijden T, Moreno-Herrero F, Spakowitz A, Phillips R, Widom J, Dekker C and Nelson P C 2006 High flexibility of DNA on short length scales probed by atomic force microscopy Nat. Nanotech. 1 137-41
-
(2006)
Nat. Nanotech.
, vol.1
, Issue.2
, pp. 137-141
-
-
Wiggins, P.A.1
Van Der Heijden, T.2
Moreno-Herrero, F.3
Spakowitz, A.4
Phillips, R.5
Widom, J.6
Dekker, C.7
Nelson, P.C.8
-
103
-
-
0034227093
-
Conformational statistics of stiff macromolecules as solutions to partial differential equations on the rotation and motion groups
-
Chirikjian G S and Wang Y 2000 Conformational statistics of stiff macromolecules as solutions to partial differential equations on the rotation and motion groups Phys. Rev. E 62 880-92
-
(2000)
Phys. Rev.
, vol.62
, Issue.1
, pp. 880-892
-
-
Chirikjian, G.S.1
Wang, Y.2
-
104
-
-
44949249758
-
End-to-end distribution for a wormlike chain in arbitrary dimensions
-
Mehraeen S, Sudhanshu B, Koslover E F and Spakowitz A J 2008 End-to-end distribution for a wormlike chain in arbitrary dimensions Phys. Rev. E 77 0601803
-
(2008)
Phys. Rev.
, vol.77
, Issue.6
, pp. 061803
-
-
Mehraeen, S.1
Sudhanshu, B.2
Koslover, E.F.3
Spakowitz, A.J.4
-
105
-
-
37349076968
-
Intrinsic curvature of DNA influences LacR-mediated looping
-
Goyal S, Lillian T, Blumberg S, Meiners J-C, Meyhofer E and Perkins N C 2007 Intrinsic curvature of DNA influences LacR-mediated looping Biophys. J. 93 4342-59
-
(2007)
Biophys. J.
, vol.93
, Issue.12
, pp. 4342-4359
-
-
Goyal, S.1
Lillian, T.2
Blumberg, S.3
Meiners, J.-C.4
Meyhofer, E.5
Perkins, N.C.6
-
106
-
-
33244461554
-
Apparent persistence length renormalization of bent DNA
-
Kulic I M, Mohrbach H, Lobaskin V, Thaokar R and Schiessel H 2005 Apparent persistence length renormalization of bent DNA Phys. Rev. E 72 041905
-
(2005)
Phys. Rev.
, vol.72
, Issue.4
, pp. 041905
-
-
Kulic, I.M.1
Mohrbach, H.2
Lobaskin, V.3
Thaokar, R.4
Schiessel, H.5
-
107
-
-
34547659294
-
Effects of sequence disorder on DNA looping and cyclization
-
Popov Y O and Tkachenko A V 2007 Effects of sequence disorder on DNA looping and cyclization Phys. Rev. E 76 021901
-
(2007)
Phys. Rev.
, vol.76
, Issue.2
, pp. 021901
-
-
Popov, Y.O.1
Tkachenko, A.V.2
-
108
-
-
0000323998
-
A continuum rod model of sequence-dependent DNA structure
-
Manning R S, Maddocks J H and Kahn J D 1996 A continuum rod model of sequence-dependent DNA structure J. Chem. Phys. 105 5626-46
-
(1996)
J. Chem. Phys.
, vol.105
, Issue.13
, pp. 5626-5646
-
-
Manning, R.S.1
Maddocks, J.H.2
Kahn, J.D.3
-
109
-
-
3042572330
-
Implications of the dependence of the elastic properties of DNA on nucleotide sequence
-
Olson W K, Swigon D and Coleman B D 2004 Implications of the dependence of the elastic properties of DNA on nucleotide sequence Phil. Trans. R. Soc. Lond. A 362 1403-22
-
(2004)
Phil. Trans. R. Soc. Lond.
, vol.362
, Issue.1820
, pp. 1403-1422
-
-
Olson, W.K.1
Swigon, D.2
Coleman, B.D.3
-
110
-
-
44949122468
-
Sequence-dependent effects on the properties of semiflexible biopolymers
-
Zhou Z C and Joos B 2008 Sequence-dependent effects on the properties of semiflexible biopolymers Phys. Rev. E 77 061906
-
(2008)
Phys. Rev.
, vol.77
, Issue.6
, pp. 061906
-
-
Zhou, Z.C.1
Joos, B.2
-
111
-
-
0030058275
-
Effect of supercoiling on the juxtaposition and relative orientation of DNA sites
-
Vologodskii A and Cozzarelli N R 1996 Effect of supercoiling on the juxtaposition and relative orientation of DNA sites Biophys. J. 70 2548-56
-
(1996)
Biophys. J.
, vol.70
, Issue.6
, pp. 2548-2556
-
-
Vologodskii, A.1
Cozzarelli, N.R.2
-
112
-
-
0034126370
-
Monte Carlo implementation of supercoiled double-stranded DNA
-
Zhang Y, Zhou H and Ou-Yang Z-C 2000 Monte Carlo implementation of supercoiled double-stranded DNA Biophys. J. 78 1979-87
-
(2000)
Biophys. J.
, vol.78
, Issue.4
, pp. 1979-1987
-
-
Zhang, Y.1
Zhou, H.2
Ou-Yang, Z.-C.3
-
114
-
-
17944383822
-
Elastic rod model of a DNA loop in the lac operon
-
Balaeff A, Mahadevan L and Schulten K 1999 Elastic rod model of a DNA loop in the lac operon Phys. Rev. Lett. 83 4900-3
-
(1999)
Phys. Rev. Lett.
, vol.83
, Issue.23
, pp. 4900-4903
-
-
Balaeff, A.1
Mahadevan, L.2
Schulten, K.3
-
117
-
-
33645086141
-
Modeling DNA loops using the theory of elasticity
-
Balaeff A, Mahadevan L and Schulten K 2006 Modeling DNA loops using the theory of elasticity Phys. Rev. E 73 031919
-
(2006)
Phys. Rev.
, vol.73
, Issue.3
, pp. 031919
-
-
Balaeff, A.1
Mahadevan, L.2
Schulten, K.3
-
118
-
-
2342518189
-
Spontaneous sharp bending of double-stranded DNA
-
Cloutier T E and Widom J 2004 Spontaneous sharp bending of double-stranded DNA Mol. Cell 14 355-62
-
(2004)
Mol. Cell
, vol.14
, Issue.3
, pp. 355-362
-
-
Cloutier, T.E.1
Widom, J.2
-
119
-
-
0033585029
-
Designed hyperstable Lac repressor: DNA loop topologies suggest alternative loop geometries
-
Mehta R A and Kahn J D 1999 Designed hyperstable Lac repressor: DNA loop topologies suggest alternative loop geometries J. Mol. Biol. 294 67-77
-
(1999)
J. Mol. Biol.
, vol.294
, Issue.1
, pp. 67-77
-
-
Mehta, R.A.1
Kahn, J.D.2
-
120
-
-
25844459690
-
Single-molecule spectroscopic determination of Lac repressor-DNA loop conformation
-
Morgan M A, Okamoto K, Kahn J D and English D S 2005 Single-molecule spectroscopic determination of Lac repressor-DNA loop conformation Biophys. J. 89 2588-96
-
(2005)
Biophys. J.
, vol.89
, Issue.4
, pp. 2588-2596
-
-
Morgan, M.A.1
Okamoto, K.2
Kahn, J.D.3
English, D.S.4
-
121
-
-
0037306915
-
Fluorescence resonance energy transfer over ∼130 basepairs in hyperstable lac repressor-DNA loops
-
Edelman L M, Cheong R and Kahn J D 2003 Fluorescence resonance energy transfer over ∼130 basepairs in hyperstable lac repressor-DNA loops Biophys. J. 84 1131-45
-
(2003)
Biophys. J.
, vol.84
, Issue.2
, pp. 1131-1145
-
-
Edelman, L.M.1
Cheong, R.2
Kahn, J.D.3
-
122
-
-
43149113705
-
Geometry of mediating protein affects the probability of loop formation in DNA
-
Agrawal N J, Radhakrishnan R and Purohit P K 2008 Geometry of mediating protein affects the probability of loop formation in DNA Biophys. J. 94 3150-8
-
(2008)
Biophys. J.
, vol.94
, Issue.8
, pp. 3150-3158
-
-
Agrawal, N.J.1
Radhakrishnan, R.2
Purohit, P.K.3
|