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Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 10, 2005, Pages 3645-3650

DNA twisting flexibility and the formation of sharply looped protein-DNA complexes

(2) Cloutier, T E a Widom, J a

a NORTHWESTERN UNIVERSITY (United States)

Author keywords

Activation; Gene regulation; Repression

Indexed keywords

DNA;

ARTICLE; COMPLEX FORMATION; CYCLIZATION; DNA DENATURATION; DNA PROTEIN COMPLEX; PRIORITY JOURNAL; THEORETICAL STUDY;

DNA; GENE EXPRESSION REGULATION; NUCLEIC ACID CONFORMATION; PROTEINS;

EID: 14844342574 PISSN: 00278424 EISSN: None Source Type: Journal
DOI: 10.1073/pnas.0409059102 Document Type: Article

Times cited : (191)

References (52)

1
- 0025946047
- Gralla, J. D. (1991) Cell 66, 415-418.
- (1991) Cell , vol.66 , pp. 415-418
- Gralla, J.D.¹

2
- 0026624977
- Schleif, R. (1992) Annu. Rev. Biochem. 61, 199-223.
- (1992) Annu. Rev. Biochem. , vol.61 , pp. 199-223
- Schleif, R.¹

3
- 0028801067
- Rippe, K., von Hippel, P. H. & Langowski, J. (1995) Trends Biochem. Sci. 20, 500-506.
- (1995) Trends Biochem. Sci. , vol.20 , pp. 500-506
- Rippe, K.¹ Von Hippel, P.H.² Langowski, J.³

4
- 0042622638
- Vilar, J. M. G. & Leibler, S. (2003) J. Mol. Biol. 331, 981-989.
- (2003) J. Mol. Biol. , vol.331 , pp. 981-989
- Vilar, J.M.G.¹ Leibler, S.²

5
- 0032479079
- Blackwood, E. M. & Kadonaga, J. T. (1998) Science 281, 60-63.
- (1998) Science , vol.281 , pp. 60-63
- Blackwood, E.M.¹ Kadonaga, J.T.²

6
- 0028968936
- Zeller, R. W., Griffith, J. D., Moore, J. G., Kirchhamer, C. V., Britten, R. J. & Davidson, E. H. (1995) Proc. Natl. Acad. Sci. USA 92, 2989-2993.
- (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 2989-2993
- Zeller, R.W.¹ Griffith, J.D.² Moore, J.G.³ Kirchhamer, C.V.⁴ Britten, R.J.⁵ Davidson, E.H.⁶

7
- 0025891698
- Su, W., Jackson, S., Tjian, R. & Echols, H. (1991) Genes Dev. 5, 820-826.
- (1991) Genes Dev. , vol.5 , pp. 820-826
- Su, W.¹ Jackson, S.² Tjian, R.³ Echols, H.⁴

8
- 4644349809
- Yasmin, R., Yeung, K. T., Chung, R. H., Gaczynska, M. E., Osmulski, P. A. & Noy, N. (2004) J. Mol. Biol. 343, 327-338.
- (2004) J. Mol. Biol. , vol.343 , pp. 327-338
- Yasmin, R.¹ Yeung, K.T.² Chung, R.H.³ Gaczynska, M.E.⁴ Osmulski, P.A.⁵ Noy, N.⁶

9
- 0037992395
- Richmond, T. J. & Davey, C. A. (2003) Nature 423, 145-150.
- (2003) Nature , vol.423 , pp. 145-150
- Richmond, T.J.¹ Davey, C.A.²

10
- 0029156139
- Lu, Q., Wallrath, L. L. & Elgin, S. C. (1995) EMBO J. 14, 4738-4746.
- (1995) EMBO J. , vol.14 , pp. 4738-4746
- Lu, Q.¹ Wallrath, L.L.² Elgin, S.C.³

11
- 0027459196
- Schild, C., Claret, F.-X., Wahli, W. & Wolffe, A. P. (1993) EMBO J. 12, 423-433.
- (1993) EMBO J. , vol.12 , pp. 423-433
- Schild, C.¹ Claret, F.-X.² Wahli, W.³ Wolffe, A.P.⁴

12
- 0024449642
- Minchin, S. D., Austin, S. & Dixon, R. A. (1989) EMBO J. 8, 3491-3499.
- (1989) EMBO J. , vol.8 , pp. 3491-3499
- Minchin, S.D.¹ Austin, S.² Dixon, R.A.³

13
- 0027510369
- Law, S. M., Bellomy, G. R., Schlax, P. J. & Record, M. T. (1993) J. Mol. Biol. 230, 161-173.
- (1993) J. Mol. Biol. , vol.230 , pp. 161-173
- Law, S.M.¹ Bellomy, G.R.² Schlax, P.J.³ Record, M.T.⁴

14
- 0029975889
- Muller, J., Oehler, S. & Muller-Hill, B. (1996) J. Mol. Biol. 257, 21-29.
- (1996) J. Mol. Biol. , vol.257 , pp. 21-29
- Muller, J.¹ Oehler, S.² Muller-Hill, B.³

15
- 0009699824
- Lee, D. H. & Schleif, R. F. (1989) Proc. Natl. Acad. Sci. USA 86, 476-480.
- (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 476-480
- Lee, D.H.¹ Schleif, R.F.²

16
- 3543060486
- Semsey, S., Tolstorukov, M. Y., Virnik, K., Zhurkin, V. B. & Adhya, S. (2004) Genes Dev. 18, 1898-1907.
- (2004) Genes Dev. , vol.18 , pp. 1898-1907
- Semsey, S.¹ Tolstorukov, M.Y.² Virnik, K.³ Zhurkin, V.B.⁴ Adhya, S.⁵

17
- 0022629947
- Takahashi, K., Vigneron, M., Matthes, H., Wildeman, A., Zenke, M. & Chambon, P. (1986) Nature 319, 121-126.
- (1986) Nature , vol.319 , pp. 121-126
- Takahashi, K.¹ Vigneron, M.² Matthes, H.³ Wildeman, A.⁴ Zenke, M.⁵ Chambon, P.⁶

18
- 0024298718
- Cohen, R. S. & Meselson, M. (1988) Nature 332, 856-858.
- (1988) Nature , vol.332 , pp. 856-858
- Cohen, R.S.¹ Meselson, M.²

19
- 0000545475
- Shimada, J. & Yamakawa, H. (1984) Macromolecules 17, 689-698.
- (1984) Macromolecules , vol.17 , pp. 689-698
- Shimada, J.¹ Yamakawa, H.²

20
- 0037215722
- Zhang, Y. & Crothers, D. M. (2003) Biophys. J. 84, 136-153.
- (2003) Biophys. J. , vol.84 , pp. 136-153
- Zhang, Y.¹ Crothers, D.M.²

21
- 0026796061
- Crothers. D. M., Drak, J., Kahn, J. D. & Levene, S. D. (1992) Methods Enzymol. 212, 3-29.
- (1992) Methods Enzymol. , vol.212 , pp. 3-29
- Crothers, D.M.¹ Drak, J.² Kahn, J.D.³ Levene, S.D.⁴

22
- 0036293430
- Vologodskaia, M. & Vologodskii, A. (2002) J. Mol. Biol. 317, 205-213.
- (2002) J. Mol. Biol. , vol.317 , pp. 205-213
- Vologodskaia, M.¹ Vologodskii, A.²

23
- 0001191247
- Shore, D., Langowski, J. & Baldwin, R. L. (1981) Proc. Natl. Acad. Sci. USA 78, 4833-4837.
- (1981) Proc. Natl. Acad. Sci. USA , vol.78 , pp. 4833-4837
- Shore, D.¹ Langowski, J.² Baldwin, R.L.³

24
- 0023746243
- Hagerman, P. J. (1988) Annu. Rev. Biophys. Biophys. Chem. 17, 265-286.
- (1988) Annu. Rev. Biophys. Biophys. Chem. , vol.17 , pp. 265-286
- Hagerman, P.J.¹

25
- 0025272593
- Hagerman, P. J. & Ramadevi, V. A. (1990) J. Mol. Biol. 212, 351-362.
- (1990) J. Mol. Biol. , vol.212 , pp. 351-362
- Hagerman, P.J.¹ Ramadevi, V.A.²

26
- 0025355712
- Taylor, W. H. & Hagerman, P. J. (1990) J. Mol. Biol. 212, 363-376.
- (1990) J. Mol. Biol. , vol.212 , pp. 363-376
- Taylor, W.H.¹ Hagerman, P.J.²

27
- 0032497194
- Moroz, J. D. & Nelson, P. (1998) Macromolecules 31, 6333-6347.
- (1998) Macromolecules , vol.31 , pp. 6333-6347
- Moroz, J.D.¹ Nelson, P.²

28
- 0041305824
- Bryant, Z., Stone, M. D., Gore, J., Smith, S. B., Cozzarelli, N. R. & Bustamante, C. (2003) Nature 424, 338-341.
- (2003) Nature , vol.424 , pp. 338-341
- Bryant, Z.¹ Stone, M.D.² Gore, J.³ Smith, S.B.⁴ Cozzarelli, N.R.⁵ Bustamante, C.⁶

29
- 0021022977
- Shore, D. & Baldwin, R. L. (1983) J. Mol. Biol. 170, 957-981.
- (1983) J. Mol. Biol. , vol.170 , pp. 957-981
- Shore, D.¹ Baldwin, R.L.²

30
- 2342518189
- Cloutier, T. E. & Widom, J. (2004) Mol. Cell 14, 355-362.
- (2004) Mol. Cell , vol.14 , pp. 355-362
- Cloutier, T.E.¹ Widom, J.²

31
- 0035704707
- Widom, J. (2001) Q. Rev. Biophys. 34, 269-324.
- (2001) Q. Rev. Biophys. , vol.34 , pp. 269-324
- Widom, J.¹

32
- 19544379865
- Yan, J. & Marko, J. F. (2004) Phys. Rev. Lett. 93, 108108.
- (2004) Phys. Rev. Lett. , vol.93 , pp. 108108
- Yan, J.¹ Marko, J.F.²

33
- 14844358760
- in press
- Wiggins, P. A., Phillips, R. & Nelson, P. C. (2005) Phys. Rev. E Stat. Phys. Plasmas Fluids Relat. Interdiscip. Top., in press.
- (2005) Phys. Rev. E Stat. Phys. Plasmas Fluids Relat. Interdiscip. Top.
- Wiggins, P.A.¹ Phillips, R.² Nelson, P.C.³

34
- 14844345092
- cond-mat/0411358 v1
- Chakrabarti, B. & Levine, A. J. (2004) e-Print Archive, http://xxx.lanl.gov, cond-mat/0411358 v1.
- (2004) e-Print Archive
- Chakrabarti, B.¹ Levine, A.J.²

35
- 14844357962
- cond-mat/0410591 v1
- Popov, Y. O. & Tkachenko, A. V. (2004) e-Print Archive, http://xxx.lanl.gov, cond-mat/0410591 v1.
- (2004) e-Print Archive
- Popov, Y.O.¹ Tkachenko, A.V.²

36
- 0028864424
- Guéron, M. & Leroy, J.-L. (1995) Methods Enzymol. 261, 383-413.
- (1995) Methods Enzymol. , vol.261 , pp. 383-413
- Guéron, M.¹ Leroy, J.-L.²

37
- 0000777707
- Ramstein, J. & Lavery, R. (1988) Proc. Natl. Acad. Sci. USA 85, 7231-7235.
- (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 7231-7235
- Ramstein, J.¹ Lavery, R.²

38
- 0001883517
- Guéron, M. & Leroy, J.-L. (1992) Nucleic Acids Mol. Biol. 6, 1-22.
- (1992) Nucleic Acids Mol. Biol. , vol.6 , pp. 1-22
- Guéron, M.¹ Leroy, J.-L.²

39
- 0016850069
- Crick, F. H. C. & Klug, A. (1975) Nature 255, 530-533.
- (1975) Nature , vol.255 , pp. 530-533
- Crick, F.H.C.¹ Klug, A.²

40
- 0028289189
- Kahn, J. D., Yun, E. & Crothers, D. M. (1994) Nature 368, 163-166.
- (1994) Nature , vol.368 , pp. 163-166
- Kahn, J.D.¹ Yun, E.² Crothers, D.M.³

41
- 0028804849
- McAteer, K., Ellis, P. D. & Kennedy, M. A. (1995) Nucleic Acids Res. 23, 3962-3966.
- (1995) Nucleic Acids Res. , vol.23 , pp. 3962-3966
- McAteer, K.¹ Ellis, P.D.² Kennedy, M.A.³

42
- 0031562553
- Han, W., Lindsay, S. M., Dlakic, M. & Harrington, R. E. (1997) Nature 386, 563.
- (1997) Nature , vol.386 , pp. 563
- Han, W.¹ Lindsay, S.M.² Dlakic, M.³ Harrington, R.E.⁴

43
- 0030596081
- Rivetti, C., Guthold, M. & Bustamante, C. (1996) J. Mol. Biol. 264, 919-932.
- (1996) J. Mol. Biol. , vol.264 , pp. 919-932
- Rivetti, C.¹ Guthold, M.² Bustamante, C.³

44
- 0023645101
- Borowiec, J. A., Zhang, L., Sasse-Dwight, S. & Gralla, J. D. (1987) J. Mol. Biol. 196, 101-111.
- (1987) J. Mol. Biol. , vol.196 , pp. 101-111
- Borowiec, J.A.¹ Zhang, L.² Sasse-Dwight, S.³ Gralla, J.D.⁴

45
- 0022521842
- Hochschild, A. & Ptashne, M. (1986) Cell 44, 681-687.
- (1986) Cell , vol.44 , pp. 681-687
- Hochschild, A.¹ Ptashne, M.²

46
- 0032760667
- Fitzgerald, D. J. & Anderson, J. N. (1999) J. Mol. Biol. 293, 477-491.
- (1999) J. Mol. Biol. , vol.293 , pp. 477-491
- Fitzgerald, D.J.¹ Anderson, J.N.²

47
- 11844303478
- Chen, L. & Widom, J. (2005) Cell 120, 37-48.
- (2005) Cell , vol.120 , pp. 37-48
- Chen, L.¹ Widom, J.²

48
- 0033751954
- Podtelezhnikov, A. A. & Vologodskii, A. V. (2000) Macromolecules 33, 2767-2771.
- (2000) Macromolecules , vol.33 , pp. 2767-2771
- Podtelezhnikov, A.A.¹ Vologodskii, A.V.²

49
- 0034697997
- Schulz, A., Langowski, J. & Rippe, K. (2000) J. Mol. Biol. 300, 709-725.
- (2000) J. Mol. Biol. , vol.300 , pp. 709-725
- Schulz, A.¹ Langowski, J.² Rippe, K.³

50
- 0035895244
- Harmer, T., Wu, M. & Schleif, R. (2001) Proc. Natl. Acad. Sci. USA 98, 427-431.
- (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 427-431
- Harmer, T.¹ Wu, M.² Schleif, R.³

51
- 0034089394
- Bell, C. E. & Lewis, M. (2000) Nat. Struct. Biol. 7, 209-214.
- (2000) Nat. Struct. Biol. , vol.7 , pp. 209-214
- Bell, C.E.¹ Lewis, M.²

52
- 0032530555
- Olson, W. K., Gorin, A. A., Lu, X., Hock, L. M. & Zhurkin, V. B. (1998) Proc. Natl. Acad. Sci. USA 95, 11163-11168.
- (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 11163-11168
- Olson, W.K.¹ Gorin, A.A.² Lu, X.³ Hock, L.M.⁴ Zhurkin, V.B.⁵

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