Supercoiling and denaturation in Gal repressor/heat unstable nucleoid protein (HU)-mediated DNA looping

Proceedings of the National Academy of Sciences of the United States of America

Volumn 100, Issue 20, 2003, Pages 11373-11377

  Lia, Giuseppe ^a,b   Bensimon, David ^b   Croquette, Vincent ^b   Allemand, Jean Francois ^b   Dunlap, David ^c   Lewis, Dale E A ^d   Adhya, Sankar ^d   Finzi, Laura ^a  

^a UNIVERSITY OF MILAN   (Italy)

^b ECOLE NORMALE SUPÉRIEURE   (France)

^c SAN RAFFAELE HOSPITAL   (Italy)

^d NATIONAL CANCER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; GAL REPRESSOR PROTEIN; GENE PRODUCT; UNCLASSIFIED DRUG;

ARTICLE; DNA RECOMBINATION; DNA REPLICATION; DNA STRUCTURE; DNA TRANSCRIPTION; ENERGY TRANSFER; ESCHERICHIA COLI; IN VITRO STUDY; IN VIVO STUDY; MACROMOLECULE; OPERON; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DENATURATION; PROTEIN DNA INTERACTION; PROTEIN STABILITY; REGULATORY MECHANISM; TEMPERATURE DEPENDENCE; THERMODYNAMICS; TRANSCRIPTION REGULATION;

DNA, SUPERHELICAL; GALACTOSE; NUCLEIC ACID CONFORMATION; NUCLEOPROTEINS; PROTEIN DENATURATION; REPRESSOR PROTEINS; THERMODYNAMICS; TRANSCRIPTION, GENETIC;

ESCHERICHIA COLI;

EID: 0141482089     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.2034851100     Document Type: Article

References (31)

1. Irani, M. H., Orosz, L. & Adhya, S. (1983) Cell 32, 783-788.
2. Aki, T., Choy, H. E. & Adhya, S. (1996) Genes Cells 1, 179-188.
3. Choy, H. E., Park, S. W., Parrack, P. & Adhya, S. (1995) Proc. Natl. Acad. Sci. USA 92, 7327-7331.
4. Strick, T. R., Allemand, J. F., Bensimon, D. & Croquette, V. (1996) Science 271, 1835-1837.
5. Grosse, C. & Croquette, V. (2002) Biophys. J. 82, 3314-3329.
6. Strick, T. R., Allemand, J. F., Croquette V. & Bensimon, D. (1998) J. Stat. Phys. 93, 647-672.
7. Rief, M., Fernandez, J. & Gaub, H. (1998) Phys. Rev. Lett. 81, 4764-4767.
8. Marko, J. F. & Siggia, E. D. (1997) Biophys. J. 73, 2173-2178.
9. Geanacopoulos, M., Vasmetzis, G., Zhurkin, V. B. & Adhya, S. (2001) Nat. Struct. Biol. 8, 432-436.
10. Liphardt, J., Onoa, B., Smith, S. B., Tinoco, I., Jr., & Bustamante, C. (2001) Science 292, 733-737.
11. Whitson, P. A., Hsieh, W.-T., Wells, R. & Matthews, K. S. (1987) J. Biol. Chem. 262, 4943-4946.
12. Hsieh, W.-T., Whitson, P., Matthews,K. S. & Wells, R. D. (1987) J. Biol. Chem. 262, 14583-14591.
13. Finzi, L. & Gelles, J. (1995) Science 267, 378-380.
14. Strick, T. R., Croquette, V. & Bensimon, D. (1998) Proc. Natl. Acad. Sci. USA 95, 10578-10583.
15. Allemand, J.-F., Bensimon, D., Lavery, R. & Croquette, V. (1998) Proc. Natl. Acad. Sci. USA 95, 14152-14157.
16. Hwa, T., Marinari, E., Sneppen, K. & Tang, L. (2003) Proc. Natl. Acad. Sci. USA 100, 4411-4416.
17. Aki, T. & Adhya, S. (1997) EMBO J. 16, 3666-3674.
18. Bonnefoy, E., Takahashi, M. & Rouvière-Yaniv, J. (1994) J. Mol. Biol. 242, 116-129.
19. Castaing, B., Zelwer, C., Laval, J. & Boiteux, S. (1995) J. Biol. Chem. 270, 10291-10296.
20. Kobryn, K., Lavoie, D. & Chaconas, G. (1999) J. Mol. Biol. 289, 777-784.
21. Grove, A., Galeone, A., Mayol, L. & Geiduschek, E. P. (1996) J. Mol. Biol. 260, 196-206.
22. Grove, A. & Lim, L. (2001) J. Mol. Biol. 311, 491-502.
23. LeCaptain, D. J., Michel, M. A. & Van Orden, A. (2001) Analyst 126, 1279-1284.
24. Kamashev, D. & Rouvière-Yaniv, R. (2000) EMBO J. 19, 6527-6535.
25. Bujalowski, W. & Lohman T. M. (1987) J. Mol. Biol. 195, 897-907.
26. Overman, L. B., Bujalowski, W. & Lohman, T. (1988) Biochemistry 27, 456-471.
27. Forde, N. R., Izhaky, D., Woodcock, G. R., Wuite, G. J. & Bustamante, C. (2002) Proc. Natl. Acad. Sci. USA 99, 11682-11687.
28. Adhya, S. (1987) in Escherichia coli and Salmonella typhmirium ed. Neidhardt, F. (Am. Soc. Microbiol., Washington, DC) pp. 1503-1512.
29. Claret, L. & Rouvière-Yaniv, J. (1997) J. Mol. Biol. 273, 93-104.
30. Wei, Y., Lee, J. M., Richmond, C., Blattner, F. R., Rafalski, J. A. & LaRossa, R. A. (2001) J. Bacteriol. 183, 545-556.
31. Azam, T. A. & Ishihama, A. (1999) J. Biol. Chem. 274, 33105-33113.