Protonated arginine and protonated lysine: Hydration and its effect on the stability of salt-bridge structures

Journal of Physical Chemistry B

Volumn 113, Issue 29, 2009, Pages 9995-10000

  Gao, Bing ^a   Wyttenbach, Thomas ^a   Bowers, Michael T ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINES; AMINO ACIDS; BINDING SITES; CELL MEMBRANES; DYES; HYDRATES; HYDRATION; HYDROGEN; HYDROGEN BONDS; IONIZATION OF LIQUIDS; MASS SPECTROMETRY; MOLECULES; NUCLEAR ENERGY; POTENTIAL ENERGY;

ANIONIC GROUPS; BRIDGE STRUCTURES; CARBOXYL GROUPS; CATIONIC GROUPS; CHARGE SOLVATION; DEGREE OF HYDRATION; DRIFT CELLS; GLOBAL MINIMA; INTRAMOLECULAR HYDROGEN BOND; INTRAMOLECULAR INTERACTIONS; IONIC GROUP; PROTONATED; SALT BRIDGES; SIDE CHAINS; THEORETICAL STRUCTURE; WATER BINDING; WATER BRIDGES; WATER MOLECULE;

BINDING ENERGY;

EID: 67650841850     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp903307h     Document Type: Article

References (54)

1. Ball, P. Chem Rev 2008, 108, 74-108.
2. Zong, C. H.; Papoian, G. A.; Ulander, J.; Wolynes, P. G. J. Am. Chem. Soc. 2006, 128, 5168-5176.
3. Pace, C. N.; Trevino, S.; Prabhakaran, E.; Scholtz, J. M. Philos Trans. R. Soc., B 2004, 359, 1225-1234.
4. Mattos, C.; Clark, A. C. Arch. Biochem. Biophys. 2008, 469, 118-131.
5. Fernandez, A.; Scott, R. Biophys. J. 2003, 85, 1914-1928.
6. Fernandez, A.; Scheraga, H. A. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 113-118.
7. Baumketner, A.; Bernstein, S. L.; Wyttenbach, T.; Bitan, G.; Teplow, D. B.; Bowers, M. T.; Shea, J. E. Protein Sci. 2006, 15, 420-428.
8. Bernstein, S. L.; Wyttenbach, T.; Baumketner, A.; Shea, J. E.; Bitan, G.; Teplow, D. B.; Bowers, M. T. J. Am. Chem. Soc. 2005, 127, 2075-2084.
9. Kamariotis, A.; Boyarkin, O. V.; Mercier, S. R.; Beck, R. D.; Bush, M. F.; Williams, E. R.; Rizzo, T. R. J. Am. Chem. Soc. 2006, 128, 905-916.
10. Kohtani, M.; Breaux, G. A.; Jarrold, M. F. J. Am. Chem. Soc. 2004, 126, 1206-1213.
11. Lemoff, A. S.; Williams, E. R. J. Am. Soc. Mass Spectrom. 2004, 15, 1014-1024.
12. Lemoff, A. S.; Bush, M. F.; Wu, C. C.; Williams, E. R. J. Am. Chem. Soc. 2005, 127, 10276-10286.
13. Mercier, S. R.; Boyarkin, O. V.; Kamariotis, A.; Guglielmi, M.; Tavernelli, I.; Cascella, M.; Rothlisberger, U.; Rizzo, T. R. J. Am. Chem. Soc. 2006, 128, 16938-16943.
14. Michaux, C.; Wouters, J.; Jacquemin, D.; Perpete, E. A. Chem. Phys. Lett. 2007, 445, 57-61.
15. Rozman, M. J. Am. Soc. Mass Spectrom. 2005, 16, 1846-1852.
16. Wincel, H. Int. J. Mass Spectrom. 2006, 251, 23-31.
17. Wincel, H. Chem. Phys. Lett. 2007, 439, 157-161.
18. Hoaglund-Hyzer, C. S.; Counterman, A. E.; Clemmer, D. E. Chem. Rev. 1999, 99, 3037-3079.
19. Benesch, J. L. P.; Ruotolo, B. T.; Simmons, D. A.; Robinson, C. V. Chem. Rev. 2007, 107, 3544-3567.
20. Dongre, A. R.; Jones, J. L.; Somogyi, A.; Wysocki, V. H. J. Am. Chem. Soc. 1996, 118, 8365-8374.
21. Goncharov, V. A. Biophys. J. 2005, 89, 4139-4148.
22. Hudgins, R. R.; Ratner, M. A.; Jarrold, M. F. J. Am. Chem. Soc. 1998, 120, 12974-12975.
23. Jarrold, M. F. Phys. Chem. Chem. Phys. 2007, 9, 1659-1671.
24. Harrison, A. G. Mass Spectrom. Rev. 1997, 16, 201-217.
25. Bleiholder, C.; Suhai, S.; Paizs, B. J. Am. Soc. Mass Spectrom. 2006, 17, 1275-1281.
26. Bouchoux, G.; Desaphy, S.; Bourcier, S.; Malosse, C.; Bimbong, R. N. B. J. Phys. Chem. B 2008, 112, 3410-3419.
27. Wyttenbach, T.; Witt, M.; Bowers, M. T. Int. J. Mass Spectrom. 1999, 183, 243-252.
28. Forbes, M. W.; Bush, M. F.; Polfer, N. C.; Oomens, J.; Dunbar, R. C.; Williams, E. R.; Jockusch, R. A. J. Phys. Chem. A 2007, 111, 11759-11770.
29. Bush, M. F.; O'Brien, J. T.; Prell, J. S.; Saykally, R. J.; Williams, E. R. J. Am. Chem. Soc. 2007, 129, 1612-1622.
30. Rozman, M.; Srzic, D.; Klasinc, L. Int. J. Mass Spectrom. 2006, 253, 201-206.
31. Lemoff, A. S.; Bush, M. F.; O'Brien, J. T.; Williams, E. R. J. Phys. Chem. A 2006, 110, 8433-8442.
32. Bush, M. F.; Forbes, M. W.; Jockusch, R. A.; Oomens, J.; Polfer, N. C.; Saykally, R. J.; Williams, E. R. J. Phys. Chem. A 2007, 111, 7753-7760.
33. Bush, M. F.; Oomens, J.; Williams, E. R. J. Phys. Chem. A 2009, 113, 431-438.
34. Liu, D. F.; Wyttenbach, T.; Barran, P. E.; Bowers, M. T. J. Am. Chem. Soc. 2003, 125, 8458-8464.
35. Wyttenbach, T.; Liu, D. F.; Bowers, M. T. Int. J. Mass Spectrom. 2005, 240, 221-232.
36. Liu, D. F.; Wyttenbach, T.; Bowers, M. T. Int. J. Mass Spectrom. 2004, 236, 81-90.
37. Wyttenbach, T.; Kemper, P. R.; Bowers, M. T. Int. J. Mass Spectrom. 2001, 212, 13-23.
38. Wyttenbach, T.; Paizs, B.; Barran, P.; Breci, L.; Liu, D. F.; Suhai, S.; Wysocki, V. H.; Bowers, M. T. J. Am. Chem. Soc. 2003, 125, 13768-13775.
39. Gao, B.; Liu, Z. F. J. Chem. Phys. 2005, 123.
40. Case, D. A.; et al. Amber 8; University of California: San Francisco, CA, 2004.
41. Frisch, M. J.; et al. Gaussian 03, revision C02; Wallingford, CT, 2004.
42. Simon, S.; Duran, M.; Dannenberg, J. J. J. Chem. Phys. 1996, 105, 11024-11031.
43. Boys, S. F.; Bernardi, F. Mol. Phys. 1970, 19, 553-&.
44. Gao, B.; Wyttenbach, T.; Bowers, M. T. J. Am. Chem. Soc. 2009, 131, 4695-4701.
45. Linstrom, P. J., Mallard, W. G., Eds. NIST Chemistry WebBook, NIST Standard Reference Database Number 69, National Institute of Standards and Technology: Gaithersburg, MD, http://webbook.nist.gov, April 1, 2009.
46. Wyttenbach, T.; Witt, M.; Bowers, M. T. J. Am. Chem. Soc. 2000, 122, 3458-3464.
47. Zhang, Q.; Carpenter, C. J.; Kemper, P. R.; Bowers, M. T. J. Am. Chem. Soc. 2003, 125, 3341-3352.
48. Aikens, C. M.; Gordon, M. S. J. Am. Chem. Soc. 2006, 128, 12835-12850.
49. Paxton, A. T.; Harper, J. B. Mol. Phys. 2004, 102, 953-958.
50. Xu, S. J.; Nilles, M.; Bowen, K. H. J. Chem. Phys. 2003, 119, 10696-10701.
51. Haranczyk, M.; Gutowski, M. J. Chem. Phys. 2008, 128.
52. Jockusch, R. A.; Lemoff, A. S.; Williams, E. R. J. Phys. Chem. A 2001, 105, 10929-10942.
53. Bush, M. F.; Prell, J. S.; Saykally, R. J.; Williams, E. R. J. Am. Chem. Soc. 2007, 129, 13544-13553.
54. Im, S.; Jang, S. W.; Lee, S.; Lee, Y.; Kim, B. J. Phys. Chem. A 2008, 112, 9767-9770.