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Volumn 27, Issue 9, 2006, Pages 957-964

An automated procedure to identify biomedical articles that contain cancer-associated gene variants

Author keywords

Bioinformatics; CDKN2A; Conditional random fields; Database; Genomics; p16; Relevance ranking; Text mining

Indexed keywords

CYCLIN DEPENDENT KINASE 2; CYCLIN DEPENDENT KINASE 2A; PROTEIN P16; UNCLASSIFIED DRUG;

EID: 33748376061     PISSN: 10597794     EISSN: None     Source Type: Journal    
DOI: 10.1002/humu.20363     Document Type: Article
Times cited : (10)

References (37)
  • 2
    • 3242795899 scopus 로고    scopus 로고
    • Retrieval and classification of dental research articles
    • Bartling WC, Schleyer TK, Visweswaran S. 2003. Retrieval and classification of dental research articles. Adv Dent Res 17:115-120.
    • (2003) Adv Dent Res , vol.17 , pp. 115-120
    • Bartling, W.C.1    Schleyer, T.K.2    Visweswaran, S.3
  • 3
    • 0002652285 scopus 로고    scopus 로고
    • A maximum entropy approach to natural language processing
    • Berger A, Della Pietra S, Della Pietra V. 1996. A maximum entropy approach to natural language processing. Comput Linguist 22:39-71.
    • (1996) Comput Linguist , vol.22 , pp. 39-71
    • Berger, A.1    Della Pietra, S.2    Della Pietra, V.3
  • 4
    • 0345863927 scopus 로고    scopus 로고
    • The Unified Medical Language System (UMLS): Integrating biomedical terminology
    • Bodenreider O. 2004. The Unified Medical Language System (UMLS): integrating biomedical terminology. Nucleic Acids Res 32:D267-D270.
    • (2004) Nucleic Acids Res , vol.32
    • Bodenreider, O.1
  • 5
    • 0042334852 scopus 로고    scopus 로고
    • Creating a text classifier to detect radiology reports describing mediastinal findings associated with inhalational anthrax and other disorders
    • Chapman WW, Cooper GF, Hanbury P, Chapman BE, Harrison LH, Wagner MM. 2003. Creating a text classifier to detect radiology reports describing mediastinal findings associated with inhalational anthrax and other disorders. J Am Med Inform Assoc 10:494-503.
    • (2003) J Am Med Inform Assoc , vol.10 , pp. 494-503
    • Chapman, W.W.1    Cooper, G.F.2    Hanbury, P.3    Chapman, B.E.4    Harrison, L.H.5    Wagner, M.M.6
  • 7
    • 17244380380 scopus 로고    scopus 로고
    • A survey of current work in biomedical text mining
    • Cohen AM, Hersh WR. 2005. A survey of current work in biomedical text mining. Brief Bioinform 6:57-71.
    • (2005) Brief Bioinform , vol.6 , pp. 57-71
    • Cohen, A.M.1    Hersh, W.R.2
  • 8
    • 0142228873 scopus 로고    scopus 로고
    • A family of online algorithms for category ranking
    • Crammer K, Singer Y. 2003. A family of online algorithms for category ranking. J Mach Learn Res 3:1025-1058.
    • (2003) J Mach Learn Res , vol.3 , pp. 1025-1058
    • Crammer, K.1    Singer, Y.2
  • 9
    • 13444279975 scopus 로고    scopus 로고
    • Assisting medical annotation in Swiss-Prot using statistical classifiers
    • Dobrokhotov PB, Goutte C, Veuthey AL, Gaussier E. 2005. Assisting medical annotation in Swiss-Prot using statistical classifiers. Int J Med Inform 74:317-324.
    • (2005) Int J Med Inform , vol.74 , pp. 317-324
    • Dobrokhotov, P.B.1    Goutte, C.2    Veuthey, A.L.3    Gaussier, E.4
  • 12
    • 0141596005 scopus 로고    scopus 로고
    • Tumour necrosis and microvascular proliferation are associated with 9p deletion and CDKN2A alterations in 1p/19q-deleted oligodendrogliomas
    • Godfraind C, Rousseau E, Ruchoux MM, Scaravilli F, Vikkula M. 2003. Tumour necrosis and microvascular proliferation are associated with 9p deletion and CDKN2A alterations in 1p/19q-deleted oligodendrogliomas. Neuropathol Appl Neurobiol 29:462-471.
    • (2003) Neuropathol Appl Neurobiol , vol.29 , pp. 462-471
    • Godfraind, C.1    Rousseau, E.2    Ruchoux, M.M.3    Scaravilli, F.4    Vikkula, M.5
  • 14
    • 2642544224 scopus 로고    scopus 로고
    • The androgen receptor gene mutations database.(ARDB): 2004 Update
    • Gottlieb B, Beitel LK, Wu JH, Trifiro M. 2004. The androgen receptor gene mutations database.(ARDB): 2004 update. Hum Mutat 23:527-533.
    • (2004) Hum Mutat , vol.23 , pp. 527-533
    • Gottlieb, B.1    Beitel, L.K.2    Wu, J.H.3    Trifiro, M.4
  • 15
    • 13444266370 scopus 로고    scopus 로고
    • Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders
    • Hamosh A, Scott AF, Amberger JS, Bocchini CA, McKusick VA. 2005. Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders. Nucleic Acids Res 33(Database issue):D514-D517.
    • (2005) Nucleic Acids Res , vol.33 , Issue.DATABASE ISSUE
    • Hamosh, A.1    Scott, A.F.2    Amberger, J.S.3    Bocchini, C.A.4    McKusick, V.A.5
  • 16
    • 2342507856 scopus 로고    scopus 로고
    • The challenge of documenting mutation across the genome: The Human Genome Variation Society approach
    • Horaitis O, Cotton RG. 2004. The challenge of documenting mutation across the genome: the Human Genome Variation Society approach. Hum Mutat 23:447-452.
    • (2004) Hum Mutat , vol.23 , pp. 447-452
    • Horaitis, O.1    Cotton, R.G.2
  • 17
    • 2442467847 scopus 로고    scopus 로고
    • T cells associated with tumor regression recognize frameshifted products of the CDKN2A tumor suppressor gene locus and a mutated HLA class I gene product
    • Huang J, El-Gamil M, Dudley ME, Li YF, Rosenberg SA, Robbins PF. 2004. T cells associated with tumor regression recognize frameshifted products of the CDKN2A tumor suppressor gene locus and a mutated HLA class I gene product. J Immunol 172:6057-6064.
    • (2004) J Immunol , vol.172 , pp. 6057-6064
    • Huang, J.1    El-Gamil, M.2    Dudley, M.E.3    Li, Y.F.4    Rosenberg, S.A.5    Robbins, P.F.6
  • 20
    • 22244459539 scopus 로고    scopus 로고
    • Text-mining and information-retrieval services for molecular biology
    • Krallinger M, Valencia A. 2005. Text-mining and information-retrieval services for molecular biology. Genome Biol 6:224.
    • (2005) Genome Biol , vol.6 , pp. 224
    • Krallinger, M.1    Valencia, A.2
  • 22
    • 0034916009 scopus 로고    scopus 로고
    • PubMed: Bridging the information gap
    • McEntyre J, Lipman D. 2001. PubMed: bridging the information gap. CMAJ 164:1317-1319.
    • (2001) CMAJ , vol.164 , pp. 1317-1319
    • McEntyre, J.1    Lipman, D.2
  • 23
    • 0034323678 scopus 로고    scopus 로고
    • A novel germline mutation, P48T, in the CDKN2A/p16 gene in a patient with pancreatic carcinoma
    • Moore PS, Zamboni G, Falconi M, Bassi C, Scarpa A. 2000. A novel germline mutation, P48T, in the CDKN2A/p16 gene in a patient with pancreatic carcinoma. Hum Mutat 16:447-448.
    • (2000) Hum Mutat , vol.16 , pp. 447-448
    • Moore, P.S.1    Zamboni, G.2    Falconi, M.3    Bassi, C.4    Scarpa, A.5
  • 24
    • 14044254746 scopus 로고    scopus 로고
    • Textpresso: An ontology-based information retrieval and extraction system for biological literature
    • Muller HM, Kenny EE, Sternberg PW. 2004. Textpresso: an ontology-based information retrieval and extraction system for biological literature. PLoS Biol 2:e309.
    • (2004) PLoS Biol , vol.2
    • Muller, H.M.1    Kenny, E.E.2    Sternberg, P.W.3
  • 25
    • 5044232709 scopus 로고    scopus 로고
    • The CDKN2A database: Integrating allelic variants with evolution, structure, function, and disease association
    • Murphy JA, Barrantes-Reynolds R, Kocherlakota R, Bond JP, Greenblatt MS. 2004. The CDKN2A database: Integrating allelic variants with evolution, structure, function, and disease association. Hum Mutat 24:296-304.
    • (2004) Hum Mutat , vol.24 , pp. 296-304
    • Murphy, J.A.1    Barrantes-Reynolds, R.2    Kocherlakota, R.3    Bond, J.P.4    Greenblatt, M.S.5
  • 27
    • 0041561141 scopus 로고    scopus 로고
    • Abnormalities of tumor suppressor gene p16 in pancreatic carcinoma: Immunohistochemical and genetic findings compared with clinicopathological parameters
    • Ohtsubo K, Watanabe H, Yamaguchi Y, Hu YX, Motoo Y, Okai T, Sawabu N. 2003. Abnormalities of tumor suppressor gene p16 in pancreatic carcinoma: immunohistochemical and genetic findings compared with clinicopathological parameters. J Gastroenterol 38:663-671.
    • (2003) J Gastroenterol , vol.38 , pp. 663-671
    • Ohtsubo, K.1    Watanabe, H.2    Yamaguchi, Y.3    Hu, Y.X.4    Motoo, Y.5    Okai, T.6    Sawabu, N.7
  • 28
    • 33746036207 scopus 로고    scopus 로고
    • The ongoing search for efficient web search algorithms
    • Robinson S. 2004. The ongoing search for efficient web search algorithms. SIAM News 37.
    • (2004) SIAM News , pp. 37
    • Robinson, S.1
  • 29
    • 14544306487 scopus 로고    scopus 로고
    • A statistical approach to scanning the biomedical literature for pharmacogenetics knowledge
    • Rubin DL, Thorn CF, Klein TE, Altman RB. 2005. A statistical approach to scanning the biomedical literature for pharmacogenetics knowledge. J Am Med Inform Assoc 12:121-129.
    • (2005) J Am Med Inform Assoc , vol.12 , pp. 121-129
    • Rubin, D.L.1    Thorn, C.F.2    Klein, T.E.3    Altman, R.B.4
  • 31
    • 0034746254 scopus 로고    scopus 로고
    • CDKNA2A mutation analysis, protein expression, and deletion mapping of chromosome 9p in conventional clear-cell renal carcinomas: Evidence for a second tumor suppressor gene proximal to CDKN2A
    • Schraml P, Struckmann K, Bednar R, Fu W, Gasser T, Wilber K, Kononen J, Sauter G, Mihatsch MJ, Moch H. 2001. CDKNA2A mutation analysis, protein expression, and deletion mapping of chromosome 9p in conventional clear-cell renal carcinomas: evidence for a second tumor suppressor gene proximal to CDKN2A. Am J Pathol 158:593-601.
    • (2001) Am J Pathol , vol.158 , pp. 593-601
    • Schraml, P.1    Struckmann, K.2    Bednar, R.3    Fu, W.4    Gasser, T.5    Wilber, K.6    Kononen, J.7    Sauter, G.8    Mihatsch, M.J.9    Moch, H.10
  • 32
    • 22144489899 scopus 로고    scopus 로고
    • INK4a/ARF: A multifunctional tumor suppressor locus
    • Sharpless NE. 2005. INK4a/ARF: a multifunctional tumor suppressor locus. Mutat Res 576:22-38.
    • (2005) Mutat Res , vol.576 , pp. 22-38
    • Sharpless, N.E.1
  • 34
    • 0034661248 scopus 로고    scopus 로고
    • Analysis of the p16INK4, pHARF, p15, TP53, and MDM2 genes and their prognostic implications in osteosarcoma and Ewing sarcoma
    • Tsuchiya T, Sekine K, Hinohara S, Namiki T, Nobori T, Kaneko Y. 2000. Analysis of the p16INK4, pHARF, p15, TP53, and MDM2 genes and their prognostic implications in osteosarcoma and Ewing sarcoma. Cancer Genet Cytogenet 120:91-98.
    • (2000) Cancer Genet Cytogenet , vol.120 , pp. 91-98
    • Tsuchiya, T.1    Sekine, K.2    Hinohara, S.3    Namiki, T.4    Nobori, T.5    Kaneko, Y.6
  • 37
    • 12744250266 scopus 로고    scopus 로고
    • An evaluation of statistical spam filtering techniques
    • Zhang L, Zhu J, Yao T. 2004. An evaluation of statistical spam filtering techniques. ACM Trans Asian Lang Inf Process 3:243-269.
    • (2004) ACM Trans Asian Lang Inf Process , vol.3 , pp. 243-269
    • Zhang, L.1    Zhu, J.2    Yao, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.