-
1
-
-
1042264072
-
Protein localization in proteomics
-
10.1016/j.cbpa.2003.11.003 15036156
-
Davis TN Protein localization in proteomics Curr Opin Chem Biol 2004, 8(1):49-53. 10.1016/j.cbpa.2003.11.003 15036156
-
(2004)
Curr Opin Chem Biol
, vol.8
, Issue.1
, pp. 49-53
-
-
Davis, T.N.1
-
2
-
-
34248508844
-
Approaches for systematic proteome exploration
-
10.1016/j.bioeng.2007.01.001 17376740
-
Falk R Ramström M Ståhl S Hober S Approaches for systematic proteome exploration Biomol Eng 2007, 24(2):155-168. 10.1016/ j.bioeng.2007.01.001 17376740
-
(2007)
Biomol Eng
, vol.24
, Issue.2
, pp. 155-168
-
-
Falk, R.1
Ramström, M.2
Ståhl, S.3
Hober, S.4
-
3
-
-
33644877439
-
Human protein reference database-2006 update
-
1347503 16381900 10.1093/nar/gkj141
-
Mishra GR Suresh M Kumaran K Kannabiran N Suresh S Bala P Shivakumar K Anuradha N Reddy R Raghavan TM et al Human protein reference database-2006 update Nucleic Acids Res 2006, 34: Database D411-414. 1347503 16381900 10.1093/nar/gkj141
-
(2006)
Nucleic Acids Res
-
-
Mishra, G.R.1
Suresh, M.2
Kumaran, K.3
Kannabiran, N.4
Suresh, S.5
Bala, P.6
Shivakumar, K.7
Anuradha, N.8
Reddy, R.9
Raghavan, T.M.10
-
4
-
-
33846041078
-
The Universal Protein Resource (UniProt)
-
The UniProt Consortium Database 1669721 17142230 10.1093/nar/gkl929
-
The UniProt Consortium The Universal Protein Resource (UniProt) Nucleic Acids Res 2007, 35: Database D193-197. 1669721 17142230 10.1093/nar/ gkl929
-
(2007)
Nucleic Acids Res
-
-
-
5
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
10.1038/75556 10802651
-
Ashburner M Ball CA Blake JA Botstein D Butler H Cherry JM Davis AP Dolinski K Dwight SS Eppig JT et al Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium Nat Genet 2000, 25(1):25-29. 10.1038/75556 10802651
-
(2000)
Nat Genet
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
6
-
-
2942624227
-
Advances in the prediction of protein targeting signals
-
10.1002/pmic.200300786 15174127
-
Schneider G Fechner U Advances in the prediction of protein targeting signals Proteomics 2004, 4(6):1571-1580. 10.1002/pmic.200300786 15174127
-
(2004)
Proteomics
, vol.4
, Issue.6
, pp. 1571-1580
-
-
Schneider, G.1
Fechner, U.2
-
7
-
-
0018791878
-
Predicted secondary structures of amino-terminal extension sequences of secreted proteins
-
10.1016/0014-5793(79)81351-4 467675
-
Austen BM Predicted secondary structures of amino-terminal extension sequences of secreted proteins FEBS Lett 1979, 103(2):308-313. 10.1016/ 0014-5793(79)81351-4 467675
-
(1979)
FEBS Lett
, vol.103
, Issue.2
, pp. 308-313
-
-
Austen, B.M.1
-
8
-
-
0020770479
-
Patterns of amino acids near signal-sequence cleavage sites
-
10.1111/j.1432-1033.1983.tb07424.x 6852022
-
von Heijne G Patterns of amino acids near signal-sequence cleavage sites Eur J Biochem 1983, 133(1):17-21. 10.1111/j.1432-1033.1983.tb07424.x 6852022
-
(1983)
Eur J Biochem
, vol.133
, Issue.1
, pp. 17-21
-
-
von Heijne, G.1
-
9
-
-
27644444255
-
Evaluating eukaryotic secreted protein prediction
-
1276785 16225690 10.1186/1471-2105-6-256
-
Klee EW Ellis LB Evaluating eukaryotic secreted protein prediction BMC Bioinformatics 2005, 6:256. 1276785 16225690 10.1186/1471-2105-6-256
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 256
-
-
Klee, E.W.1
Ellis, L.B.2
-
10
-
-
33947407688
-
Evaluation and comparison of mammalian subcellular localization prediction methods
-
1764480 17254308 10.1186/1471-2105-7-S5-S3
-
Sprenger J Fink JL Teasdale RD Evaluation and comparison of mammalian subcellular localization prediction methods BMC Bioinformatics 2006, 7(Suppl 5):S3. 1764480 17254308 10.1186/1471-2105-7-S5-S3
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.SUPPL. 3
-
-
Sprenger, J.1
Fink, J.L.2
Teasdale, R.D.3
-
11
-
-
0034331073
-
Finding nuclear localization signals
-
1083765 11258480 10.1093/embo-reports/kvd092
-
Cokol M Nair R Rost B Finding nuclear localization signals EMBO Rep 2000, 1(5):411-415. 1083765 11258480 10.1093/embo-reports/kvd092
-
(2000)
EMBO Rep
, vol.1
, Issue.5
, pp. 411-415
-
-
Cokol, M.1
Nair, R.2
Rost, B.3
-
12
-
-
33751011339
-
Immunodeficiency mutation databases (IDbases)
-
10.1002/humu.20405 17004234
-
Piirilä H Väliaho J Vihinen M Immunodeficiency mutation databases (IDbases) Hum Mutat 2006, 27(12):1200-1208. 10.1002/humu.20405 17004234
-
(2006)
Hum Mutat
, vol.27
, Issue.12
, pp. 1200-1208
-
-
Piirilä, H.1
Väliaho, J.2
Vihinen, M.3
-
13
-
-
34248385339
-
A survey of locus-specific database curation. Human Genome Variation Society
-
10.1136/jmg.2006.044081 17400791
-
Cotton RG Phillips K Horaitis O A survey of locus-specific database curation. Human Genome Variation Society J Med Genet 2007, 44(4):e72. 10.1136/jmg.2006.044081 17400791
-
(2007)
J Med Genet
, vol.44
, Issue.4
-
-
Cotton, R.G.1
Phillips, K.2
Horaitis, O.3
-
14
-
-
33750971454
-
Bioinformatic analysis of protein structure-function relationships: Case study of leukocyte elastase (ELA2) missense mutations
-
10.1002/humu.20407 16986121
-
Thusberg J Vihinen M Bioinformatic analysis of protein structure-function relationships: Case study of leukocyte elastase (ELA2) missense mutations Hum Mutat 2006, 27(12):1230-1243. 10.1002/ humu.20407 16986121
-
(2006)
Hum Mutat
, vol.27
, Issue.12
, pp. 1230-1243
-
-
Thusberg, J.1
Vihinen, M.2
-
15
-
-
65649108490
-
Pathogenic or not? And if so, then how? Studying the effects of missense mutations using bioinformatics methods
-
19267389
-
Thusberg J Vihinen M Pathogenic or not? And if so, then how? Studying the effects of missense mutations using bioinformatics methods Hum Mutat 2009. 19267389
-
(2009)
Hum Mutat
-
-
Thusberg, J.1
Vihinen, M.2
-
16
-
-
41149169150
-
Gain-of-function mutation of GATA-2 in acute myeloid transformation of chronic myeloid leukemia
-
2538883 18250304 10.1073/pnas.0711824105
-
Zhang SJ Ma LY Huang QH Li G Gu BW Gao XD Shi JY Wang YY Gao L Cai X Gain-of-function mutation of GATA-2 in acute myeloid transformation of chronic myeloid leukemia Proc Natl Acad Sci USA 2008, 105(6):2076-2081. 2538883 18250304 10.1073/pnas.0711824105
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, Issue.6
, pp. 2076-2081
-
-
Zhang, S.J.1
Ma, L.Y.2
Huang, Q.H.3
Li, G.4
Gu, B.W.5
Gao, X.D.6
Shi, J.Y.7
Wang, Y.Y.8
Gao, L.9
Cai, X.10
-
17
-
-
38049173572
-
A gain-of-function mutation in the HIF2A gene in familial erythrocytosis
-
2295209 18184961 10.1056/NEJMoa073123
-
Percy MJ Furlow PW Lucas GS Li X Lappin TR McMullin MF Lee FS A gain-of-function mutation in the HIF2A gene in familial erythrocytosis N Engl J Med 2008, 358(2):162-168. 2295209 18184961 10.1056/NEJMoa073123
-
(2008)
N Engl J Med
, vol.358
, Issue.2
, pp. 162-168
-
-
Percy, M.J.1
Furlow, P.W.2
Lucas, G.S.3
Li, X.4
Lappin, T.R.5
McMullin, M.F.6
Lee, F.S.7
-
18
-
-
46749098393
-
Evaluation of in silico splice tools for decision-making in molecular diagnosis
-
10.1002/humu.20765 18449911
-
Houdayer C Dehainault C Mattler C Michaux D Caux-Moncoutier V Pagès-Berhouet S d'Enghien CD Laugé A Castera L Gauthier-Villars M Evaluation of in silico splice tools for decision-making in molecular diagnosis Hum Mutat 2008, 29(7):975-982. 10.1002/humu.20765 18449911
-
(2008)
Hum Mutat
, vol.29
, Issue.7
, pp. 975-982
-
-
Houdayer, C.1
Dehainault, C.2
Mattler, C.3
Michaux, D.4
Caux-Moncoutier, V.5
Pagès-Berhouet, S.6
d'Enghien, C.D.7
Laugé, A.8
Castera, L.9
Gauthier-Villars, M.10
-
19
-
-
0342614926
-
Codon usage tabulated from international DNA sequence databases: Status for the year 2000
-
102460 10592250 10.1093/nar/28.1.292
-
Nakamura Y Gojobori T Ikemura T Codon usage tabulated from international DNA sequence databases: Status for the year 2000 Nucleic Acids Res 2000, 28(1):292. 102460 10592250 10.1093/nar/28.1.292
-
(2000)
Nucleic Acids Res
, vol.28
, Issue.1
, pp. 292
-
-
Nakamura, Y.1
Gojobori, T.2
Ikemura, T.3
-
20
-
-
0036300807
-
Characterization of disease-associated single amino acid polymorphisms in terms of sequence and structure properties
-
10.1006/jmbi.2001.5255 11812146
-
Ferrer-Costa C Orozco M de la Cruz X Characterization of disease-associated single amino acid polymorphisms in terms of sequence and structure properties J Mol Biol 2002, 315(4):771-786. 10.1006/ jmbi.2001.5255 11812146
-
(2002)
J Mol Biol
, vol.315
, Issue.4
, pp. 771-786
-
-
Ferrer-Costa, C.1
Orozco, M.2
de la Cruz, X.3
-
21
-
-
34848835086
-
Spectrum of disease-causing mutations in protein secondary structures
-
1995201 17727703 10.1186/1472-6807-7-56
-
Khan S Vihinen M Spectrum of disease-causing mutations in protein secondary structures BMC Struct Biol 2007, 7:56. 1995201 17727703 10.1186/1472-6807-7-56
-
(2007)
BMC Struct Biol
, vol.7
, pp. 56
-
-
Khan, S.1
Vihinen, M.2
-
22
-
-
1542577828
-
The amino-acid mutational spectrum of human genetic disease
-
329120 14611658 10.1186/gb-2003-4-11-r72
-
Vitkup D Sander C Church GM The amino-acid mutational spectrum of human genetic disease Genome Biol 2003, 4(11):R72. 329120 14611658 10.1186/ gb-2003-4-11-r72
-
(2003)
Genome Biol
, vol.4
, Issue.11
-
-
Vitkup, D.1
Sander, C.2
Church, G.M.3
-
23
-
-
18744407884
-
KinMutBase: A registry of disease-causing mutations in protein kinase domains
-
10.1002/humu.20166 15832311
-
Ortutay C Väliaho J Stenberg K Vihinen M KinMutBase: A registry of disease-causing mutations in protein kinase domains Hum Mutat 2005, 25(5):435-442. 10.1002/humu.20166 15832311
-
(2005)
Hum Mutat
, vol.25
, Issue.5
, pp. 435-442
-
-
Ortutay, C.1
Väliaho, J.2
Stenberg, K.3
Vihinen, M.4
-
24
-
-
0030569351
-
Sequence specificity in CpG mutation hotspots
-
10.1016/0014-5793(96)01075-7 8914970
-
Ollila J Lappalainen I Vihinen M Sequence specificity in CpG mutation hotspots FEBS Lett 1996, 396(2-3):119-122. 10.1016/0014-5793(96)01075-7 8914970
-
(1996)
FEBS Lett
, vol.396
, Issue.2-3
, pp. 119-122
-
-
Ollila, J.1
Lappalainen, I.2
Vihinen, M.3
-
25
-
-
4344675283
-
Impairment of SHOX nuclear localization as a cause for Leri-Weill syndrome
-
10.1242/jcs.01152 15173321
-
Sabherwal N Schneider KU Blaschke RJ Marchini A Rappold G Impairment of SHOX nuclear localization as a cause for Leri-Weill syndrome J Cell Sci 2004, 117(Pt 14):3041-3048. 10.1242/jcs.01152 15173321
-
(2004)
J Cell Sci
, vol.117
, Issue.PART 14
, pp. 3041-3048
-
-
Sabherwal, N.1
Schneider, K.U.2
Blaschke, R.J.3
Marchini, A.4
Rappold, G.5
-
26
-
-
0242536432
-
Mutations in the AIRE gene: Effects on subcellular location and transactivation function of the autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy protein
-
1288090 10677297 10.1086/302765
-
Björses P Halonen M Palvimo JJ Kolmer M Aaltonen J Ellonen P Perheentupa J Ulmanen I Peltonen L Mutations in the AIRE gene: Effects on subcellular location and transactivation function of the autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy protein Am J Hum Genet 2000, 66(2):378-392. 1288090 10677297 10.1086/302765
-
(2000)
Am J Hum Genet
, vol.66
, Issue.2
, pp. 378-392
-
-
Björses, P.1
Halonen, M.2
Palvimo, J.J.3
Kolmer, M.4
Aaltonen, J.5
Ellonen, P.6
Perheentupa, J.7
Ulmanen, I.8
Peltonen, L.9
-
27
-
-
12144291655
-
APECED-causing mutations in AIRE reveal the functional domains of the protein
-
10.1002/humu.20003 14974083
-
Halonen M Kangas H Rüppell T Ilmarinen T Ollila J Kolmer M Vihinen M Palvimo J Saarela J Ulmanen I et al APECED-causing mutations in AIRE reveal the functional domains of the protein Hum Mutat 2004, 23(3):245-257. 10.1002/humu.20003 14974083
-
(2004)
Hum Mutat
, vol.23
, Issue.3
, pp. 245-257
-
-
Halonen, M.1
Kangas, H.2
Rüppell, T.3
Ilmarinen, T.4
Ollila, J.5
Kolmer, M.6
Vihinen, M.7
Palvimo, J.8
Saarela, J.9
Ulmanen, I.10
-
28
-
-
25444446105
-
Functional analysis of SAND mutations in AIRE supports dominant inheritance of the G228W mutation
-
10.1002/humu.20224 16114041
-
Ilmarinen T Eskelin P Halonen M Rüppell T Kilpikari R Torres GD Kangas H Ulmanen I Functional analysis of SAND mutations in AIRE supports dominant inheritance of the G228W mutation Hum Mutat 2005, 26(4):322-331. 10.1002/humu.20224 16114041
-
(2005)
Hum Mutat
, vol.26
, Issue.4
, pp. 322-331
-
-
Ilmarinen, T.1
Eskelin, P.2
Halonen, M.3
Rüppell, T.4
Kilpikari, R.5
Torres, G.D.6
Kangas, H.7
Ulmanen, I.8
-
29
-
-
0042166134
-
Molecular mechanisms of Bartter syndrome caused by mutations in the BSND gene
-
10.1007/s00418-003-0535-2 12761627
-
Hayama A Rai T Sasaki S Uchida S Molecular mechanisms of Bartter syndrome caused by mutations in the BSND gene Histochem Cell Biol 2003, 119(6):485-493. 10.1007/s00418-003-0535-2 12761627
-
(2003)
Histochem Cell Biol
, vol.119
, Issue.6
, pp. 485-493
-
-
Hayama, A.1
Rai, T.2
Sasaki, S.3
Uchida, S.4
-
30
-
-
0037309679
-
Defective cellular localization of mutant ATP7B in Wilson's disease patients and hepatoma cell lines
-
10.1053/gast.2003.50066 12557139
-
Huster D Hoppert M Lutsenko S Zinke J Lehmann C Mössner J Berr F Caca K Defective cellular localization of mutant ATP7B in Wilson's disease patients and hepatoma cell lines Gastroenterology 2003, 124(2):335-345. 10.1053/gast.2003.50066 12557139
-
(2003)
Gastroenterology
, vol.124
, Issue.2
, pp. 335-345
-
-
Huster, D.1
Hoppert, M.2
Lutsenko, S.3
Zinke, J.4
Lehmann, C.5
Mössner, J.6
Berr, F.7
Caca, K.8
-
31
-
-
22144479426
-
A novel missense mutation in ABCA1 results in altered protein trafficking and reduced phosphatidylserine translocation in a patient with Scott syndrome
-
10.1182/blood-2004-05-2056 15790791
-
Albrecht C McVey JH Elliott JI Sardini A Kasza I Mumford AD Naoumova RP Tuddenham EG Szabo K Higgins CF A novel missense mutation in ABCA1 results in altered protein trafficking and reduced phosphatidylserine translocation in a patient with Scott syndrome Blood 2005, 106(2):542-549. 10.1182/blood-2004-05-2056 15790791
-
(2005)
Blood
, vol.106
, Issue.2
, pp. 542-549
-
-
Albrecht, C.1
McVey, J.H.2
Elliott, J.I.3
Sardini, A.4
Kasza, I.5
Mumford, A.D.6
Naoumova, R.P.7
Tuddenham, E.G.8
Szabo, K.9
Higgins, C.F.10
-
32
-
-
0038383284
-
Nucleolar localization of RPS19 protein in normal cells and mislocalization due to mutations in the nucleolar localization signals in 2 Diamond-Blackfan anemia patients: Potential insights into pathophysiology
-
10.1182/blood-2002-12-3878 12586610
-
Da Costa L Tchernia G Gascard P Lo A Meerpohl J Niemeyer C Chasis JA Fixler J Mohandas N Nucleolar localization of RPS19 protein in normal cells and mislocalization due to mutations in the nucleolar localization signals in 2 Diamond-Blackfan anemia patients: Potential insights into pathophysiology Blood 2003, 101(12):5039-5045. 10.1182/ blood-2002-12-3878 12586610
-
(2003)
Blood
, vol.101
, Issue.12
, pp. 5039-5045
-
-
Da Costa, L.1
Tchernia, G.2
Gascard, P.3
Lo, A.4
Meerpohl, J.5
Niemeyer, C.6
Chasis, J.A.7
Fixler, J.8
Mohandas, N.9
-
33
-
-
0037424367
-
Effects of mutations of ABCA1 in the first extracellular domain on subcellular trafficking and ATP binding/hydrolysis
-
10.1074/jbc.M206885200 12509412
-
Tanaka AR Abe-Dohmae S Ohnishi T Aoki R Morinaga G Okuhira K Ikeda Y Kano F Matsuo M Kioka N Effects of mutations of ABCA1 in the first extracellular domain on subcellular trafficking and ATP binding/ hydrolysis J Biol Chem 2003, 278(10):8815-8819. 10.1074/jbc.M206885200 12509412
-
(2003)
J Biol Chem
, vol.278
, Issue.10
, pp. 8815-8819
-
-
Tanaka, A.R.1
Abe-Dohmae, S.2
Ohnishi, T.3
Aoki, R.4
Morinaga, G.5
Okuhira, K.6
Ikeda, Y.7
Kano, F.8
Matsuo, M.9
Kioka, N.10
-
34
-
-
0037405331
-
Functional consequences of an LMNA mutation associated with a new cardiac and non-cardiac phenotype
-
10.1002/humu.10170 12673789
-
Charniot JC Pascal C Bouchier C Sebillon P Salama J Duboscq-Bidot L Peuchmaurd M Desnos M Artigou JY Komajda M Functional consequences of an LMNA mutation associated with a new cardiac and non-cardiac phenotype Hum Mutat 2003, 21(5):473-481. 10.1002/humu.10170 12673789
-
(2003)
Hum Mutat
, vol.21
, Issue.5
, pp. 473-481
-
-
Charniot, J.C.1
Pascal, C.2
Bouchier, C.3
Sebillon, P.4
Salama, J.5
Duboscq-Bidot, L.6
Peuchmaurd, M.7
Desnos, M.8
Artigou, J.Y.9
Komajda, M.10
-
35
-
-
0038239949
-
Dominant isolated renal magnesium loss is caused by misrouting of the Na+, K+-ATPase gamma-subunit
-
12763862
-
Meij IC Koenderink JB De Jong JC De Pont JJ Monnens LA Heuvel Van Den LP Knoers NV Dominant isolated renal magnesium loss is caused by misrouting of the Na+, K+-ATPase gamma-subunit Ann N Y Acad Sci 2003, 986:437-443. 12763862
-
(2003)
Ann N Y Acad Sci
, vol.986
, pp. 437-443
-
-
Meij, I.C.1
Koenderink, J.B.2
De Jong, J.C.3
De Pont, J.J.4
Monnens, L.A.5
Heuvel, L.P.6
Knoers, N.V.7
-
36
-
-
0033323810
-
A C619Y mutation in the human androgen receptor causes inactivation and mislocalization of the receptor with concomitant sequestration of SRC-1 (steroid receptor coactivator 1)
-
10.1210/me.13.12.2065 10598582
-
Nazareth LV Stenoien DL Bingman WE 3rd James AJ Wu C Zhang Y Edwards DP Mancini M Marcelli M Lamb DJ et al A C619Y mutation in the human androgen receptor causes inactivation and mislocalization of the receptor with concomitant sequestration of SRC-1 (steroid receptor coactivator 1) Mol Endocrinol 1999, 13(12):2065-2075. 10.1210/ me.13.12.2065 10598582
-
(1999)
Mol Endocrinol
, vol.13
, Issue.12
, pp. 2065-2075
-
-
Nazareth, L.V.1
Stenoien, D.L.2
Bingman III, W.E.3
James, A.J.4
Wu, C.5
Zhang, Y.6
Edwards, D.P.7
Mancini, M.8
Marcelli, M.9
Lamb, D.J.10
-
37
-
-
0037245023
-
Immunofluorescence analysis of neutrophil nonmuscle myosin heavy chain-A in MYH9 disorders: Association of subcellular localization with MYH9 mutations
-
12533692
-
Kunishima S Matsushita T Kojima T Sako M Kimura F Jo EK Inoue C Kamiya T Saito H Immunofluorescence analysis of neutrophil nonmuscle myosin heavy chain-A in MYH9 disorders: Association of subcellular localization with MYH9 mutations Lab Invest 2003, 83(1):115-122. 12533692
-
(2003)
Lab Invest
, vol.83
, Issue.1
, pp. 115-122
-
-
Kunishima, S.1
Matsushita, T.2
Kojima, T.3
Sako, M.4
Kimura, F.5
Jo, E.K.6
Inoue, C.7
Kamiya, T.8
Saito, H.9
-
38
-
-
33846154229
-
Intracellular distribution of a speech/language disorder associated FOXP2 mutant
-
10.1016/j.bbrc.2006.12.130 17196932
-
Mizutani A Matsuzaki A Momoi MY Fujita E Tanabe Y Momoi T Intracellular distribution of a speech/language disorder associated FOXP2 mutant Biochem Biophys Res Commun 2007, 353(4):869-874. 10.1016/ j.bbrc.2006.12.130 17196932
-
(2007)
Biochem Biophys Res Commun
, vol.353
, Issue.4
, pp. 869-874
-
-
Mizutani, A.1
Matsuzaki, A.2
Momoi, M.Y.3
Fujita, E.4
Tanabe, Y.5
Momoi, T.6
-
39
-
-
28744448792
-
Hidden localization motifs: Naturally occurring peroxisomal targeting signals in non-peroxisomal proteins
-
545800 15575971 10.1186/gb-2004-5-12-r97
-
Neuberger G Kunze M Eisenhaber F Berger J Hartig A Brocard C Hidden localization motifs: Naturally occurring peroxisomal targeting signals in non-peroxisomal proteins Genome Biol 2004, 5(12):R97. 545800 15575971 10.1186/gb-2004-5-12-r97
-
(2004)
Genome Biol
, vol.5
, Issue.12
-
-
Neuberger, G.1
Kunze, M.2
Eisenhaber, F.3
Berger, J.4
Hartig, A.5
Brocard, C.6
-
40
-
-
34547172596
-
A transforming mutation in the pleckstrin homology domain of AKT1 in cancer
-
10.1038/nature05933 17611497
-
Carpten JD Faber AL Horn C Donoho GP Briggs SL Robbins CM Hostetter G Boguslawski S Moses TY Savage S et al A transforming mutation in the pleckstrin homology domain of AKT1 in cancer Nature 2007, 448(7152):439-444. 10.1038/nature05933 17611497
-
(2007)
Nature
, vol.448
, Issue.7152
, pp. 439-444
-
-
Carpten, J.D.1
Faber, A.L.2
Horn, C.3
Donoho, G.P.4
Briggs, S.L.5
Robbins, C.M.6
Hostetter, G.7
Boguslawski, S.8
Moses, T.Y.9
Savage, S.10
-
41
-
-
0042632959
-
Alternative splicing controls myotonic dystrophy protein kinase structure, enzymatic activity, and subcellular localization
-
166319 12897125 10.1128/MCB.23.16.5489-5501.2003
-
Wansink DG van Herpen RE Coerwinkel-Driessen MM Groenen PJ Hemmings BA Wieringa B Alternative splicing controls myotonic dystrophy protein kinase structure, enzymatic activity, and subcellular localization Mol Cell Biol 2003, 23(16):5489-5501. 166319 12897125 10.1128/ MCB.23.16.5489-5501.2003
-
(2003)
Mol Cell Biol
, vol.23
, Issue.16
, pp. 5489-5501
-
-
Wansink, D.G.1
van Herpen, R.E.2
Coerwinkel-Driessen, M.M.3
Groenen, P.J.4
Hemmings, B.A.5
Wieringa, B.6
-
42
-
-
0037113890
-
A conditional mutation affecting localization of the Menkes disease copper ATPase. Suppression by copper supplementation
-
10.1074/jbc.M208737200 12221109
-
Kim BE Smith K Meagher CK Petris MJ A conditional mutation affecting localization of the Menkes disease copper ATPase. Suppression by copper supplementation J Biol Chem 2002, 277(46):44079-44084. 10.1074/ jbc.M208737200 12221109
-
(2002)
J Biol Chem
, vol.277
, Issue.46
, pp. 44079-44084
-
-
Kim, B.E.1
Smith, K.2
Meagher, C.K.3
Petris, M.J.4
-
43
-
-
0347320584
-
Cytoplasmic mislocalization of BRCA1 caused by cancer-associated mutations in the BRCT domain
-
10.1016/j.yexcr.2003.09.027 14729053
-
Rodriguez JA Au WW Henderson BR Cytoplasmic mislocalization of BRCA1 caused by cancer-associated mutations in the BRCT domain Exp Cell Res 2004, 293(1):14-21. 10.1016/j.yexcr.2003.09.027 14729053
-
(2004)
Exp Cell Res
, vol.293
, Issue.1
, pp. 14-21
-
-
Rodriguez, J.A.1
Au, W.W.2
Henderson, B.R.3
-
44
-
-
33746606474
-
Mitochondrial mislocalization and altered assembly of a cluster of Barth syndrome mutant tafazzins
-
2064234 16880272 10.1083/jcb.200605043
-
Claypool SM McCaffery JM Koehler CM Mitochondrial mislocalization and altered assembly of a cluster of Barth syndrome mutant tafazzins J Cell Biol 2006, 174(3):379-390. 2064234 16880272 10.1083/jcb.200605043
-
(2006)
J Cell Biol
, vol.174
, Issue.3
, pp. 379-390
-
-
Claypool, S.M.1
McCaffery, J.M.2
Koehler, C.M.3
-
45
-
-
34548461710
-
Rapid T cell receptor-mediated SHP-1 S591 phosphorylation regulates SHP-1 cellular localization and phosphatase activity
-
2084461 17575265 10.1189/jlb.1206736
-
Liu Y Kruhlak MJ Hao JJ Shaw S Rapid T cell receptor-mediated SHP-1 S591 phosphorylation regulates SHP-1 cellular localization and phosphatase activity J Leukoc Biol 2007, 82(3):742-751. 2084461 17575265 10.1189/ jlb.1206736
-
(2007)
J Leukoc Biol
, vol.82
, Issue.3
, pp. 742-751
-
-
Liu, Y.1
Kruhlak, M.J.2
Hao, J.J.3
Shaw, S.4
-
46
-
-
0037238501
-
An alternate translation initiation site circumvents an amino-terminal DAX1 nonsense mutation leading to a mild form of X-linked adrenal hypoplasia congenita
-
10.1210/jc.2002-021034 12519885
-
Ozisik G Mantovani G Achermann JC Persani L Spada A Weiss J Beck-Peccoz P Jameson JL An alternate translation initiation site circumvents an amino-terminal DAX1 nonsense mutation leading to a mild form of X-linked adrenal hypoplasia congenita J Clin Endocrinol Metab 2003, 88(1):417-423. 10.1210/jc.2002-021034 12519885
-
(2003)
J Clin Endocrinol Metab
, vol.88
, Issue.1
, pp. 417-423
-
-
Ozisik, G.1
Mantovani, G.2
Achermann, J.C.3
Persani, L.4
Spada, A.5
Weiss, J.6
Beck-Peccoz, P.7
Jameson, J.L.8
-
47
-
-
0035985480
-
Characterisation, mutation detection, and association analysis of alternative promoters and 5′ UTRs of the human dopamine D3 receptor gene in schizophrenia
-
10.1038/sj.mp.4001003 12082567
-
Anney RJ Rees MI Bryan E Spurlock G Williams N Norton N Williams H Cardno A Zammit S Jones S et al Characterisation, mutation detection, and association analysis of alternative promoters and 5′ UTRs of the human dopamine D3 receptor gene in schizophrenia Mol Psychiatry 2002, 7(5):493-502. 10.1038/sj.mp.4001003 12082567
-
(2002)
Mol Psychiatry
, vol.7
, Issue.5
, pp. 493-502
-
-
Anney, R.J.1
Rees, M.I.2
Bryan, E.3
Spurlock, G.4
Williams, N.5
Norton, N.6
Williams, H.7
Cardno, A.8
Zammit, S.9
Jones, S.10
-
48
-
-
0037903275
-
Human Gene Mutation Database (HGMD): 2003 update
-
10.1002/humu.10212 12754702
-
Stenson PD Ball EV Mort M Phillips AD Shiel JA Thomas NS Abeysinghe S Krawczak M Cooper DN Human Gene Mutation Database (HGMD): 2003 update Hum Mutat 2003, 21(6):577-581. 10.1002/humu.10212 12754702
-
(2003)
Hum Mutat
, vol.21
, Issue.6
, pp. 577-581
-
-
Stenson, P.D.1
Ball, E.V.2
Mort, M.3
Phillips, A.D.4
Shiel, J.A.5
Thomas, N.S.6
Abeysinghe, S.7
Krawczak, M.8
Cooper, D.N.9
-
49
-
-
34248531753
-
Locating proteins in the cell using TargetP, SignalP and related tools
-
10.1038/nprot.2007.131 17446895
-
Emanuelsson O Brunak S von Heijne G Nielsen H Locating proteins in the cell using TargetP, SignalP and related tools Nat Protoc 2007, 2(4):953-971. 10.1038/nprot.2007.131 17446895
-
(2007)
Nat Protoc
, vol.2
, Issue.4
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
von Heijne, G.3
Nielsen, H.4
-
50
-
-
33746218840
-
Prediction of protein subcellular localization
-
10.1002/prot.21018 16752418
-
Yu CS Chen YC Lu CH Hwang JK Prediction of protein subcellular localization Proteins 2006, 64(3):643-651. 10.1002/prot.21018 16752418
-
(2006)
Proteins
, vol.64
, Issue.3
, pp. 643-651
-
-
Yu, C.S.1
Chen, Y.C.2
Lu, C.H.3
Hwang, J.K.4
-
51
-
-
0036891705
-
Sequence conserved for subcellular localization
-
2373743 12441382 10.1110/ps.0207402
-
Nair R Rost B Sequence conserved for subcellular localization Protein Sci 2002, 11(12):2836-2847. 2373743 12441382 10.1110/ps.0207402
-
(2002)
Protein Sci
, vol.11
, Issue.12
, pp. 2836-2847
-
-
Nair, R.1
Rost, B.2
-
52
-
-
0034697980
-
Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
-
10.1006/jmbi.2000.3903 10891285
-
Emanuelsson O Nielsen H Brunak S von Heijne G Predicting subcellular localization of proteins based on their N-terminal amino acid sequence J Mol Biol 2000, 300(4):1005-1016. 10.1006/jmbi.2000.3903 10891285
-
(2000)
J Mol Biol
, vol.300
, Issue.4
, pp. 1005-1016
-
-
Emanuelsson, O.1
Nielsen, H.2
Brunak, S.3
von Heijne, G.4
-
53
-
-
3042521098
-
Improved prediction of signal peptides: SignalP 3.0
-
10.1016/j.jmb.2004.05.028 15223320
-
Bendtsen JD Nielsen H von Heijne G Brunak S Improved prediction of signal peptides: SignalP 3.0 J Mol Biol 2004, 340(4):783-795. 10.1016/ j.jmb.2004.05.028 15223320
-
(2004)
J Mol Biol
, vol.340
, Issue.4
, pp. 783-795
-
-
Bendtsen, J.D.1
Nielsen, H.2
von Heijne, G.3
Brunak, S.4
-
54
-
-
0031614678
-
A hidden Markov model for predicting transmembrane helices in protein sequences
-
AAAI Press Glasgow J, Lathrop R, Littlejohn T, Major F, Peitsch M, Sankoff D, Sensen C
-
Sonnhammer EL von Heijne G Krogh A A hidden Markov model for predicting transmembrane helices in protein sequences Proc Sixth Int Conf on Intelligent Systems for Molecular Biology AAAI Press Glasgow J, Lathrop R, Littlejohn T, Major F, Peitsch M, Sankoff D, Sensen C 1998, 6:175-82.
-
(1998)
Proc Sixth Int Conf on Intelligent Systems for Molecular Biology
, vol.6
, pp. 175-182
-
-
Sonnhammer, E.L.1
von Heijne, G.2
Krogh, A.3
-
55
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
10.1006/jmbi.2000.4315 11152613
-
Krogh A Larsson B von Heijne G Sonnhammer EL Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes J Mol Biol 2001, 305(3):567-580. 10.1006/jmbi.2000.4315 11152613
-
(2001)
J Mol Biol
, vol.305
, Issue.3
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
von Heijne, G.3
Sonnhammer, E.L.4
-
56
-
-
0032409445
-
Sequence properties of GPI-anchored proteins near the omega-site: Constraints for the polypeptide binding site of the putative transamidase
-
10.1093/protein/11.12.1155 9930665
-
Eisenhaber B Bork P Eisenhaber F Sequence properties of GPI-anchored proteins near the omega-site: Constraints for the polypeptide binding site of the putative transamidase Protein Eng 1998, 11(12):1155-1161. 10.1093/protein/11.12.1155 9930665
-
(1998)
Protein Eng
, vol.11
, Issue.12
, pp. 1155-1161
-
-
Eisenhaber, B.1
Bork, P.2
Eisenhaber, F.3
-
57
-
-
0033028454
-
PSIC: Profile extraction from sequence alignments with position-specific counts of independent observations
-
10.1093/protein/12.5.387 10360979
-
Sunyaev SR Eisenhaber F Rodchenkov IV Eisenhaber B Tumanyan VG Kuznetsov EN PSIC: Profile extraction from sequence alignments with position-specific counts of independent observations Protein Eng 1999, 12(5):387-394. 10.1093/protein/12.5.387 10360979
-
(1999)
Protein Eng
, vol.12
, Issue.5
, pp. 387-394
-
-
Sunyaev, S.R.1
Eisenhaber, F.2
Rodchenkov, I.V.3
Eisenhaber, B.4
Tumanyan, V.G.5
Kuznetsov, E.N.6
-
58
-
-
0033600935
-
Prediction of potential GPI-modification sites in proprotein sequences
-
10.1006/jmbi.1999.3069 10497036
-
Eisenhaber B Bork P Eisenhaber F Prediction of potential GPI-modification sites in proprotein sequences J Mol Biol 1999, 292(3):741-758. 10.1006/jmbi.1999.3069 10497036
-
(1999)
J Mol Biol
, vol.292
, Issue.3
, pp. 741-758
-
-
Eisenhaber, B.1
Bork, P.2
Eisenhaber, F.3
-
59
-
-
0034234663
-
Automated annotation of GPI anchor sites: Case study C. elegans
-
10.1016/S0968-0004(00)01601-7 10871885
-
Eisenhaber B Bork P Yuan Y Löffler G Eisenhaber F Automated annotation of GPI anchor sites: Case study C. elegans Trends Biochem Sci 2000, 25(7):340-341. 10.1016/S0968-0004(00)01601-7 10871885
-
(2000)
Trends Biochem Sci
, vol.25
, Issue.7
, pp. 340-341
-
-
Eisenhaber, B.1
Bork, P.2
Yuan, Y.3
Löffler, G.4
Eisenhaber, F.5
-
60
-
-
0038122825
-
In silico prediction of the peroxisomal proteome in fungi, plants and animals
-
10.1016/S0022-2836(03)00553-9 12823981
-
Emanuelsson O Elofsson A von Heijne G Cristobal S In silico prediction of the peroxisomal proteome in fungi, plants and animals J Mol Biol 2003, 330(2):443-456. 10.1016/S0022-2836(03)00553-9 12823981
-
(2003)
J Mol Biol
, vol.330
, Issue.2
, pp. 443-456
-
-
Emanuelsson, O.1
Elofsson, A.2
von Heijne, G.3
Cristobal, S.4
-
61
-
-
0037414447
-
Motif refinement of the peroxisomal targeting signal 1 and evaluation of taxon-specific differences
-
10.1016/S0022-2836(03)00318-8 12706717
-
Neuberger G Maurer-Stroh S Eisenhaber B Hartig A Eisenhaber F Motif refinement of the peroxisomal targeting signal 1 and evaluation of taxon-specific differences J Mol Biol 2003, 328(3):567-579. 10.1016/ S0022-2836(03)00318-8 12706717
-
(2003)
J Mol Biol
, vol.328
, Issue.3
, pp. 567-579
-
-
Neuberger, G.1
Maurer-Stroh, S.2
Eisenhaber, B.3
Hartig, A.4
Eisenhaber, F.5
-
62
-
-
0037414458
-
Prediction of peroxisomal targeting signal 1 containing proteins from amino acid sequence
-
10.1016/S0022-2836(03)00319-X 12706718
-
Neuberger G Maurer-Stroh S Eisenhaber B Hartig A Eisenhaber F Prediction of peroxisomal targeting signal 1 containing proteins from amino acid sequence J Mol Biol 2003, 328(3):581-592. 10.1016/S0022-2836(03)00319-X 12706718
-
(2003)
J Mol Biol
, vol.328
, Issue.3
, pp. 581-592
-
-
Neuberger, G.1
Maurer-Stroh, S.2
Eisenhaber, B.3
Hartig, A.4
Eisenhaber, F.5
-
63
-
-
0036677718
-
Prediction of Golgi Type II membrane proteins based on their transmembrane domains
-
10.1093/bioinformatics/18.8.1109 12176834
-
Yuan Z Teasdale RD Prediction of Golgi Type II membrane proteins based on their transmembrane domains Bioinformatics 2002, 18(8):1109-1115. 10.1093/bioinformatics/18.8.1109 12176834
-
(2002)
Bioinformatics
, vol.18
, Issue.8
, pp. 1109-1115
-
-
Yuan, Z.1
Teasdale, R.D.2
-
64
-
-
2142657817
-
A combined transmembrane topology and signal peptide prediction method
-
10.1016/j.jmb.2004.03.016 15111065
-
Käll L Krogh A Sonnhammer EL A combined transmembrane topology and signal peptide prediction method J Mol Biol 2004, 338(5):1027-1036. 10.1016/j.jmb.2004.03.016 15111065
-
(2004)
J Mol Biol
, vol.338
, Issue.5
, pp. 1027-1036
-
-
Käll, L.1
Krogh, A.2
Sonnhammer, E.L.3
|