Prediction of Golgi type II membrane proteins based on their transmembrane domains

Bioinformatics

Volumn 18, Issue 8, 2002, Pages 1109-1115

  Yuan, Zheng ^a   Teasdale, Rohan D ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

MEMBRANE PROTEIN;

ARTICLE; CONTROLLED STUDY; CYTOLOGY; DISCRIMINANT ANALYSIS; GOLGI COMPLEX; HYDROPHOBICITY; METHODOLOGY; PREDICTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN LOCALIZATION;

EID: 0036677718     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/18.8.1109     Document Type: Article

References (29)

1. Adaptation of protein sufaces to subcellular location
2. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
3. How many membrane proteins are there?
4. Cholesterol and the Golgi apparatus
5. Relation between amino acid composition and cellular location of proteins
6. Prediction of membrane protein types and subcellular locations
7. Prediction of protein subcellular locations by incorporating quasi-sequence-order effect
8. YPD, PombePD and WormPD: Model organism volumes of the BioKnowledge library, an integrated resource for protein information
9. TM Finder: A prediction program for transmembrane protein segments using a combination of hydrophobicity and nonpolar phase helicity scales
10. Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
11. Analysis of membrane and surface protein sequences with the hydrophobic moment plot
12. Targeting of proteins to the Golgi apparatus
13. Selection of representative protein data sets
14. Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
15. A simple method for displaying the hydropathic character of a protein
16. Cell cycle maintenance and biogenesis of the Golgi complex
17. Comparison of the predicted and observed secondary structure of T4 phage lysozyme
18. A comparison of signal sequence prediction methods using a test set of signal peptides
19. An investigation of the role of transmembrane domains in Golgi protein retention
20. A comparison of the transmembrane domains of Golgi and plasma membrane proteins
21. PSORT: A program for detecting sorting signals in proteins and predicting their subcellular localization
22. Discrimination of intracellular and extracellular proteins using amino acid composition and residue-pair frequencies
23. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
24. Exclusion of golgi residents from transport vesicles budding from Golgi cisternae in intact cells
25. Using neural networks for prediction of the subcellular location of proteins
26. Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule
27. Prediction of protein subcellular locations using Markov chain models