메뉴 건너뛰기




Volumn 328, Issue 3, 2003, Pages 581-592

Prediction of peroxisomal targeting signal 1 containing proteins from amino acid sequence

Author keywords

Gene function prediction; Peroxisome; Protein sequence motif; PTS1; Subcellular localisation

Indexed keywords

DIHYDROFOLATE REDUCTASE; MATRIX PROTEIN; MUTANT PROTEIN; RECEPTOR PROTEIN;

EID: 0037414458     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0022-2836(03)00319-X     Document Type: Article
Times cited : (171)

References (40)
  • 1
    • 0023548002 scopus 로고
    • Identification of a peroxisomal targeting signal at the carboxy terminus of firefly luciferase
    • Gould S.G., Keller G.A., Subramani S. Identification of a peroxisomal targeting signal at the carboxy terminus of firefly luciferase. J. Cell Biol. 105:1987;2923-2931.
    • (1987) J. Cell Biol. , vol.105 , pp. 2923-2931
    • Gould, S.G.1    Keller, G.A.2    Subramani, S.3
  • 2
    • 0026326482 scopus 로고
    • Amino-terminal presequence of the precursor of peroxisomal 3-ketoacyl-CoA thiolase is a cleavable signal peptide for peroxisomal targeting
    • Osumi T., Tsukamoto T., Hata S., Yokota S., Miura S., Fujiki Y., et al. Amino-terminal presequence of the precursor of peroxisomal 3-ketoacyl-CoA thiolase is a cleavable signal peptide for peroxisomal targeting. Biochem. Biophys. Res. Commun. 181:1991;947-954.
    • (1991) Biochem. Biophys. Res. Commun. , vol.181 , pp. 947-954
    • Osumi, T.1    Tsukamoto, T.2    Hata, S.3    Yokota, S.4    Miura, S.5    Fujiki, Y.6
  • 3
    • 0025941962 scopus 로고
    • A novel, cleavable peroxisomal targeting signal at the amino-terminus of the rat 3-ketoacyl-CoA thiolase
    • Swinkels B.W., Gould S.J., Bodnar A.G., Rachubinski R.A., Subramani S. A novel, cleavable peroxisomal targeting signal at the amino-terminus of the rat 3-ketoacyl-CoA thiolase. EMBO J. 10:1991;3255-3262.
    • (1991) EMBO J. , vol.10 , pp. 3255-3262
    • Swinkels, B.W.1    Gould, S.J.2    Bodnar, A.G.3    Rachubinski, R.A.4    Subramani, S.5
  • 4
    • 0027507025 scopus 로고
    • Two independent targeting signals in catalase A of it Saccharomyces cerevisiae
    • Kragler F., Langeder A., Raupachova J., Binder M., Hartig A. Two independent targeting signals in catalase A of it Saccharomyces cerevisiae. J. Cell Biol. 120:1993;665-673.
    • (1993) J. Cell Biol. , vol.120 , pp. 665-673
    • Kragler, F.1    Langeder, A.2    Raupachova, J.3    Binder, M.4    Hartig, A.5
  • 5
    • 0029058992 scopus 로고
    • Peroxisomal and mitochondrial carnitine acetyltransferases of Saccharomyces cerevisiae are encoded by a single gene
    • Elgersma Y., Van Roermund C.W., Wanders R.J., Tabak H.F. Peroxisomal and mitochondrial carnitine acetyltransferases of Saccharomyces cerevisiae are encoded by a single gene. EMBO J. 14:1995;3472-3479.
    • (1995) EMBO J. , vol.14 , pp. 3472-3479
    • Elgersma, Y.1    Van Roermund, C.W.2    Wanders, R.J.3    Tabak, H.F.4
  • 6
    • 0037067768 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae acyl-CoA oxidase follows a novel, non-PTS1, import pathway into peroxisomes that is dependent on Pex5p
    • Klein A.T., Van Den Berg M., Bottger G., Tabak H.F., Distel B. Saccharomyces cerevisiae acyl-CoA oxidase follows a novel, non-PTS1, import pathway into peroxisomes that is dependent on Pex5p. J. Biol. Chem. 277:2002;25011-25019.
    • (2002) J. Biol. Chem. , vol.277 , pp. 25011-25019
    • Klein, A.T.1    Van Den Berg, M.2    Bottger, G.3    Tabak, H.F.4    Distel, B.5
  • 7
    • 0029010680 scopus 로고
    • Import of stably folded proteins into peroxisomes
    • Walton P., Hill P., Subramani S. Import of stably folded proteins into peroxisomes. Mol. Biol. Cell. 6:1995;675-683.
    • (1995) Mol. Biol. Cell , vol.6 , pp. 675-683
    • Walton, P.1    Hill, P.2    Subramani, S.3
  • 8
    • 0027996438 scopus 로고
    • The tetratricopeptide repeat-domain of the PAS10 protein of it Saccharomyces cerevisiae is essential for binding the peroxisomal targeting signal-SKL
    • Brocard C., Kragler F., Simon M.M., Schuster T., Hartig A. The tetratricopeptide repeat-domain of the PAS10 protein of it Saccharomyces cerevisiae is essential for binding the peroxisomal targeting signal-SKL. Biochem. Biophys. Res. Commun. 204:1994;1016-1022.
    • (1994) Biochem. Biophys. Res. Commun. , vol.204 , pp. 1016-1022
    • Brocard, C.1    Kragler, F.2    Simon, M.M.3    Schuster, T.4    Hartig, A.5
  • 10
    • 0036273592 scopus 로고    scopus 로고
    • Opinion: Peroxisomal-protein import: Is it really that complex?
    • Gould S., Collins C. Opinion: peroxisomal-protein import: is it really that complex? Nature Rev. Mol. Cell. Biol. 3:2002;382-389.
    • (2002) Nature Rev. Mol. Cell. Biol. , vol.3 , pp. 382-389
    • Gould, S.1    Collins, C.2
  • 12
    • 0026769928 scopus 로고
    • Targeting efficiencies of various permutations of the consensus C-terminal tripeptide peroxisomal targeting signal
    • Swinkels B.W., Gould S.J., Subramani S. Targeting efficiencies of various permutations of the consensus C-terminal tripeptide peroxisomal targeting signal. FEBS Letters. 305:1992;133-136.
    • (1992) FEBS Letters , vol.305 , pp. 133-136
    • Swinkels, B.W.1    Gould, S.J.2    Subramani, S.3
  • 13
    • 0029144403 scopus 로고
    • Mammalian alanine/glyoxylate aminotransferase 1 is imported into peroxisomes via the PTS1 translocation pathway. increased degeneracy and context specificity of the mammalian PTS1 motif and implications for the peroxisome-to-mitochondrion mistargeting of AGT in primary hyperoxaluria type 1
    • Motley A., Lumb M.J., Oatey P.B., Jennings P.R., De Zoysa P.A., Wanders R.J., et al. Mammalian alanine/glyoxylate aminotransferase 1 is imported into peroxisomes via the PTS1 translocation pathway. increased degeneracy and context specificity of the mammalian PTS1 motif and implications for the peroxisome-to-mitochondrion mistargeting of AGT in primary hyperoxaluria type 1. J. Cell Biol. 131:1995;95-109.
    • (1995) J. Cell Biol. , vol.131 , pp. 95-109
    • Motley, A.1    Lumb, M.J.2    Oatey, P.B.3    Jennings, P.R.4    De Zoysa, P.A.5    Wanders, R.J.6
  • 14
    • 0026811672 scopus 로고
    • The carboxyl-terminal tripeptide serine-lysine-leucine of firefly luciferase is necessary but not sufficient for peroxisomal import in yeast
    • Distel B., Gould S.J., Voorn-Brouwer T., Van Der Berg M., Tabak H., Subramani S. The carboxyl-terminal tripeptide serine-lysine-leucine of firefly luciferase is necessary but not sufficient for peroxisomal import in yeast. New Biol. 4:1992;157-165.
    • (1992) New Biol. , vol.4 , pp. 157-165
    • Distel, B.1    Gould, S.J.2    Voorn-Brouwer, T.3    Van Der Berg, M.4    Tabak, H.5    Subramani, S.6
  • 16
    • 0031277483 scopus 로고    scopus 로고
    • Diverse amino acid residues function within the type 1 peroxisomal targeting signal. Implications for the role of accessory residues upstream of the type 1 peroxisomal targeting signal
    • Mullen R.T., Lee M.S., Flynn C.R., Trelease R.N. Diverse amino acid residues function within the type 1 peroxisomal targeting signal. Implications for the role of accessory residues upstream of the type 1 peroxisomal targeting signal. Plant Physiol. 115:1997;881-889.
    • (1997) Plant Physiol. , vol.115 , pp. 881-889
    • Mullen, R.T.1    Lee, M.S.2    Flynn, C.R.3    Trelease, R.N.4
  • 17
    • 0032509362 scopus 로고    scopus 로고
    • The difference in recognition of terminal tripeptides as peroxisomal targeting signal 1 between yeast and human is due to different affinities of their receptor Pex5p to the cognate signal and to residues adjacent to it
    • Lametschwandtner G., Brocard C., Fransen M., Van Veldhoven P., Berger J., Hartig A. The difference in recognition of terminal tripeptides as peroxisomal targeting signal 1 between yeast and human is due to different affinities of their receptor Pex5p to the cognate signal and to residues adjacent to it. J. Biol. Chem. 273:1998;33635-33643.
    • (1998) J. Biol. Chem. , vol.273 , pp. 33635-33643
    • Lametschwandtner, G.1    Brocard, C.2    Fransen, M.3    Van Veldhoven, P.4    Berger, J.5    Hartig, A.6
  • 18
    • 0037414447 scopus 로고    scopus 로고
    • Neuberger, G., Maurer-Stroh, S., Eisenhaber, B., Hartig, A. & Eisenhaber, F. (2003). Motif refinement of the peroxisomal targeting signal 1 and evaluation of taxon-specific differences. J. Mol. Biol. (this issue)
    • Neuberger, G., Maurer-Stroh, S., Eisenhaber, B., Hartig, A. & Eisenhaber, F. (2003). Motif refinement of the peroxisomal targeting signal 1 and evaluation of taxon-specific differences. J. Mol. Biol. (this issue).
  • 19
    • 0030795333 scopus 로고    scopus 로고
    • Cloning and subcellular localization of hamster and rat isopentenyl diphosphate dimethylallyl diphosphate isomerase. a PTS1 motif targets the enzyme to peroxisomes
    • Paton V.G., Shackelford J.E., Krisans S.K. Cloning and subcellular localization of hamster and rat isopentenyl diphosphate dimethylallyl diphosphate isomerase. a PTS1 motif targets the enzyme to peroxisomes. J. Biol. Chem. 272:1997;18945-18950.
    • (1997) J. Biol. Chem. , vol.272 , pp. 18945-18950
    • Paton, V.G.1    Shackelford, J.E.2    Krisans, S.K.3
  • 20
    • 0032972509 scopus 로고    scopus 로고
    • Psort: A program for detecting sorting signals in proteins and predicting their subcellular localization
    • Nakai K., Horton P. Psort: a program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem. Sci. 24:1999;34-36.
    • (1999) Trends Biochem. Sci. , vol.24 , pp. 34-36
    • Nakai, K.1    Horton, P.2
  • 22
    • 0034867911 scopus 로고    scopus 로고
    • Localization of cytosolic NADP-dependent isocitrate dehydrogenase in the peroxisomes of rat liver cells: Biochemical and immunocytochemical studies
    • Yoshihara T., Hamamoto T., Munakata R., Tajiri R., Ohsumi M., Yokota S. Localization of cytosolic NADP-dependent isocitrate dehydrogenase in the peroxisomes of rat liver cells: biochemical and immunocytochemical studies. J. Histochem. Cytochem. 49:2001;1123-1131.
    • (2001) J. Histochem. Cytochem. , vol.49 , pp. 1123-1131
    • Yoshihara, T.1    Hamamoto, T.2    Munakata, R.3    Tajiri, R.4    Ohsumi, M.5    Yokota, S.6
  • 23
    • 0029858734 scopus 로고    scopus 로고
    • Molecular basis of the variable mitochondrial and peroxisomal localisation of alanine-glyoxylate aminotransferase
    • Oatey P.B., Lumb M.J., Danpure C.J. Molecular basis of the variable mitochondrial and peroxisomal localisation of alanine-glyoxylate aminotransferase. Eur. J. Biochem. 241:1996;374-385.
    • (1996) Eur. J. Biochem. , vol.241 , pp. 374-385
    • Oatey, P.B.1    Lumb, M.J.2    Danpure, C.J.3
  • 24
    • 0034090281 scopus 로고    scopus 로고
    • Mitochondrial targeting signal-induced conformational change and repression of the peroxisomal targeting signal of the precursor for rat liver serine:pyruvate/alanine:glyoxylate aminotransferase
    • Oda T., Uchida C., Miura S. Mitochondrial targeting signal-induced conformational change and repression of the peroxisomal targeting signal of the precursor for rat liver serine:pyruvate/alanine:glyoxylate aminotransferase. J. Biochem. 127:2000;665-671.
    • (2000) J. Biochem. , vol.127 , pp. 665-671
    • Oda, T.1    Uchida, C.2    Miura, S.3
  • 25
    • 0033997957 scopus 로고    scopus 로고
    • Molecular adaptation of alanine:glyoxylate aminotransferase targeting in primates
    • Holbrook J.D., Birdsey G.M., Yang Z., Bruford M.W., Danpure C.J. Molecular adaptation of alanine:glyoxylate aminotransferase targeting in primates. Mol. Biol. Evol. 17:2000;387-400.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 387-400
    • Holbrook, J.D.1    Birdsey, G.M.2    Yang, Z.3    Bruford, M.W.4    Danpure, C.J.5
  • 27
    • 0023931977 scopus 로고
    • Crystal structure of human dihydrofolate reductase complexed with folate
    • Oefner C., D'Arcy A., Winkler F.K. Crystal structure of human dihydrofolate reductase complexed with folate. Eur. J. Biochem. 174:1988;377-385.
    • (1988) Eur. J. Biochem. , vol.174 , pp. 377-385
    • Oefner, C.1    D'Arcy, A.2    Winkler, F.K.3
  • 28
    • 0026724618 scopus 로고
    • Molecular evolution of alanine/glyoxylate aminotransferase 1 intracellular targeting. analysis of the marmoset and rabbit genes
    • Purdue P.E., Lumb M.J., Danpure C.J. Molecular evolution of alanine/glyoxylate aminotransferase 1 intracellular targeting. analysis of the marmoset and rabbit genes. Eur. J. Biochem. 207:1992;757-766.
    • (1992) Eur. J. Biochem. , vol.207 , pp. 757-766
    • Purdue, P.E.1    Lumb, M.J.2    Danpure, C.J.3
  • 29
    • 0026470816 scopus 로고
    • Cytoplasmic accumulation of a normally mitochondrial malonyl-CoA decarboxylase by the use of an alternate transcription start site
    • Courchesne-Smith C., Jang S.H., Shi Q., DeWille J., Sasaki G., Kolattukudy P.E. Cytoplasmic accumulation of a normally mitochondrial malonyl-CoA decarboxylase by the use of an alternate transcription start site. Arch. Biochem. Biophys. 298:1992;576-586.
    • (1992) Arch. Biochem. Biophys. , vol.298 , pp. 576-586
    • Courchesne-Smith, C.1    Jang, S.H.2    Shi, Q.3    DeWille, J.4    Sasaki, G.5    Kolattukudy, P.E.6
  • 30
    • 0033609919 scopus 로고    scopus 로고
    • MCD encodes peroxisomal and cytoplasmic forms of malonyl-CoA decarboxylase and is mutated in malonyl-CoA decarboxylase deficiency
    • Sacksteder K.A., Morrell J.C., Wanders R.J.A., Matalon R., Gould S.J. MCD encodes peroxisomal and cytoplasmic forms of malonyl-CoA decarboxylase and is mutated in malonyl-CoA decarboxylase deficiency. J. Biol. Chem. 274:1999;24461-24468.
    • (1999) J. Biol. Chem. , vol.274 , pp. 24461-24468
    • Sacksteder, K.A.1    Morrell, J.C.2    Wanders, R.J.A.3    Matalon, R.4    Gould, S.J.5
  • 31
    • 0034617219 scopus 로고    scopus 로고
    • In mouse α-methylacyl-CoA racemase, the same gene product is simultaneously located in mitochondria and peroxisomes
    • Kotti T.J., Savolainen K., Helander H.M., Yagi A., Novikov D.K., Kalkkinen N., et al. In mouse α-methylacyl-CoA racemase, the same gene product is simultaneously located in mitochondria and peroxisomes. J. Biol. Chem. 275:2000;20887-20895.
    • (2000) J. Biol. Chem. , vol.275 , pp. 20887-20895
    • Kotti, T.J.1    Savolainen, K.2    Helander, H.M.3    Yagi, A.4    Novikov, D.K.5    Kalkkinen, N.6
  • 33
    • 0033664345 scopus 로고    scopus 로고
    • Peroxisomal targeting signal-1 recognition by the TPR domains of human PEX5
    • Gatto G.J., Geisbrecht B.V., Gould S.J., Berg J. Peroxisomal targeting signal-1 recognition by the TPR domains of human PEX5. Nature Struct. Biol. 7:2000;1091-1095.
    • (2000) Nature Struct. Biol. , vol.7 , pp. 1091-1095
    • Gatto, G.J.1    Geisbrecht, B.V.2    Gould, S.J.3    Berg, J.4
  • 35
    • 0033600935 scopus 로고    scopus 로고
    • Prediction of potential GPI-modification sites in proprotein sequences
    • Eisenhaber B., Bork P., Eisenhaber F. Prediction of potential GPI-modification sites in proprotein sequences. J. Mol. Biol. 292:1999;741-758.
    • (1999) J. Mol. Biol. , vol.292 , pp. 741-758
    • Eisenhaber, B.1    Bork, P.2    Eisenhaber, F.3
  • 36
    • 0036290648 scopus 로고    scopus 로고
    • N-terminal N-myristoylation of proteins: Prediction of substrate proteins from amino acid sequence
    • Maurer-Stroh S., Eisenhaber B., Eisenhaber F. N-terminal N-myristoylation of proteins: prediction of substrate proteins from amino acid sequence. J. Mol. Biol. 317:2002;541-557.
    • (2002) J. Mol. Biol. , vol.317 , pp. 541-557
    • Maurer-Stroh, S.1    Eisenhaber, B.2    Eisenhaber, F.3
  • 39
    • 0035049164 scopus 로고    scopus 로고
    • Post-translational GPI lipid anchor modification of proteins in kingdoms of life: Analysis of protein sequence data from complete genomes
    • Eisenhaber B., Bork P., Eisenhaber F. Post-translational GPI lipid anchor modification of proteins in kingdoms of life: analysis of protein sequence data from complete genomes. Protein Eng. 14:2001;17-25.
    • (2001) Protein Eng. , vol.14 , pp. 17-25
    • Eisenhaber, B.1    Bork, P.2    Eisenhaber, F.3
  • 40
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modelling
    • Guex N., Peitsch M.C. SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modelling. Electrophoresis. 18:1997;2714-2723.
    • (1997) Electrophoresis , vol.18 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.