메뉴 건너뛰기




Volumn 19, Issue 4, 2009, Pages 581-589

HapMap methylation-associated SNPs, markers of germline DNA methylation, positively correlate with regional levels of human meiotic recombination

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; DINUCLEOTIDE; DNA;

EID: 63849094762     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.086181.108     Document Type: Article
Times cited : (53)

References (54)
  • 1
    • 0033539168 scopus 로고    scopus 로고
    • CpG islands as genomic footprints of promoters that are associated with replication origins
    • Antequera, F. and Bird, A. 1999. CpG islands as genomic footprints of promoters that are associated with replication origins. Curr. Biol. 9: R661-R667.
    • (1999) Curr. Biol , vol.9
    • Antequera, F.1    Bird, A.2
  • 2
    • 0038365277 scopus 로고    scopus 로고
    • CpG methylation of human papillomavirus type 16 DNA in cervical cancer cell lines and in clinical specimens: Genomic hypomethylation correlates with carcinogenic progression
    • Badal, V., Chuang, L.S., Tan, E.H., Badal, S., Villa, L.L., Wheeler, C.M., Li, B.F., and Bernard, H.U. 2003. CpG methylation of human papillomavirus type 16 DNA in cervical cancer cell lines and in clinical specimens: Genomic hypomethylation correlates with carcinogenic progression. J. Virol. 77: 6227-6234.
    • (2003) J. Virol , vol.77 , pp. 6227-6234
    • Badal, V.1    Chuang, L.S.2    Tan, E.H.3    Badal, S.4    Villa, L.L.5    Wheeler, C.M.6    Li, B.F.7    Bernard, H.U.8
  • 3
    • 0019322245 scopus 로고
    • DNA methylation and the frequency of CpG in animal DNA
    • Bird, A.P. 1980. DNA methylation and the frequency of CpG in animal DNA. Nucleic Acids Res. 8: 1499-1504.
    • (1980) Nucleic Acids Res , vol.8 , pp. 1499-1504
    • Bird, A.P.1
  • 4
    • 0022540321 scopus 로고
    • CpG-rich islands and the function of DNA methylation
    • Bird, A.P. 1986. CpG-rich islands and the function of DNA methylation. Nature 321: 209-213.
    • (1986) Nature , vol.321 , pp. 209-213
    • Bird, A.P.1
  • 5
    • 3242663659 scopus 로고    scopus 로고
    • An integrated epigenetic and genetic approach to common human disease
    • Bjornsson, H.T., Fallin, M.D., and Feinberg, A.P. 2004. An integrated epigenetic and genetic approach to common human disease. Trends Genet. 20: 350-358.
    • (2004) Trends Genet , vol.20 , pp. 350-358
    • Bjornsson, H.T.1    Fallin, M.D.2    Feinberg, A.P.3
  • 6
    • 33644873001 scopus 로고    scopus 로고
    • Transposon-derived repeats in the human genome and 5-methylcytosine-associated mutations in adjacent genes
    • Bjornsson, H.T., Ellingsen, L.M., andJonsson, J.J. 2006. Transposon-derived repeats in the human genome and 5-methylcytosine-associated mutations in adjacent genes. Gene 370: 43-50.
    • (2006) Gene , vol.370 , pp. 43-50
    • Bjornsson, H.T.1    Ellingsen, L.M.2    andJonsson, J.J.3
  • 8
    • 4544223707 scopus 로고    scopus 로고
    • Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L
    • Bourc'his, D. and Bestor, T.H. 2004. Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L. Nature 431: 96-99.
    • (2004) Nature , vol.431 , pp. 96-99
    • Bourc'his, D.1    Bestor, T.H.2
  • 9
    • 0032231877 scopus 로고    scopus 로고
    • Comprehensive human genetic maps: Individual and sex-specific variation in recombination
    • Broman, K.W., Murray, J.C., Sheffield, V.C., White, R.L., and Weber, J.L. 1998. Comprehensive human genetic maps: Individual and sex-specific variation in recombination. Am. J. Hum. Genet. 63: 861-869.
    • (1998) Am. J. Hum. Genet , vol.63 , pp. 861-869
    • Broman, K.W.1    Murray, J.C.2    Sheffield, V.C.3    White, R.L.4    Weber, J.L.5
  • 10
    • 39449116116 scopus 로고    scopus 로고
    • High- resolution mapping of crossovers reveals extensive variation in fine- scale recombination patterns among humans
    • Coop, G., Wen, X., Ober, C., Pritchard, J.K., and Przeworski, M. 2008. High- resolution mapping of crossovers reveals extensive variation in fine- scale recombination patterns among humans. Science 319: 1395-1398.
    • (2008) Science , vol.319 , pp. 1395-1398
    • Coop, G.1    Wen, X.2    Ober, C.3    Pritchard, J.K.4    Przeworski, M.5
  • 11
    • 0023853921 scopus 로고
    • The CpG dinucleotide and human genetic disease
    • Cooper, D.N. and Youssoufian, H. 1988. The CpG dinucleotide and human genetic disease. Hum. Genet. 78: 151-155.
    • (1988) Hum. Genet , vol.78 , pp. 151-155
    • Cooper, D.N.1    Youssoufian, H.2
  • 12
    • 0018185292 scopus 로고
    • Molecular basis of base substitution hotspots in Escherichia coli
    • Coulondre, C., Miller, J.H., Farabaugh, P.J., and Gilbert, W. 1978. Molecular basis of base substitution hotspots in Escherichia coli. Nature 274: 775-780.
    • (1978) Nature , vol.274 , pp. 775-780
    • Coulondre, C.1    Miller, J.H.2    Farabaugh, P.J.3    Gilbert, W.4
  • 13
    • 0033562954 scopus 로고    scopus 로고
    • Acquisition of the H19 methylation imprint occurs differentially on the parental alleles during spermatogenesis
    • Davis, T.L., Trasler, J.M., Moss, S.B., Yang, G.J., and Bartolomei, M.S. 1999. Acquisition of the H19 methylation imprint occurs differentially on the parental alleles during spermatogenesis. Genomics 58: 18-28.
    • (1999) Genomics , vol.58 , pp. 18-28
    • Davis, T.L.1    Trasler, J.M.2    Moss, S.B.3    Yang, G.J.4    Bartolomei, M.S.5
  • 15
    • 7444260846 scopus 로고    scopus 로고
    • The ENCODE (ENCyclopedia Of DNA Elements) Project
    • The ENCODE Project Consortium
    • The ENCODE Project Consortium. 2004. The ENCODE (ENCyclopedia Of DNA Elements) Project. Science 306: 636-640.
    • (2004) Science , vol.306 , pp. 636-640
  • 16
    • 0020699979 scopus 로고
    • Hypomethylation distinguishes genes of some human cancers from their normal counterparts
    • Feinberg, A.P. and Vogelstein, B. 1983. Hypomethylation distinguishes genes of some human cancers from their normal counterparts. Nature 301: 89-92.
    • (1983) Nature , vol.301 , pp. 89-92
    • Feinberg, A.P.1    Vogelstein, B.2
  • 18
    • 0023216891 scopus 로고
    • CpG islands in vertebrate genomes
    • Gardiner-Garden, M. and Frommer, M. 1987. CpG islands in vertebrate genomes. J. Mol. Biol. 196: 261-282.
    • (1987) J. Mol. Biol , vol.196 , pp. 261-282
    • Gardiner-Garden, M.1    Frommer, M.2
  • 20
    • 33847304609 scopus 로고    scopus 로고
    • Gene body-specific methylation on the active X chromosome
    • Hellman, A. and Chess, A. 2007. Gene body-specific methylation on the active X chromosome. Science 315: 1141-1143.
    • (2007) Science , vol.315 , pp. 1141-1143
    • Hellman, A.1    Chess, A.2
  • 22
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • The International HapMap Consortium
    • The International HapMap Consortium. 2005. A haplotype map of the human genome. Nature 437: 1299-1320.
    • (2005) Nature , vol.437 , pp. 1299-1320
  • 23
    • 0034795550 scopus 로고    scopus 로고
    • Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex
    • Jeffreys, A.J., Kauppi, L., and Neumann, R. 2001. Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex. Nat. Genet. 29: 217-222.
    • (2001) Nat. Genet , vol.29 , pp. 217-222
    • Jeffreys, A.J.1    Kauppi, L.2    Neumann, R.3
  • 28
    • 0024356362 scopus 로고
    • The neutral theory of molecular evolution and the world view of the neutralists
    • Kimura, M. 1989. The neutral theory of molecular evolution and the world view of the neutralists. Genome 31: 24-31.
    • (1989) Genome , vol.31 , pp. 24-31
    • Kimura, M.1
  • 29
    • 0025912824 scopus 로고
    • Recent development of the neutral theory viewed from the Wrightian tradition of theoretical population genetics
    • Kimura, M. 1991. Recent development of the neutral theory viewed from the Wrightian tradition of theoretical population genetics. Proc. Natl. Acad. Sci. 88: 5969-5973.
    • (1991) Proc. Natl. Acad. Sci , vol.88 , pp. 5969-5973
    • Kimura, M.1
  • 31
    • 0032231701 scopus 로고    scopus 로고
    • Neighboring-nucleotide effects on the rates of germ-line single-base-pair substitution in human genes
    • Krawczak, M., Ball, E.V., and Cooper, D.N. 1998. Neighboring-nucleotide effects on the rates of germ-line single-base-pair substitution in human genes. Am. J. Hum. Genet. 63: 474-488.
    • (1998) Am. J. Hum. Genet , vol.63 , pp. 474-488
    • Krawczak, M.1    Ball, E.V.2    Cooper, D.N.3
  • 32
    • 0347622761 scopus 로고    scopus 로고
    • Imprinted chromosomal regions of the human genome have unusually high recombination rates
    • Lercher, M.J. and Hurst, L.D. 2003. Imprinted chromosomal regions of the human genome have unusually high recombination rates. Genetics 165:1629-1632.
    • (2003) Genetics , vol.165 , pp. 1629-1632
    • Lercher, M.J.1    Hurst, L.D.2
  • 34
    • 0019510628 scopus 로고
    • Reactivation of an inactive human X chromosome: Evidence for X inactivation by DNA methylation
    • Mohandas, T., Sparkes, R.S., and Shapiro, L.J. 1981. Reactivation of an inactive human X chromosome: Evidence for X inactivation by DNA methylation. Science 211: 393-396.
    • (1981) Science , vol.211 , pp. 393-396
    • Mohandas, T.1    Sparkes, R.S.2    Shapiro, L.J.3
  • 35
    • 26844482093 scopus 로고    scopus 로고
    • A fine-scale map of recombination rates and hotspots across the human genome
    • Myers, S., Bottolo, L., Freeman, C., McVean, G., and Donnelly, P. 2005. A fine-scale map of recombination rates and hotspots across the human genome. Science 310: 321-324.
    • (2005) Science , vol.310 , pp. 321-324
    • Myers, S.1    Bottolo, L.2    Freeman, C.3    McVean, G.4    Donnelly, P.5
  • 37
    • 33646130166 scopus 로고    scopus 로고
    • Polymorphism in the activity of human crossover hotspots independent of local DNA sequence variation
    • Neumann, R. and Jeffreys, A.J. 2006. Polymorphism in the activity of human crossover hotspots independent of local DNA sequence variation. Hum. Mol. Genet. 15: 1401-1411.
    • (2006) Hum. Mol. Genet , vol.15 , pp. 1401-1411
    • Neumann, R.1    Jeffreys, A.J.2
  • 38
    • 34347213437 scopus 로고    scopus 로고
    • Developmental acquisition of genome-wide DNA methylation occurs prior to meiosis in male germ cells
    • Oakes, C.C., La Salle, S., Smiraglia, D.J., Robaire, B., and Trasler, J.M. 2007. Developmental acquisition of genome-wide DNA methylation occurs prior to meiosis in male germ cells. Dev. Biol. 307: 368-379.
    • (2007) Dev. Biol , vol.307 , pp. 368-379
    • Oakes, C.C.1    La Salle, S.2    Smiraglia, D.J.3    Robaire, B.4    Trasler, J.M.5
  • 39
    • 50849104569 scopus 로고    scopus 로고
    • O'Hagan, H.M., Mohammad, H.P., and Baylin, S.B. 2008. Double-strand breaks can initiate gene silencing and SIRT1-dependent onset of DNA methylation in an exogenous promoter CpG island. PLoS Genet. 4: e1000155. doi: 10.1371/journal.pgen.1000155.
    • O'Hagan, H.M., Mohammad, H.P., and Baylin, S.B. 2008. Double-strand breaks can initiate gene silencing and SIRT1-dependent onset of DNA methylation in an exogenous promoter CpG island. PLoS Genet. 4: e1000155. doi: 10.1371/journal.pgen.1000155.
  • 40
    • 20044390368 scopus 로고    scopus 로고
    • DNA methylation profiling of the human major histocompatibility complex: A pilot study for the Human Epigenome Project
    • doi:10.1371/journal. pbio.0020405
    • Rakyan, V.K., Hildmann, T., Novik, K.L., Lewin, J., Tost, J., Cox, A.V., Andrews, T.D., Howe, K.L., Otto, T., Olek, A., et al. 2004. DNA methylation profiling of the human major histocompatibility complex: A pilot study for the Human Epigenome Project. PLoS Biol. 2: e405. doi:10.1371/journal. pbio.0020405.
    • (2004) PLoS Biol , vol.2
    • Rakyan, V.K.1    Hildmann, T.2    Novik, K.L.3    Lewin, J.4    Tost, J.5    Cox, A.V.6    Andrews, T.D.7    Howe, K.L.8    Otto, T.9    Olek, A.10
  • 41
    • 0034305821 scopus 로고    scopus 로고
    • DNA methylation in health and disease
    • Robertson, K.D. and Wolffe, A.P. 2000. DNA methylation in health and disease. Nat. Rev. Genet. 1: 11-19.
    • (2000) Nat. Rev. Genet , vol.1 , pp. 11-19
    • Robertson, K.D.1    Wolffe, A.P.2
  • 42
    • 33746626111 scopus 로고    scopus 로고
    • Human imprinted chromosomal regions are historical hot-spots of recombination
    • doi: 10.1371/journal.pgen.0020101
    • Sandovici, I., Kassovska-Bratinova, S., Vaughan, J.E., Stewart, R., Leppert, M., and Sapienza, C. 2006. Human imprinted chromosomal regions are historical hot-spots of recombination. PLoS Genet. 2: e101. doi: 10.1371/journal.pgen.0020101.
    • (2006) PLoS Genet , vol.2
    • Sandovici, I.1    Kassovska-Bratinova, S.2    Vaughan, J.E.3    Stewart, R.4    Leppert, M.5    Sapienza, C.6
  • 43
    • 27544435335 scopus 로고    scopus 로고
    • Sequence features in regions of weak and strong linkage disequilibrium
    • Smith, A.V., Thomas, D.J., Munro, H.M., and Abecasis, G.R. 2005. Sequence features in regions of weak and strong linkage disequilibrium. Genome Res. 15: 1519-1534.
    • (2005) Genome Res , vol.15 , pp. 1519-1534
    • Smith, A.V.1    Thomas, D.J.2    Munro, H.M.3    Abecasis, G.R.4
  • 44
    • 14744267496 scopus 로고    scopus 로고
    • Association of tissue-specific differentially methylated regions (TDMs) with differential gene expression
    • Song, F., Smith, J.F., Kimura, M.T., Morrow, A.D., Matsuyama, T., Nagase, H., and Held, W.A. 2005. Association of tissue-specific differentially methylated regions (TDMs) with differential gene expression. Proc. Natl. Acad. Sci. 102: 3336-3341.
    • (2005) Proc. Natl. Acad. Sci , vol.102 , pp. 3336-3341
    • Song, F.1    Smith, J.F.2    Kimura, M.T.3    Morrow, A.D.4    Matsuyama, T.5    Nagase, H.6    Held, W.A.7
  • 47
    • 33644981509 scopus 로고    scopus 로고
    • A map of recent positive selection in the human genome
    • doi:10.1371/journal.pbio.0040072
    • Voight, B.F., Kudaravalli, S., Wen, X., and Pritchard, J.K. 2006. A map of recent positive selection in the human genome. PLoS Biol. 4: e72. doi:10.1371/journal.pbio.0040072.
    • (2006) PLoS Biol , vol.4
    • Voight, B.F.1    Kudaravalli, S.2    Wen, X.3    Pritchard, J.K.4
  • 48
    • 48749119888 scopus 로고    scopus 로고
    • Sperm cross-over activity in regions of the human genome showing extreme breakdown of marker association
    • Webb, A.J., Berg, I.L., and Jeffreys, A. 2008. Sperm cross-over activity in regions of the human genome showing extreme breakdown of marker association. Proc. Natl. Acad. Sci. 105: 10471-10476.
    • (2008) Proc. Natl. Acad. Sci , vol.105 , pp. 10471-10476
    • Webb, A.J.1    Berg, I.L.2    Jeffreys, A.3
  • 49
    • 34047116826 scopus 로고    scopus 로고
    • Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
    • Weber, M., Hellmann, I., Stadler, M.B., Ramos, L., Paabo, S., Rebhan, M., and Schubeler, D. 2007. Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome. Nat. Genet. 39: 457-466.
    • (2007) Nat. Genet , vol.39 , pp. 457-466
    • Weber, M.1    Hellmann, I.2    Stadler, M.B.3    Ramos, L.4    Paabo, S.5    Rebhan, M.6    Schubeler, D.7
  • 53
    • 0030840954 scopus 로고    scopus 로고
    • Cytosine methylation and the ecology of intragenomic parasites
    • Yoder, J.A., Walsh, C.P., and Bestor, T.H. 1997. Cytosine methylation and the ecology of intragenomic parasites. Trends Genet. 13: 335-340.
    • (1997) Trends Genet , vol.13 , pp. 335-340
    • Yoder, J.A.1    Walsh, C.P.2    Bestor, T.H.3
  • 54
    • 32444436681 scopus 로고    scopus 로고
    • Sequence context analysis of 8.2 million single nucleotide polymorphisms in the human genome
    • Zhao, Z. and Zhang, F. 2006. Sequence context analysis of 8.2 million single nucleotide polymorphisms in the human genome. Gene 366: 316-324.
    • (2006) Gene , vol.366 , pp. 316-324
    • Zhao, Z.1    Zhang, F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.