Mnma and IscS are required for in vitro 2-thiouridine biosynthesis in Escherichia coli

Biochemistry

Volumn 42, Issue 4, 2003, Pages 1109-1117

  Kambampati, Ravi ^a   Lauhon, Charles T ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTICODON STRUCTURES;

BIOSYNTHESIS; GELS; GENES; PROTEINS; RNA;

ESCHERICHIA COLI;

ADENOSINE TRIPHOSPHATE; CYSTATHIONINE GAMMA LYASE; GLUTAMINE; GLUTAMINE TRANSFER RNA; GLYCINE; LYSINE; LYSINE TRANSFER RNA; NUCLEOSIDE; SULFUR 35; THIOURIDINE; TRANSFER RNA; TRYPSIN;

AMINO ACID SEQUENCE; ANTICODON; ARTICLE; BACTERIAL GENE; BIOSYNTHESIS; CHEMICAL MODIFICATION; DNA MODIFICATION; ESCHERICHIA COLI; GEL MOBILITY SHIFT ASSAY; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; IN VITRO STUDY; ISCS GENE; MNMA GENE; MOLECULAR CLONING; MOLECULAR RECOGNITION; NONHUMAN; PRIORITY JOURNAL; PROTEIN PURIFICATION;

AMINOPEPTIDASES; ANTICODON; BINDING SITES; CARBON-SULFUR LYASES; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; KINETICS; PLASMIDS; RNA, TRANSFER, AMINO ACYL; RNA-BINDING PROTEINS; SUBSTRATE SPECIFICITY; SULFIDES; SULFUR; THIOURIDINE;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; NEGIBACTERIA;

EID: 0037417771     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi026536+     Document Type: Article

References (47)

1. Bjork G. R. (1995) in tRNA: Structure, Biosynthesis, and Function (Soil, D., and RajBhandary, U. L., Eds.) ASM Press, Washington, DC.
2. Yokoyama, S., Yamaizumi, Z., Nishimura, S., and Miyazawa, T. (1979) Nucleic Acids Res. 6, 2611-2627.
3. Kumar, R. K., and Davis, D. R. (1997) Nucleic Acids Res. 25, 1272-1280.
4. Yokoyama, S., Watanabe, T., Murao, K., Ishikura, H., Yamaizumi, Z., Nishimura, S., and Miyazawa, T. (1985) Proc. Natl. Acad. Sci. U.S.A. 82, 4905-4909.
5. Agris, P., Soil, D., and Seno, T. (1973) Biochemistry 12, 4331-4337.
6. Sylvers, L. A., Rogers, K. C., Shimizu, M., Ohtsuka, E., and Soll, D. (1993) Biochemistry 32, 3836-3841.
7. Madore, E., Florentz, C., Giege, R., Sekine, S., Yokoyama, S., and Lapointe, J. (1999) Eur. J. Biochem. 266, 1128-1135.
8. Kruger, M. K., and Sorensen, M. A. (1998) J. Mol. Biol. 284, 609-620.
9. Kruger, M. K., Pedersen, S., Hagervall, T. G., and Sorensen, M. A. (1998) J. Mol. Biol. 284, 621-631.
10. Urbonavicius, J., Qian, Q., Durand, J. M., Hagervall, T. G., and Bjork, G. R. (2001) EMBO. J. 20, 4863-4873.
11. Ashraf, S. S., Sochacka, E., Cain, R., Guenther, R., Malkiewicz, A., and Agris, P. F. (1999) RNA 5, 188-194.
12. Isel, C., Westhof, E., Massire, C., Le Grice, S. F. J., Ehresmann, B., Ehresmann, C., and Marquet, R. (1999) EMBO J. 18, 1038-1048.
13. Zhang, Z., Kang, S., Li, Y., and Morrow, C. (1998) RNA 4, 394-406.
14. Yasukawa, T., Suzuki, T., Ishii, N., Ueda, T., Ohta, S., and Watanabe, K. (2000) FEBS Lett. 467, 175-178.
15. Boulet, L., Karpati, G., and Shoubridge, E. A. (1992) Am. J. Hum. Genet. 51, 1187-1200.
16. Yasukawa, T., Suzuki, T., ishii, N., Ohta, S., and Watanabe, K. (2001) EMBO J. 20, 4794-4802.
17. Von Ahsen, U., Green, R., Schroeder, R., and Noller, H. F. (1997) RNA 3, 49-56.
18. Sullivan, M. A., Cannon, J. F., Webb, F. H., and Bock, R. M. (1985) J. Bacteriol. 161, 368-376.
19. Crescenzo, A. T. (1997) Identification and molecular genetic characterization of TrmU, a gene essential for 2-thiouridine modification of tRNA in Escherichia coli. Ph.D. dissertation presented to Yale University.
20. Leung, H.-C. E., Hagervall, T. G., Bjork, G. R., and Winkler, M. E. (1998) Genetic locations and database accession numbers of RNA-modifying and -editing enzymes. In Modification and Editing of RNA (Grosjean, H., and Benne, R., Eds.) pp 561-567, ASM Press, Washington, DC.
21. Elseviers, D., Petrullo, L. A., and Gallaagher, P. J. (1984) Nucleic Acids Res. 12, 3521-3534.
22. Bregeon, D., Colot, V., Radman, M., and Taddei, F. (2001) Genes Dev. 15, 2295-2306.
23. Hagervall, T. G., Edmonds, C. G., McCloskey, J. A., and Bjork, G. R. (1987) J. Biol. Chem. 262, 8488-8495.
24. Taya, Y., and Nishimura, S. (1973) Biochem. Biophys. Res. Commun. 51, 1062-1068.
25. Kambampati, R., and Lauhon, C. T. (1999) Biochemistry 38, 16561-16568.
26. Link, A. J., Phillips, D., and Church, G. M. (1997) J. Bacteriol. 179, 6228-6237.
27. Lauhon, C. T., and Kambampati, R. (2000) J. Biol. Chem. 275, 20096-20103.
28. Milligan, J. F., Groebe, D. R., Witherell, G. W., and Uhlenbeck, O. C. (1987) Nucleic Acids Res. 15, 8783-8798.
29. Peterson, E. T., and Uhlenbeck, O. C. (1992) Biochemistry. 31, 10380-10389.
30. Abrahams, J. P., Kraal, B., and Bosch, L. (1988) Nucleic Acids Res. 16, 10099-10108.
31. Harris, C. L., and Kolanko, C. J. (1989) Anal. Biochem. 176, 57-62.
32. Soderberg, T., and Poulter, C. D. (2000) Biochemistry 39, 6546-6553.
33. Gehrke, C. W., Kuo, K. C., McCune, R. A., and Gerhardt, K. O. (1982) J. Chromatography 230, 297-308.
34. Wu, H., Nada, S., and Dignam, J. D. (1995) Biochemistry 34, 16327-16336.
35. Mueller, E. G., and Palenchar P. M. (1999) Protein Sci. 8, 2424-2427.
36. Mihara, H., Kurihara, T., Yoshimura, T., and Esaki, N. (2000) J. Biochem. (Tokyo) 127, 559-567.
37. Kambampati, R., and Lauhon, C. T. (2000) J. Biol. Chem. 275, 10727-10730.
38. Mueller, E. G., Palenchar, P. M., and Buck, C. J. (2001) J. Biol. Chem. 276, 33588-33595.
39. Xi, J., Ge Y., Kinsland, C., McLafferty, F. W., Begley, T. P. (2001) Proc. Natl. Acad. Sci. U.S.A. 98, 8513-8518.
40. Sundaram, M., Durant, P. C., and Davis, D. R. (2000) Biochemistry 39, 12575-12584.
41. Palenchar, P. M., Buck, C. J., Cheng, H., Larson, T. J., and Mueller, E. G. (2000) J. Biol. Chem. 275, 8283-8286.
42. Goehler, B., and Doi, R. H. (1968) J. Bacteriol. 95, 793-800.
43. Ray, W. K., Zeng, G., Potters, M. B., Mansuri, A. M., Larson, T. J. (2000) J Bacteriol. 182, 2277-2284.
44. Lauhon, C. T. (2002) J. Bacteriol. 184, 6820-6829.
45. Mihara, H., Kato, S., Lacourciere, G. M., Stadtman, T. C., Kennedy, R. A., Kurihara, T. (2002) Proc. Nat. Acad. Sci. U.S.A. 99, 6679-6683.
46. Nilsson, K., Lundgren, H., Hagervall, T., Bjork, G. (2002) J. Bacteriol. 184, 6830-6835.
47. Urbina, H. D., Silberg, J. J., Hoff, K. G., and Vickery, L. E. (2001) J. Biol. Chem. 276, 44521-44526.