Single atom modification (O → S) of tRNA confers ribosome binding

RNA

Volumn 5, Issue 2, 1999, Pages 188-194

  Salman Ashraf, S ^a   Sochacka, Elzbieta ^b   Cain, Robert ^a   Guenther, Richard ^a   Malkiewicz, Andrzej ^b   Agris, Paul F ^a  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

^b LODZ UNIVERSITY OF TECHNOLOGY   (Poland)

Author keywords

2 thiouridine; Anticodon conformation; Anticodon stem loop analogs; Nucleoside modifications; Ribosome; Translation; tRNA(Lys)

Indexed keywords

LYSINE TRANSFER RNA; THIOURIDINE;

ANTICODON; ARTICLE; CHEMICAL MODIFICATION; CONTROLLED STUDY; ESCHERICHIA COLI; HUMAN; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; RIBOSOME; RNA BINDING; RNA CONFORMATION; RNA TRANSLATION; THERMOSTABILITY; ULTRAVIOLET SPECTROSCOPY;

ALDEHYDES; ANTICODON; ESCHERICHIA COLI; HUMANS; MAGNETIC RESONANCE SPECTROSCOPY; NUCLEIC ACID CONFORMATION; NUCLEIC ACID DENATURATION; NUCLEIC ACID HYBRIDIZATION; RIBOSOMES; RNA, FUNGAL; RNA, TRANSFER, LYS; SPECTRUM ANALYSIS; TEMPERATURE; THIOURIDINE;

ESCHERICHIA COLI;

EID: 0344026255     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S1355838299981529     Document Type: Article

References (29)

1. SUU anticodon explains tRNA's role in bacterial and mammalian ribosomal frameshifting and primer selection by HIV-1. RNA 3:420-428.
2. Agris PF, Malkiewicz A, Kraszewski A, Everett K, Nawrot B, Sochacka E, Jankowska J, Guenther R. 1995. Site-selected introduction of modified purine and pyrimidine ribonucleosides into RNA by automated phosphoramidite chemistry. Biochimie 77:125-134.
3. Agris PF, Sierzputowska-Gracz H, Smith W, Malkiewicz A, Sochacka E, Nawrot B. 1992. Thiolation of uridine carbon-2 restricts the motional dynamics of the transfer RNA wobble position nucleoside. J Am Chem Soc 114:2652-2656.
4. Agris PF, Söll D, Seno T. 1973. Biological function of 2-thiouridine in Escherichia coli glutamic acid transfer ribonucleic acid. Biochemistry 12:4331-4337.
5. Björk GR. 1995. Biosynthesis and function of modified nucleosides. In: Söll D, RajBhandary UL, eds. tRNA: Structure, biosynthesis, and function. Washington, DC: American Society for Microbiology, pp 165-205.
6. Lys transcript: Anticodon recognition and conformational changes upon binding of a lysyl-adenylate analogue. EMBO J 15:6321-6334.
7. Dao V, Guenther R, Malkiewicz A, Nawrot B, Sochacka E, Kraszewski A, Jankowska J, Everett K, Agris PF. 1994. Ribosome binding of DNA analogs of tRNA requires base modifications and supports the "extended anticodon." Proc Natl Acad Sci USA 91:2125-2129.
8. Ericson G, Minchew P, Wollenzien P. 1995. Structural changes in base-paired region 28 in 16 S rRNA close to the decoding region of the 30S ribosomal subunit are correlated to changes in tRNA binding. J Mol Biol 250:407-419.
9. Faulstich K, Worner K, Brill H, Engels JW. 1997. A sequencing method for RNA oligonucleotides based on mass spectrometry. Anal Chem 69:4349-4353.
10. Gehrke CW, Kuo KCT. 1990. Ribonucleoside analysis by reverse-phase high performance liquid chromatography. In: Gehrke CW, Kuo KCT, eds. Chromatography and modification of nucleoside, Vol. 45A. Amsterdam: Elsevier. pp A3-A71.
11. Grossenbacher AM, Stadelmann B, Heyer WD, Thuriaux P, Kohli J, Smith C, Agris PF, Kuo KC, Gehrke C. 1986. Antisuppressor mutations and sulfur-carrying nucleosides in transfer RNAs of Schizosaccharomyces pombe. J Biol Chem 261:16351-16355.
12. Harrington KM, Nazarenko IA, Dix DB, Thompson RC, Uhlenbeck OC. 1993. In vitro analysis of translational rate and accuracy with an unmodified tRNA. Biochemistry 32:7617-7622.
13. Lys. EMBO J 15:2826-2833.
14. Heyer WD, Thuriaux P, Kohli J, Ebert P, Kersten H, Gehrke C, Kuo KC, Agris PF. 1984. An antisuppressor mutation of Schizosaccharomyces pombe affects the post-transcriptional modification of the "wobble" base in the anticodon of tRNAs. J Biol Chem 259:2856-2862.
15. Phe. J Biomol Struct Dyn 5:1259-1266.
16. Igloi GL. 1988. Interaction of tRNAs and of phosphorothioate-substituted nucleic acids with an organomercurial. Probing the chemical environment of thiolated residues by affinity electrophoresis. Biochemistry 27:3842-3849.
17. Jacks T, Madhani HD, Masiarz FR, Varmus HE. 1988. Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region. Cell 55:447-458.
18. Kumar RK, Davis DR. 1997. Synthesis and studies on the effect of 2-thiouridine and 4-thiouridine on sugar conformation and RNA duplex stability. Nucleic Acids Res 25:1272-1280.
19. Moazed D, Noller HF. 1990. Binding of tRNA to the ribosomal A and P sites protects two distinct sets of nucleotides in 16 S rRNA. J Mol Biol 211:135-145.
20. Muramatsu T, Nishikawa K, Nemoto F, Kuchino Y, Nishimura S, Miyazawa T, Yokoyama S. 1988. Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification. Nature 336:179-181.
21. Rance M, Sorensen OW, Bodenhausen G, Wagner G, Ernst RR, Wüthrich K. 1983. Improved spectral resolution in cosy 1H NMR spectra of proteins via double quantum filtering. Biochem Biophys Res Commun 117:479-485.
22. Rould MA, Perona JJ, Steitz TA. 1991. Structural basis of anticodon loop recognition by glutaminyl-tRNA synthetase. Nature 352: 213-218.
23. Lys2. Nucleic Acids Res 3:523-535.
24. Sierzputowska-Gracz H, Sochacka E, Malkiewicz A, Kuo K, Gehrke CW, Agris PF. 1987. Chemistry and structure of modified uridines in the anticodon, wobble position of transfer RNA are determined by thiolation. J Am Chem Soc 109:7171-7177.
25. Smith WS, Sierzputowska-Gracz H, Sochacka E, Malkiewicz A, Agris PF. 1992. Chemistry and structure of modified uridine dinucleosides are determined by thiolation. J Am Chem Soc 114:7989-7997.
26. Sprinzl M, Horn C, Brown M, Ioudovitch A, Steinberg S. 1998. Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res 26:148-153.
27. Glu is a positive determinant for aminoacylation by Escherichia coli glutamyl-tRNA synthetase. Biochemistry 32:3836-3841.
28. von Ahsen U, Green R, Schroeder R, Noller HF. 1997. Identification of 2′-hydroxyl groups required for interaction of a tRNA anticodon stem-loop region with the ribosome. RNA 3:49-56.
29. Vormbrock R, Morawietz R, Gassen HG. 1974. Codon-anticodon interaction studies with trinucleoside diphosphates containing 2-thiouridine, 4-thiouridine, 2,4-dithiouridine, or 2-thiocytidine. Biochim Biophys Acta 340:348-358.